Wall clock time and date at job start Sat Apr 11 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00506 * 2 1 4 4 H 1.48502 * 109.47183 * 270.27745 * 3 2 1 5 5 H 1.48500 * 109.46848 * 30.27551 * 3 2 1 6 6 H 1.48496 * 109.47333 * 150.27543 * 3 2 1 7 7 C 1.38816 * 119.99746 * 180.27580 * 2 1 3 8 8 H 1.07997 * 120.00124 * 359.72191 * 7 2 1 9 9 N 1.36942 * 120.00205 * 179.72335 * 7 2 1 10 10 C 1.46501 * 120.00224 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49316 * 34.93535 * 10 9 7 12 12 C 1.53039 * 109.49705 * 155.00053 * 10 9 7 13 13 C 1.53037 * 109.53540 * 181.31654 * 12 10 9 14 14 C 1.53192 * 109.31574 * 298.63684 * 13 12 10 15 15 N 1.46927 * 108.77517 * 54.63121 * 14 13 12 16 16 C 1.34775 * 120.62727 * 126.41827 * 15 14 13 17 17 O 1.21519 * 119.99941 * 354.18262 * 16 15 14 18 18 C 1.48155 * 119.99966 * 174.18215 * 16 15 14 19 19 C 1.39945 * 120.89167 * 320.04636 * 18 16 15 20 20 C 1.38057 * 119.13501 * 179.72924 * 19 18 16 21 21 N 1.31847 * 120.98027 * 0.55527 * 20 19 18 22 22 C 1.32232 * 121.97196 * 359.71996 * 21 20 19 23 23 N 1.39833 * 119.62397 * 179.97438 * 22 21 20 24 24 C 1.35845 * 126.10373 * 359.73381 * 23 22 21 25 25 C 1.35275 * 107.61662 * 179.84205 * 24 23 22 26 26 C 1.39955 * 107.96682 * 0.42459 * 25 24 23 27 27 N 1.30812 * 108.36915 * 359.73445 * 26 25 24 28 28 C 1.38904 * 120.75307 * 359.97438 * 22 21 20 29 29 C 1.46922 * 118.73983 * 306.39545 * 15 14 13 30 30 H 0.97003 * 120.00113 * 359.72010 * 1 2 3 31 31 H 0.97001 * 119.99642 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.45809 * 301.33505 * 12 10 9 33 33 H 1.08997 * 109.46102 * 61.31165 * 12 10 9 34 34 H 1.09003 * 109.49883 * 58.58520 * 13 12 10 35 35 H 1.09000 * 109.49864 * 178.68275 * 13 12 10 36 36 H 1.08994 * 109.58769 * 174.42839 * 14 13 12 37 37 H 1.09004 * 109.58082 * 294.85117 * 14 13 12 38 38 H 1.07996 * 120.43071 * 359.97438 * 19 18 16 39 39 H 1.07999 * 119.51156 * 180.25609 * 20 19 18 40 40 H 1.08002 * 126.18972 * 359.97438 * 24 23 22 41 41 H 1.08001 * 126.02004 * 180.12576 * 25 24 23 42 42 H 1.07999 * 125.81601 * 179.74079 * 26 25 24 43 43 H 1.08004 * 120.53286 * 179.97438 * 28 22 21 44 44 H 1.08999 * 109.58670 * 293.81890 * 29 15 14 45 45 H 1.09006 * 109.58536 * 173.39789 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4919 2.0497 -1.4001 5 1 1.4507 2.6509 0.7059 6 1 3.5507 1.4384 0.6942 7 6 2.0101 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0057 9 7 3.3795 -1.2023 -0.0115 10 6 4.1120 -2.4710 -0.0182 11 1 3.5619 -3.2055 -0.6064 12 6 5.4971 -2.2579 -0.6331 13 6 6.2507 -3.5894 -0.6705 14 6 6.4311 -4.1099 0.7589 15 7 5.1141 -4.1800 1.4064 16 6 4.6902 -5.3243 1.9786 17 8 5.3510 -6.3384 1.8711 18 6 3.4187 -5.3457 2.7387 19 6 3.0627 -4.2805 3.5736 20 6 1.8665 -4.3358 4.2608 21 7 1.0670 -5.3782 4.1486 22 6 1.3650 -6.4093 3.3763 23 7 0.4811 -7.4897 3.2943 24 6 -0.7016 -7.6081 3.9521 25 6 -1.2497 -8.7932 3.5987 26 6 -0.3753 -9.4245 2.7067 27 7 0.6600 -8.6461 2.5239 28 6 2.5461 -6.4315 2.6456 29 6 4.2681 -2.9788 1.4187 30 1 -0.4850 0.8401 0.0041 31 1 3.8645 -0.3622 -0.0112 32 1 5.3890 -1.8732 -1.6471 33 1 6.0556 -1.5417 -0.0305 34 1 5.6807 -4.3138 -1.2522 35 1 7.2281 -3.4415 -1.1299 36 1 6.8786 -5.1034 0.7323 37 1 7.0766 -3.4310 1.3162 38 1 3.7132 -3.4245 3.6758 39 1 1.5838 -3.5152 4.9035 40 1 -1.1281 -6.8857 4.6322 41 1 -2.1935 -9.1857 3.9476 42 1 -0.5291 -10.3898 2.2474 43 1 2.7862 -7.2757 2.0162 44 1 4.7372 -2.2077 2.0298 45 1 3.2883 -3.2261 1.8274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000148362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:14 Heat of formation + Delta-G solvation = 96.777370 kcal Electronic energy + Delta-G solvation = -29475.267392 eV Core-core repulsion = 25494.844381 eV Total energy + Delta-G solvation = -3980.423012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.68119 -41.83219 -40.50663 -38.86462 -36.20126 -35.15217 -34.13110 -33.74325 -32.93807 -31.44067 -30.59915 -30.28665 -27.28597 -25.82422 -25.28438 -25.10390 -23.21666 -22.69591 -21.89062 -21.72866 -20.61671 -19.59233 -19.25006 -18.36981 -17.49540 -17.15410 -17.01091 -16.77858 -16.59824 -16.24227 -15.93298 -15.64037 -15.48971 -15.27889 -15.00277 -14.72524 -14.69565 -14.49576 -14.25259 -13.98507 -13.89000 -13.73010 -13.42771 -13.20910 -12.97248 -12.54815 -12.14790 -12.02538 -11.90653 -11.87456 -11.72215 -11.66276 -11.61558 -11.34745 -11.15704 -11.10966 -10.75400 -10.27081 -9.93017 -9.39161 -9.26172 -8.00882 -5.37180 -0.62226 -0.35814 0.91511 1.00214 1.41614 1.45086 1.46035 1.53387 1.78841 1.80793 2.50557 2.55887 2.94422 3.23458 3.30627 3.39580 3.56429 3.65941 3.78741 3.86564 3.97870 4.01078 4.03344 4.11404 4.23850 4.34315 4.36560 4.47914 4.57504 4.58151 4.64674 4.69324 4.76859 4.81830 4.88462 4.94159 5.00787 5.07945 5.19412 5.31449 5.40908 5.43486 5.56129 5.75397 5.94366 6.12583 6.21908 6.26842 6.71404 6.82960 7.08180 7.80437 8.02514 9.20239 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009672 B = 0.003741 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.161854 B = 7482.746697 C = 9438.482080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.056 4.056 3 Si 0.955 3.045 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.239 1.239 7 C -0.233 4.233 8 H 0.047 0.953 9 N -0.740 5.740 10 C 0.166 3.834 11 H 0.027 0.973 12 C -0.122 4.122 13 C -0.121 4.121 14 C 0.107 3.893 15 N -0.589 5.589 16 C 0.561 3.439 17 O -0.565 6.565 18 C -0.068 4.068 19 C -0.144 4.144 20 C 0.139 3.861 21 N -0.502 5.502 22 C 0.355 3.645 23 N -0.345 5.345 24 C 0.061 3.939 25 C -0.255 4.255 26 C 0.068 3.932 27 N -0.330 5.330 28 C -0.134 4.134 29 C 0.084 3.916 30 H 0.258 0.742 31 H 0.372 0.628 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.175 0.825 39 H 0.211 0.789 40 H 0.196 0.804 41 H 0.192 0.808 42 H 0.230 0.770 43 H 0.138 0.862 44 H 0.094 0.906 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.345 -10.664 8.696 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.248 4.248 3 Si 0.782 3.218 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.163 1.163 7 C -0.364 4.364 8 H 0.065 0.935 9 N -0.384 5.384 10 C 0.057 3.943 11 H 0.046 0.954 12 C -0.160 4.160 13 C -0.159 4.159 14 C -0.014 4.014 15 N -0.320 5.320 16 C 0.349 3.651 17 O -0.445 6.445 18 C -0.080 4.080 19 C -0.165 4.165 20 C -0.018 4.018 21 N -0.216 5.216 22 C 0.128 3.872 23 N -0.123 5.123 24 C -0.079 4.079 25 C -0.283 4.283 26 C -0.120 4.120 27 N -0.149 5.149 28 C -0.158 4.158 29 C -0.040 4.040 30 H 0.066 0.934 31 H 0.206 0.794 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.192 0.808 39 H 0.227 0.773 40 H 0.213 0.787 41 H 0.209 0.791 42 H 0.246 0.754 43 H 0.156 0.844 44 H 0.112 0.888 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.876 -11.063 8.484 16.527 hybrid contribution -0.437 0.840 -0.327 1.002 sum 8.439 -10.223 8.157 15.565 Atomic orbital electron populations 1.69900 1.07430 1.26759 1.59150 1.25489 0.95939 1.01279 1.02122 0.85422 0.79112 0.79335 0.77926 1.21048 1.22632 1.16302 1.18881 0.82490 0.93005 1.42043 0.93493 1.42606 1.02308 1.03467 1.89982 1.20617 0.92806 0.87308 0.93610 0.95432 1.21810 0.94176 0.98314 1.01748 1.21839 1.02131 0.96099 0.95870 1.21914 0.82561 1.03364 0.93564 1.48135 1.19056 1.10538 1.54318 1.18240 0.84536 0.83258 0.79087 1.90745 1.58009 1.33499 1.62288 1.20216 0.94865 0.94862 0.98018 1.22717 0.99294 0.98301 0.96166 1.23177 0.88588 0.94051 0.96019 1.66813 1.34960 1.00977 1.18818 1.17655 0.88059 0.86852 0.94652 1.45903 1.16299 1.13866 1.36236 1.23441 0.86177 1.00331 0.97973 1.22115 1.04844 0.95751 1.05585 1.24920 0.90315 1.00342 0.96458 1.77487 1.26011 0.94098 1.17260 1.21453 0.93323 0.99720 1.01259 1.22962 0.94807 0.85810 1.00429 0.93360 0.79422 0.91420 0.89678 0.93079 0.87240 0.89520 0.88269 0.80796 0.77267 0.78687 0.79120 0.75365 0.84444 0.88782 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.72 13.97 21.65 0.30 -60.42 16 2 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 3 Si 0.96 42.01 27.74 68.60 1.90 43.92 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.24 -8.96 6.52 99.48 0.65 -8.31 16 7 C -0.23 -12.40 10.41 84.03 0.88 -11.53 16 8 H 0.05 2.85 8.06 -2.91 -0.02 2.82 16 9 N -0.74 -30.60 4.93 -322.57 -1.59 -32.19 16 10 C 0.17 5.59 2.92 45.07 0.13 5.72 16 11 H 0.03 1.10 8.08 -2.39 -0.02 1.08 16 12 C -0.12 -3.01 5.35 30.62 0.16 -2.84 16 13 C -0.12 -2.49 6.08 30.67 0.19 -2.30 16 14 C 0.11 2.31 6.44 86.36 0.56 2.87 16 15 N -0.59 -16.12 2.97 -821.97 -2.44 -18.56 16 16 C 0.56 18.00 7.38 86.88 0.64 18.64 16 17 O -0.57 -21.04 16.37 -3.78 -0.06 -21.10 16 18 C -0.07 -2.12 5.15 -19.90 -0.10 -2.23 16 19 C -0.14 -3.69 7.49 22.64 0.17 -3.52 16 20 C 0.14 3.47 11.17 84.65 0.95 4.41 16 21 N -0.50 -14.91 9.83 -192.95 -1.90 -16.81 16 22 C 0.35 11.63 7.55 132.77 1.00 12.63 16 23 N -0.34 -10.68 3.81 -192.28 -0.73 -11.41 16 24 C 0.06 1.49 11.10 83.39 0.93 2.41 16 25 C -0.26 -4.86 10.80 22.00 0.24 -4.63 16 26 C 0.07 1.43 12.02 85.26 1.02 2.45 16 27 N -0.33 -9.93 11.83 -56.98 -0.67 -10.60 16 28 C -0.13 -4.54 9.35 22.76 0.21 -4.33 16 29 C 0.08 2.45 4.52 86.36 0.39 2.84 16 30 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.37 14.31 5.66 -92.71 -0.52 13.78 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 2.03 7.00 -2.39 -0.02 2.01 16 37 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.17 3.56 6.64 -2.91 -0.02 3.55 16 39 H 0.21 3.58 8.06 -2.91 -0.02 3.56 16 40 H 0.20 3.98 8.05 -2.91 -0.02 3.96 16 41 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.23 2.70 8.06 -2.91 -0.02 2.67 16 43 H 0.14 4.97 7.69 -2.91 -0.02 4.95 16 44 H 0.09 2.32 8.13 -2.39 -0.02 2.31 16 45 H 0.08 2.58 4.73 -2.38 -0.01 2.57 16 Total: -1.00 -77.57 372.64 3.08 -74.50 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: 0.44 Total: 34.75 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 7.83 Total: 17.93 kcal Atomic # 7 Polarization: -142.96 SS G_CDS: -7.03 Total: -149.99 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.06 Total: -21.10 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.90 Total: 43.92 kcal Total: -77.57 3.08 -74.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000148362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.273 kcal (2) G-P(sol) polarization free energy of solvation -77.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds