Wall clock time and date at job start Sat Apr 11 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00081 * 2 1 4 4 H 1.48507 * 109.46679 * 270.00093 * 3 2 1 5 5 H 1.48499 * 109.47212 * 29.99695 * 3 2 1 6 6 H 1.48495 * 109.47279 * 150.00255 * 3 2 1 7 7 C 1.38814 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00271 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99868 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99829 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.49634 * 324.93501 * 10 9 7 12 12 C 1.53037 * 109.52192 * 204.85443 * 10 9 7 13 13 C 1.53044 * 109.53800 * 178.66776 * 12 10 9 14 14 C 1.52762 * 109.38085 * 61.23853 * 13 12 10 15 15 N 1.46918 * 109.01285 * 305.58837 * 14 13 12 16 16 C 1.34777 * 120.63644 * 233.58534 * 15 14 13 17 17 O 1.21518 * 120.00170 * 179.89341 * 16 15 14 18 18 C 1.48160 * 119.99488 * 359.89327 * 16 15 14 19 19 C 1.39221 * 119.68596 * 158.30508 * 18 16 15 20 20 C 1.38718 * 119.18988 * 179.69865 * 19 18 16 21 21 C 1.38402 * 118.55570 * 0.28545 * 20 19 18 22 22 C 1.39261 * 119.30040 * 359.97438 * 21 20 19 23 23 N 1.39823 * 119.61364 * 180.02562 * 22 21 20 24 24 C 1.37185 * 126.48541 * 184.71686 * 23 22 21 25 25 C 1.34612 * 106.83002 * 179.90299 * 24 23 22 26 26 N 1.34158 * 108.21605 * 0.36175 * 25 24 23 27 27 C 1.30480 * 109.37201 * 359.77036 * 26 25 24 28 28 N 1.31966 * 120.76157 * 0.02562 * 22 21 20 29 29 C 1.46937 * 118.73639 * 53.30841 * 15 14 13 30 30 H 0.96998 * 119.99682 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00240 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.46549 * 298.68953 * 12 10 9 33 33 H 1.09001 * 109.46371 * 58.65003 * 12 10 9 34 34 H 1.09003 * 109.50063 * 181.31732 * 13 12 10 35 35 H 1.08997 * 109.49679 * 301.38209 * 13 12 10 36 36 H 1.09000 * 109.50864 * 185.70485 * 14 13 12 37 37 H 1.08999 * 109.43229 * 65.42764 * 14 13 12 38 38 H 1.08006 * 120.40459 * 359.97438 * 19 18 16 39 39 H 1.08006 * 120.71886 * 180.30170 * 20 19 18 40 40 H 1.08000 * 120.34796 * 179.97438 * 21 20 19 41 41 H 1.07999 * 126.58007 * 359.97438 * 24 23 22 42 42 H 1.07999 * 125.89352 * 180.10004 * 25 24 23 43 43 H 1.08005 * 125.71700 * 179.97438 * 27 26 25 44 44 H 1.09000 * 109.58184 * 66.43169 * 29 15 14 45 45 H 1.09001 * 109.58541 * 186.85504 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0011 11 1 3.5659 -3.2058 0.5925 12 6 5.5015 -2.2587 0.6066 13 6 6.2548 -3.5906 0.6385 14 6 6.4228 -4.1121 -0.7875 15 7 5.1038 -4.1798 -1.4309 16 6 4.6751 -5.3239 -1.9999 17 8 3.5811 -5.3675 -2.5272 18 6 5.5376 -6.5284 -1.9823 19 6 4.9662 -7.7880 -2.1410 20 6 5.7842 -8.9083 -2.1292 21 6 7.1455 -8.7317 -1.9531 22 6 7.6508 -7.4437 -1.7946 23 7 9.0251 -7.2576 -1.6168 24 6 9.6608 -6.0697 -1.3588 25 6 10.9748 -6.3445 -1.2587 26 7 11.1444 -7.6604 -1.4572 27 6 9.9848 -8.2185 -1.6727 28 7 6.8474 -6.3968 -1.8103 29 6 4.2582 -2.9781 -1.4369 30 1 -0.4849 0.8401 -0.0004 31 1 3.8647 -0.3621 -0.0004 32 1 6.0562 -1.5422 0.0008 33 1 5.4006 -1.8743 1.6216 34 1 7.2353 -3.4433 1.0912 35 1 5.6887 -4.3147 1.2243 36 1 6.8680 -5.1067 -0.7611 37 1 7.0683 -3.4354 -1.3474 38 1 3.8996 -7.8913 -2.2761 39 1 5.3677 -9.8969 -2.2550 40 1 7.8090 -9.5837 -1.9388 41 1 9.1961 -5.1004 -1.2546 42 1 11.7579 -5.6284 -1.0579 43 1 9.8160 -9.2681 -1.8638 44 1 4.7236 -2.2071 -2.0509 45 1 3.2756 -3.2248 -1.8391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999554414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:28 Heat of formation + Delta-G solvation = 92.113762 kcal Electronic energy + Delta-G solvation = -29425.381319 eV Core-core repulsion = 25444.756078 eV Total energy + Delta-G solvation = -3980.625241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.38903 -41.96448 -40.46261 -38.84196 -36.43708 -35.30502 -34.41813 -33.62443 -33.00605 -31.36939 -30.58688 -30.24431 -27.24254 -25.76409 -25.17157 -25.13465 -23.18728 -22.73925 -22.08710 -21.71244 -20.80613 -19.64271 -19.26775 -18.65477 -17.44265 -17.24420 -17.01958 -16.95649 -16.60592 -16.36358 -15.74383 -15.66508 -15.42992 -15.08477 -14.90739 -14.85743 -14.71179 -14.60470 -14.31799 -14.22210 -14.03258 -13.87679 -13.28801 -13.25106 -12.98418 -12.64035 -12.19192 -12.09807 -11.97775 -11.87848 -11.85352 -11.62553 -11.44523 -11.18045 -11.15695 -11.10176 -10.27112 -10.00660 -9.84509 -9.50152 -9.30791 -8.06406 -5.42950 -0.64126 -0.26639 1.09129 1.30225 1.35535 1.40435 1.47632 1.59799 1.78943 2.11833 2.45394 2.56261 2.82278 3.24124 3.41721 3.45228 3.52883 3.70285 3.81468 3.89131 3.90781 4.01436 4.08046 4.21697 4.25809 4.29308 4.34877 4.48515 4.59904 4.63726 4.66807 4.78646 4.82603 4.92695 4.96148 5.01816 5.07240 5.11104 5.25493 5.29495 5.36673 5.48793 5.67896 5.72162 6.04470 6.16887 6.24760 6.43146 6.91513 6.96759 7.02180 7.74266 7.96536 9.15164 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.002786 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.092278 B =10046.419461 C =11316.498931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.961 3.039 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.245 1.245 7 C -0.238 4.238 8 H 0.047 0.953 9 N -0.743 5.743 10 C 0.172 3.828 11 H 0.032 0.968 12 C -0.121 4.121 13 C -0.123 4.123 14 C 0.075 3.925 15 N -0.583 5.583 16 C 0.554 3.446 17 O -0.575 6.575 18 C 0.099 3.901 19 C -0.126 4.126 20 C -0.030 4.030 21 C -0.140 4.140 22 C 0.326 3.674 23 N -0.415 5.415 24 C -0.041 4.041 25 C -0.038 4.038 26 N -0.514 5.514 27 C 0.202 3.798 28 N -0.478 5.478 29 C 0.102 3.898 30 H 0.259 0.741 31 H 0.371 0.629 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.054 0.946 36 H 0.146 0.854 37 H 0.078 0.922 38 H 0.152 0.848 39 H 0.200 0.800 40 H 0.193 0.807 41 H 0.188 0.812 42 H 0.190 0.810 43 H 0.252 0.748 44 H 0.070 0.930 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.756 -21.576 -2.531 32.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.788 3.212 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.169 1.169 7 C -0.369 4.369 8 H 0.065 0.935 9 N -0.386 5.386 10 C 0.063 3.937 11 H 0.050 0.950 12 C -0.159 4.159 13 C -0.161 4.161 14 C -0.046 4.046 15 N -0.313 5.313 16 C 0.341 3.659 17 O -0.454 6.454 18 C -0.038 4.038 19 C -0.147 4.147 20 C -0.056 4.056 21 C -0.161 4.161 22 C 0.096 3.904 23 N -0.098 5.098 24 C -0.170 4.170 25 C -0.182 4.182 26 N -0.231 5.231 27 C -0.079 4.079 28 N -0.193 5.193 29 C -0.023 4.023 30 H 0.068 0.932 31 H 0.205 0.795 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.073 0.927 36 H 0.162 0.838 37 H 0.097 0.903 38 H 0.169 0.831 39 H 0.217 0.783 40 H 0.210 0.790 41 H 0.205 0.795 42 H 0.207 0.793 43 H 0.268 0.732 44 H 0.089 0.911 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 25.001 -21.175 -2.663 32.871 hybrid contribution -1.724 1.410 -0.217 2.238 sum 23.277 -19.765 -2.880 30.672 Atomic orbital electron populations 1.69908 1.07374 1.26896 1.59142 1.25599 0.96187 1.01604 1.02075 0.85325 0.78824 0.78914 0.78175 1.20424 1.22123 1.16868 1.18955 0.82594 0.93233 1.42133 0.93524 1.42645 1.02415 1.03608 1.89933 1.20583 0.93050 0.87183 0.92903 0.95026 1.21807 0.93794 0.98850 1.01486 1.21836 1.01879 0.95713 0.96684 1.22999 0.82189 1.06969 0.92457 1.48167 1.19105 1.09827 1.54209 1.18473 0.85350 0.83247 0.78797 1.90804 1.22864 1.84312 1.47457 1.20534 0.88447 0.93762 1.01103 1.22364 1.03430 0.91469 0.97461 1.22020 0.91506 1.00469 0.91592 1.22282 0.97718 0.95942 1.00168 1.18576 0.82987 0.90993 0.97892 1.43228 1.03967 1.09899 1.52705 1.23190 0.93852 0.91496 1.08437 1.22726 0.95478 0.93145 1.06865 1.70352 1.24986 1.08682 1.19084 1.26161 0.81021 0.97569 1.03135 1.66691 1.04431 1.32813 1.15405 1.22323 0.94323 0.85705 0.99993 0.93201 0.79538 0.90513 0.91237 0.87235 0.92732 0.83800 0.90336 0.83050 0.78310 0.78964 0.79452 0.79343 0.73210 0.91148 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.63 13.97 21.65 0.30 -64.33 16 2 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 3 Si 0.96 45.68 27.74 68.60 1.90 47.58 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.24 -10.22 6.52 99.48 0.65 -9.57 16 7 C -0.24 -14.06 10.41 84.03 0.88 -13.18 16 8 H 0.05 3.10 8.06 -2.92 -0.02 3.08 16 9 N -0.74 -35.18 4.93 -322.58 -1.59 -36.77 16 10 C 0.17 6.76 2.92 45.07 0.13 6.89 16 11 H 0.03 1.40 8.08 -2.39 -0.02 1.38 16 12 C -0.12 -3.41 5.36 30.62 0.16 -3.25 16 13 C -0.12 -2.66 6.07 30.53 0.19 -2.48 16 14 C 0.07 1.70 5.96 86.22 0.51 2.21 16 15 N -0.58 -18.40 2.98 -822.78 -2.45 -20.85 16 16 C 0.55 18.29 7.62 86.88 0.66 18.95 16 17 O -0.57 -23.81 15.94 -3.77 -0.06 -23.87 16 18 C 0.10 2.29 6.46 41.88 0.27 2.56 16 19 C -0.13 -2.10 9.62 22.62 0.22 -1.88 16 20 C -0.03 -0.21 10.16 22.42 0.23 0.02 16 21 C -0.14 -0.89 9.51 22.56 0.21 -0.67 16 22 C 0.33 4.52 7.50 132.94 1.00 5.51 16 23 N -0.42 -5.70 2.98 -355.81 -1.06 -6.76 16 24 C -0.04 -0.61 11.17 83.02 0.93 0.31 16 25 C -0.04 -0.61 11.85 83.51 0.99 0.38 16 26 N -0.51 -8.88 11.24 -199.68 -2.24 -11.13 16 27 C 0.20 2.29 11.89 179.99 2.14 4.43 16 28 N -0.48 -9.27 5.89 -181.92 -1.07 -10.34 16 29 C 0.10 3.93 6.02 86.36 0.52 4.45 16 30 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 31 H 0.37 16.34 5.66 -92.71 -0.52 15.82 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.15 2.98 3.90 -56.74 -0.22 2.75 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.15 2.67 7.79 -2.91 -0.02 2.65 16 39 H 0.20 -0.33 8.06 -2.91 -0.02 -0.35 16 40 H 0.19 -0.50 6.77 -2.91 -0.02 -0.52 16 41 H 0.19 2.45 7.98 -2.91 -0.02 2.43 16 42 H 0.19 2.17 8.06 -2.91 -0.02 2.14 16 43 H 0.25 0.26 7.06 -2.91 -0.02 0.24 16 44 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.05 2.44 7.00 -2.39 -0.02 2.42 16 Total: -1.00 -85.89 369.98 3.47 -82.42 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.24 Total: 23.11 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 9.50 Total: 20.92 kcal Atomic # 7 Polarization: -142.06 SS G_CDS: -8.12 Total: -150.17 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.06 Total: -23.87 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.90 Total: 47.58 kcal Total: -85.89 3.47 -82.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999554414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.537 kcal (2) G-P(sol) polarization free energy of solvation -85.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds