Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00022 * 2 1 4 4 H 1.48497 * 109.47356 * 240.27234 * 3 2 1 5 5 H 1.48501 * 109.47136 * 0.27668 * 3 2 1 6 6 H 1.48508 * 109.47108 * 120.27496 * 3 2 1 7 7 C 1.38818 * 119.99924 * 180.27411 * 2 1 3 8 8 H 1.07995 * 119.99972 * 179.72992 * 7 2 1 9 9 N 1.36942 * 119.99862 * 359.72592 * 7 2 1 10 10 C 1.46500 * 119.99752 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.50083 * 34.93191 * 10 9 7 12 12 C 1.53035 * 109.49729 * 154.99947 * 10 9 7 13 13 C 1.53041 * 109.53956 * 181.31467 * 12 10 9 14 14 C 1.53194 * 109.31021 * 298.63581 * 13 12 10 15 15 N 1.46922 * 108.77723 * 54.63648 * 14 13 12 16 16 C 1.34777 * 120.63678 * 126.41191 * 15 14 13 17 17 O 1.21566 * 120.00223 * 174.75921 * 16 15 14 18 18 C 1.47697 * 119.99427 * 354.75657 * 16 15 14 19 19 C 1.41560 * 126.43596 * 173.61380 * 18 16 15 20 20 C 1.35326 * 105.56003 * 179.97438 * 19 18 16 21 21 N 1.35914 * 107.11370 * 0.02562 * 20 19 18 22 22 C 1.39903 * 124.96353 * 179.97438 * 21 20 19 23 23 C 1.39329 * 120.85950 * 359.71856 * 22 21 20 24 24 C 1.38017 * 119.08180 * 179.77972 * 23 22 21 25 25 N 1.31937 * 120.83311 * 0.50382 * 24 23 22 26 26 C 1.31929 * 121.88573 * 359.74562 * 25 24 23 27 27 C 1.38023 * 120.83458 * 359.97438 * 26 25 24 28 28 N 1.28481 * 110.06768 * 359.72178 * 21 20 19 29 29 C 1.46931 * 118.73659 * 306.38965 * 15 14 13 30 30 H 0.96993 * 120.00421 * 359.72462 * 1 2 3 31 31 H 0.96995 * 120.00244 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.46039 * 301.33406 * 12 10 9 33 33 H 1.09005 * 109.46243 * 61.30921 * 12 10 9 34 34 H 1.08997 * 109.49630 * 58.58518 * 13 12 10 35 35 H 1.08998 * 109.50143 * 178.68354 * 13 12 10 36 36 H 1.09003 * 109.58376 * 174.41985 * 14 13 12 37 37 H 1.08997 * 109.58626 * 294.84525 * 14 13 12 38 38 H 1.08000 * 127.22397 * 0.04536 * 19 18 16 39 39 H 1.08001 * 126.44795 * 180.02562 * 20 19 18 40 40 H 1.08004 * 120.45946 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.58489 * 180.27227 * 24 23 22 42 42 H 1.07997 * 119.58626 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.46199 * 180.02562 * 27 26 25 44 44 H 1.09004 * 109.58617 * 293.82428 * 29 15 14 45 45 H 1.08996 * 109.58768 * 173.40098 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.0989 1.6993 -1.2158 5 1 1.2852 2.7464 0.0068 6 1 3.1090 1.6934 1.2092 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0102 9 7 1.3255 -2.3881 -0.0058 10 6 2.0580 -3.6568 -0.0113 11 1 2.9716 -3.5520 0.5739 12 6 1.1834 -4.7542 0.5993 13 6 1.9597 -6.0729 0.6241 14 6 2.3143 -6.4790 -0.8099 15 7 3.0309 -5.3689 -1.4523 16 6 4.2314 -5.5699 -2.0310 17 8 4.7706 -4.6674 -2.6415 18 6 4.8919 -6.8865 -1.9233 19 6 6.0822 -7.2860 -2.5771 20 6 6.3032 -8.5612 -2.1817 21 7 5.2934 -8.8986 -1.3367 22 6 5.1557 -10.1406 -0.7076 23 6 6.0840 -11.1572 -0.9220 24 6 5.9150 -12.3666 -0.2789 25 7 4.8858 -12.5688 0.5216 26 6 3.9831 -11.6332 0.7460 27 6 4.0836 -10.3946 0.1454 28 7 4.4868 -7.9084 -1.1961 29 6 2.4137 -4.0356 -1.4524 30 1 -0.4850 0.8399 0.0040 31 1 0.3555 -2.3881 -0.0014 32 1 0.9086 -4.4756 1.6166 33 1 0.2813 -4.8754 -0.0004 34 1 2.8745 -5.9457 1.2029 35 1 1.3448 -6.8486 1.0804 36 1 2.9511 -7.3635 -0.7922 37 1 1.4013 -6.6945 -1.3649 38 1 6.6877 -6.6965 -3.2495 39 1 7.1269 -9.1923 -2.4811 40 1 6.9265 -10.9996 -1.5792 41 1 6.6321 -13.1587 -0.4357 42 1 3.1550 -11.8390 1.4080 43 1 3.3415 -9.6329 0.3337 44 1 1.5088 -4.0518 -2.0598 45 1 3.1160 -3.3078 -1.8588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999665343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = 121.271694 kcal Electronic energy + Delta-G solvation = -29042.712254 eV Core-core repulsion = 25063.351396 eV Total energy + Delta-G solvation = -3979.360858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.35609 -40.57209 -39.62221 -37.24606 -34.91569 -34.40407 -32.39402 -32.15459 -31.22944 -31.03576 -30.62503 -28.20610 -26.09354 -24.55321 -24.33136 -23.89136 -22.30688 -21.90332 -21.56739 -20.20228 -19.36533 -18.66564 -17.11939 -17.06136 -16.62787 -16.57181 -16.43821 -15.82027 -15.34753 -15.02206 -14.60515 -14.41048 -14.25970 -14.23139 -14.07171 -13.86713 -13.52377 -13.42696 -13.23611 -12.79197 -12.39575 -12.33181 -12.22407 -11.63372 -11.22478 -11.15057 -10.87551 -10.79363 -10.55396 -10.24369 -10.22766 -10.16264 -9.91007 -9.86588 -9.80308 -9.68902 -9.54936 -9.10586 -9.03740 -8.30062 -6.98076 -5.76649 -3.06355 0.08380 0.46222 1.55088 1.78119 1.88239 3.17716 3.20331 3.41379 3.47624 3.51137 3.53185 3.74546 3.84424 4.07685 4.28489 4.37051 4.48579 4.60572 4.69278 4.86477 5.04826 5.12932 5.15948 5.22049 5.23235 5.34983 5.37844 5.44879 5.51638 5.65508 5.76038 5.84526 5.92842 5.96827 6.09964 6.14889 6.21957 6.26508 6.39044 6.48125 6.53093 6.81063 6.85466 7.05127 7.33725 7.43024 7.69033 7.73203 8.32584 8.41830 9.53237 10.07347 10.42907 11.45546 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.002433 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.696502 B =11507.618436 C =12461.240970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.125 4.125 14 C 0.075 3.925 15 N -0.588 5.588 16 C 0.591 3.409 17 O -0.530 6.530 18 C 0.023 3.977 19 C -0.165 4.165 20 C -0.012 4.012 21 N -0.250 5.250 22 C 0.189 3.811 23 C -0.187 4.187 24 C 0.126 3.874 25 N -0.489 5.489 26 C 0.126 3.874 27 C -0.167 4.167 28 N -0.258 5.258 29 C 0.093 3.907 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.061 0.939 38 H 0.172 0.828 39 H 0.187 0.813 40 H 0.146 0.854 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.154 0.846 44 H 0.064 0.936 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.919 -28.450 -1.604 30.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.163 4.163 14 C -0.049 4.049 15 N -0.321 5.321 16 C 0.376 3.624 17 O -0.405 6.405 18 C -0.140 4.140 19 C -0.192 4.192 20 C -0.150 4.150 21 N -0.031 5.031 22 C 0.090 3.910 23 C -0.210 4.210 24 C -0.031 4.031 25 N -0.198 5.198 26 C -0.031 4.031 27 C -0.189 4.189 28 N -0.089 5.089 29 C -0.032 4.032 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.145 0.855 37 H 0.079 0.921 38 H 0.190 0.810 39 H 0.204 0.796 40 H 0.164 0.836 41 H 0.185 0.815 42 H 0.186 0.814 43 H 0.172 0.828 44 H 0.082 0.918 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.376 -28.961 -0.762 30.774 hybrid contribution 0.800 2.072 -1.030 2.449 sum 11.176 -26.889 -1.792 29.174 Atomic orbital electron populations 1.69648 1.05112 1.25870 1.57411 1.24748 0.95522 0.97747 1.02672 0.86259 0.78547 0.83372 0.77992 1.21086 1.21690 1.21229 1.19234 0.91080 0.83988 1.43093 0.91088 1.42374 1.05811 0.99561 1.88050 1.20481 0.94991 0.86471 0.92261 0.93135 1.21845 0.98710 0.94302 1.01684 1.21819 1.00573 0.97848 0.96105 1.22643 0.97964 0.91107 0.93200 1.48124 1.18134 1.11461 1.54332 1.16984 0.81058 0.84606 0.79744 1.90814 1.64797 1.42571 1.42275 1.22445 0.97541 0.94320 0.99680 1.21924 0.98163 0.94723 1.04350 1.23068 0.96039 0.98032 0.97870 1.42957 1.18257 1.09068 1.32817 1.17930 0.96453 0.82401 0.94239 1.21920 1.00700 0.93888 1.04452 1.22718 0.94672 0.94961 0.90786 1.67733 1.02866 1.33799 1.15445 1.22829 0.96713 0.87681 0.95858 1.22075 0.98558 1.00278 0.97996 1.73312 1.17215 0.95692 1.22637 1.22879 0.97931 0.81113 1.01247 0.93422 0.78045 0.91495 0.92090 0.91824 0.91232 0.85543 0.92060 0.81035 0.79556 0.83650 0.81521 0.81383 0.82844 0.91799 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.85 9.93 -15.05 -0.15 -7.00 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.72 -18.09 5.12 -53.31 -0.27 -18.36 16 10 C 0.17 3.45 2.92 -67.81 -0.20 3.26 16 11 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 12 C -0.13 -2.08 5.35 -26.69 -0.14 -2.22 16 13 C -0.12 -1.63 6.08 -26.61 -0.16 -1.79 16 14 C 0.07 1.00 6.33 -3.71 -0.02 0.97 16 15 N -0.59 -9.85 2.97 -173.94 -0.52 -10.36 16 16 C 0.59 10.25 7.70 -12.40 -0.10 10.15 16 17 O -0.53 -10.89 16.36 5.31 0.09 -10.80 16 18 C 0.02 0.32 6.87 -82.75 -0.57 -0.25 16 19 C -0.16 -1.80 10.81 -39.35 -0.43 -2.23 16 20 C -0.01 -0.09 10.82 -16.78 -0.18 -0.28 16 21 N -0.25 -2.42 3.51 -10.37 -0.04 -2.46 16 22 C 0.19 1.50 6.70 -83.36 -0.56 0.94 16 23 C -0.19 -1.01 9.50 -39.26 -0.37 -1.38 16 24 C 0.13 0.68 11.17 -17.59 -0.20 0.48 16 25 N -0.49 -3.59 10.36 -13.32 -0.14 -3.73 16 26 C 0.13 0.81 11.17 -17.59 -0.20 0.61 16 27 C -0.17 -1.23 9.67 -39.25 -0.38 -1.61 16 28 N -0.26 -3.09 7.63 33.43 0.26 -2.84 16 29 C 0.09 1.82 6.00 -3.71 -0.02 1.80 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.39 10.19 7.80 -40.82 -0.32 9.87 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.13 1.56 3.73 -112.08 -0.42 1.14 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.19 0.70 7.04 -52.49 -0.37 0.33 16 40 H 0.15 0.39 6.78 -52.48 -0.36 0.03 16 41 H 0.17 0.39 8.06 -52.49 -0.42 -0.03 16 42 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.15 1.09 7.74 -52.49 -0.41 0.68 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.09 2.06 7.04 -51.93 -0.37 1.70 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -34.99 373.80 -9.06 -44.05 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.00 Total: 7.50 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -3.77 Total: 1.05 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: 0.02 Total: -65.25 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.99 -9.06 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999665343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.322 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds