Wall clock time and date at job start Sat Apr 11 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00506 * 2 1 4 4 H 1.48502 * 109.47183 * 270.27745 * 3 2 1 5 5 H 1.48500 * 109.46848 * 30.27551 * 3 2 1 6 6 H 1.48496 * 109.47333 * 150.27543 * 3 2 1 7 7 C 1.38816 * 119.99746 * 180.27580 * 2 1 3 8 8 H 1.07997 * 120.00124 * 359.72191 * 7 2 1 9 9 N 1.36942 * 120.00205 * 179.72335 * 7 2 1 10 10 C 1.46501 * 120.00224 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49316 * 34.93535 * 10 9 7 12 12 C 1.53039 * 109.49705 * 155.00053 * 10 9 7 13 13 C 1.53037 * 109.53540 * 181.31654 * 12 10 9 14 14 C 1.53192 * 109.31574 * 298.63684 * 13 12 10 15 15 N 1.46927 * 108.77517 * 54.63121 * 14 13 12 16 16 C 1.34775 * 120.62727 * 126.41827 * 15 14 13 17 17 O 1.21519 * 119.99941 * 354.18262 * 16 15 14 18 18 C 1.48155 * 119.99966 * 174.18215 * 16 15 14 19 19 C 1.39945 * 120.89167 * 320.04636 * 18 16 15 20 20 C 1.38057 * 119.13501 * 179.72924 * 19 18 16 21 21 N 1.31847 * 120.98027 * 0.55527 * 20 19 18 22 22 C 1.32232 * 121.97196 * 359.71996 * 21 20 19 23 23 N 1.39833 * 119.62397 * 179.97438 * 22 21 20 24 24 C 1.35845 * 126.10373 * 359.73381 * 23 22 21 25 25 C 1.35275 * 107.61662 * 179.84205 * 24 23 22 26 26 C 1.39955 * 107.96682 * 0.42459 * 25 24 23 27 27 N 1.30812 * 108.36915 * 359.73445 * 26 25 24 28 28 C 1.38904 * 120.75307 * 359.97438 * 22 21 20 29 29 C 1.46922 * 118.73983 * 306.39545 * 15 14 13 30 30 H 0.97003 * 120.00113 * 359.72010 * 1 2 3 31 31 H 0.97001 * 119.99642 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.45809 * 301.33505 * 12 10 9 33 33 H 1.08997 * 109.46102 * 61.31165 * 12 10 9 34 34 H 1.09003 * 109.49883 * 58.58520 * 13 12 10 35 35 H 1.09000 * 109.49864 * 178.68275 * 13 12 10 36 36 H 1.08994 * 109.58769 * 174.42839 * 14 13 12 37 37 H 1.09004 * 109.58082 * 294.85117 * 14 13 12 38 38 H 1.07996 * 120.43071 * 359.97438 * 19 18 16 39 39 H 1.07999 * 119.51156 * 180.25609 * 20 19 18 40 40 H 1.08002 * 126.18972 * 359.97438 * 24 23 22 41 41 H 1.08001 * 126.02004 * 180.12576 * 25 24 23 42 42 H 1.07999 * 125.81601 * 179.74079 * 26 25 24 43 43 H 1.08004 * 120.53286 * 179.97438 * 28 22 21 44 44 H 1.08999 * 109.58670 * 293.81890 * 29 15 14 45 45 H 1.09006 * 109.58536 * 173.39789 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4919 2.0497 -1.4001 5 1 1.4507 2.6509 0.7059 6 1 3.5507 1.4384 0.6942 7 6 2.0101 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0057 9 7 3.3795 -1.2023 -0.0115 10 6 4.1120 -2.4710 -0.0182 11 1 3.5619 -3.2055 -0.6064 12 6 5.4971 -2.2579 -0.6331 13 6 6.2507 -3.5894 -0.6705 14 6 6.4311 -4.1099 0.7589 15 7 5.1141 -4.1800 1.4064 16 6 4.6902 -5.3243 1.9786 17 8 5.3510 -6.3384 1.8711 18 6 3.4187 -5.3457 2.7387 19 6 3.0627 -4.2805 3.5736 20 6 1.8665 -4.3358 4.2608 21 7 1.0670 -5.3782 4.1486 22 6 1.3650 -6.4093 3.3763 23 7 0.4811 -7.4897 3.2943 24 6 -0.7016 -7.6081 3.9521 25 6 -1.2497 -8.7932 3.5987 26 6 -0.3753 -9.4245 2.7067 27 7 0.6600 -8.6461 2.5239 28 6 2.5461 -6.4315 2.6456 29 6 4.2681 -2.9788 1.4187 30 1 -0.4850 0.8401 0.0041 31 1 3.8645 -0.3622 -0.0112 32 1 5.3890 -1.8732 -1.6471 33 1 6.0556 -1.5417 -0.0305 34 1 5.6807 -4.3138 -1.2522 35 1 7.2281 -3.4415 -1.1299 36 1 6.8786 -5.1034 0.7323 37 1 7.0766 -3.4310 1.3162 38 1 3.7132 -3.4245 3.6758 39 1 1.5838 -3.5152 4.9035 40 1 -1.1281 -6.8857 4.6322 41 1 -2.1935 -9.1857 3.9476 42 1 -0.5291 -10.3898 2.2474 43 1 2.7862 -7.2757 2.0162 44 1 4.7372 -2.2077 2.0298 45 1 3.2883 -3.2261 1.8274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000148362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:16 Heat of formation + Delta-G solvation = 118.296885 kcal Electronic energy + Delta-G solvation = -29474.334236 eV Core-core repulsion = 25494.844381 eV Total energy + Delta-G solvation = -3979.489855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68489 -40.70803 -39.37628 -37.53390 -34.57012 -34.06788 -33.01329 -32.22656 -31.46333 -30.46201 -29.52751 -28.82332 -26.11694 -24.38919 -24.22328 -23.69894 -22.05556 -21.43006 -20.91016 -20.49425 -19.47791 -18.18198 -17.68485 -17.21877 -16.32287 -16.03122 -15.89178 -15.60520 -15.19880 -14.96637 -14.68315 -14.37598 -14.21941 -14.10310 -13.73314 -13.62721 -13.59826 -13.17394 -12.90704 -12.83774 -12.64743 -12.57483 -12.23615 -11.75744 -11.33676 -11.03539 -10.97821 -10.86703 -10.69058 -10.54627 -10.41306 -10.37332 -10.11461 -9.99484 -9.71399 -9.60436 -9.30417 -9.22427 -8.58129 -8.38331 -7.43313 -5.89554 -3.28052 0.45702 0.76866 1.89868 1.97982 2.63450 2.68003 2.94857 3.26603 3.30260 3.36711 3.66714 4.06741 4.28335 4.43322 4.46632 4.72249 4.78826 4.85037 4.89543 5.01617 5.03033 5.05396 5.24292 5.31390 5.36321 5.46874 5.48228 5.56360 5.58424 5.62808 5.70998 5.78068 5.81936 5.87425 5.90104 6.00144 6.08019 6.15436 6.20998 6.38550 6.47302 6.54041 6.69536 6.92700 7.23773 7.35707 7.74079 7.84181 8.05543 8.28568 9.05426 9.77349 9.95801 11.27989 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009672 B = 0.003741 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.161854 B = 7482.746697 C = 9438.482080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.012 3.988 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.254 4.254 8 H 0.089 0.911 9 N -0.741 5.741 10 C 0.172 3.828 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.129 4.129 14 C 0.112 3.888 15 N -0.596 5.596 16 C 0.562 3.438 17 O -0.537 6.537 18 C -0.056 4.056 19 C -0.148 4.148 20 C 0.139 3.861 21 N -0.493 5.493 22 C 0.366 3.634 23 N -0.324 5.324 24 C 0.082 3.918 25 C -0.269 4.269 26 C 0.062 3.938 27 N -0.283 5.283 28 C -0.114 4.114 29 C 0.073 3.927 30 H 0.261 0.739 31 H 0.364 0.636 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.153 0.847 39 H 0.176 0.824 40 H 0.184 0.816 41 H 0.156 0.844 42 H 0.193 0.807 43 H 0.155 0.845 44 H 0.069 0.931 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.394 -11.789 7.818 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.185 4.185 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.383 4.383 8 H 0.107 0.893 9 N -0.383 5.383 10 C 0.061 3.939 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.168 4.168 14 C -0.010 4.010 15 N -0.328 5.328 16 C 0.349 3.651 17 O -0.414 6.414 18 C -0.067 4.067 19 C -0.169 4.169 20 C -0.019 4.019 21 N -0.206 5.206 22 C 0.139 3.861 23 N -0.102 5.102 24 C -0.059 4.059 25 C -0.297 4.297 26 C -0.127 4.127 27 N -0.102 5.102 28 C -0.137 4.137 29 C -0.051 4.051 30 H 0.071 0.929 31 H 0.197 0.803 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.170 0.830 39 H 0.193 0.807 40 H 0.201 0.799 41 H 0.174 0.826 42 H 0.209 0.791 43 H 0.172 0.828 44 H 0.087 0.913 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.866 -12.151 7.606 15.895 hybrid contribution 0.250 1.356 -0.016 1.379 sum 7.116 -10.794 7.591 14.993 Atomic orbital electron populations 1.69701 1.05158 1.26026 1.56533 1.24673 0.95176 0.97210 1.01453 0.86580 0.79183 0.84973 0.77905 1.21001 1.21642 1.20246 1.19036 0.80317 0.94742 1.44246 0.89285 1.42729 1.04113 1.01656 1.89848 1.20456 0.91363 0.89644 0.92428 0.92153 1.21876 0.96470 0.96626 1.01880 1.21873 1.00941 0.97863 0.96140 1.21653 0.83536 1.02701 0.93109 1.48124 1.18467 1.11442 1.54788 1.18116 0.84572 0.83303 0.79078 1.90768 1.57099 1.32589 1.60970 1.20136 0.95041 0.94254 0.97316 1.22482 0.98900 0.98484 0.97048 1.22505 0.89096 0.93891 0.96364 1.66703 1.34492 1.00706 1.18704 1.17464 0.87865 0.86204 0.94597 1.45754 1.15521 1.13743 1.35171 1.22949 0.86550 0.98977 0.97457 1.21650 1.04155 0.96929 1.06964 1.24155 0.91493 0.99685 0.97336 1.77508 1.23797 0.93228 1.15649 1.21529 0.92273 0.99547 1.00309 1.23248 0.94874 0.85043 1.01955 0.92876 0.80334 0.91176 0.92024 0.91333 0.90727 0.89064 0.91290 0.82977 0.80666 0.79939 0.82633 0.79055 0.82769 0.91299 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.87 13.97 55.49 0.78 -27.09 16 2 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 3 Si 0.88 20.73 27.74 -169.99 -4.71 16.02 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -5.97 6.52 56.52 0.37 -5.61 16 7 C -0.25 -6.66 10.41 -15.06 -0.16 -6.81 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 9 N -0.74 -15.85 4.93 -53.31 -0.26 -16.11 16 10 C 0.17 2.99 2.92 -67.81 -0.20 2.79 16 11 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 12 C -0.13 -1.80 5.35 -26.69 -0.14 -1.94 16 13 C -0.13 -1.51 6.08 -26.61 -0.16 -1.68 16 14 C 0.11 1.36 6.44 -3.71 -0.02 1.34 16 15 N -0.60 -8.51 2.97 -173.77 -0.52 -9.03 16 16 C 0.56 8.91 7.38 -12.19 -0.09 8.82 16 17 O -0.54 -9.74 16.37 5.35 0.09 -9.65 16 18 C -0.06 -0.84 5.15 -104.67 -0.54 -1.38 16 19 C -0.15 -1.93 7.49 -39.01 -0.29 -2.22 16 20 C 0.14 1.76 11.17 -17.61 -0.20 1.57 16 21 N -0.49 -7.17 9.83 -12.34 -0.12 -7.29 16 22 C 0.37 5.68 7.55 -154.43 -1.17 4.52 16 23 N -0.32 -4.81 3.81 -12.13 -0.05 -4.85 16 24 C 0.08 1.00 11.10 -16.83 -0.19 0.82 16 25 C -0.27 -2.74 10.80 -39.99 -0.43 -3.17 16 26 C 0.06 0.68 12.02 -17.34 -0.21 0.47 16 27 N -0.28 -4.10 11.83 30.64 0.36 -3.74 16 28 C -0.11 -1.79 9.35 -38.82 -0.36 -2.15 16 29 C 0.07 1.12 4.52 -3.71 -0.02 1.11 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.36 7.61 5.66 -40.82 -0.23 7.37 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.15 7.00 -51.93 -0.36 0.78 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.15 1.71 6.64 -52.49 -0.35 1.36 16 39 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.18 1.86 8.05 -52.49 -0.42 1.44 16 41 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.15 2.50 7.69 -52.48 -0.40 2.10 16 44 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 45 H 0.10 1.58 4.73 -51.93 -0.25 1.33 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -33.60 372.64 -8.92 -42.52 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -5.83 Total: 11.33 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -4.27 Total: 2.29 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: 0.19 Total: -68.12 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.71 Total: 16.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.60 -8.92 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000148362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.817 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds