Wall clock time and date at job start Sat Apr 11 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00313 * 2 1 4 4 H 1.48493 * 109.47267 * 240.00244 * 3 2 1 5 5 H 1.48504 * 109.46812 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47029 * 119.99829 * 3 2 1 7 7 C 1.38810 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00334 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00222 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00487 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.49277 * 324.93579 * 10 9 7 12 12 C 1.53102 * 109.51763 * 204.87340 * 10 9 7 13 13 C 1.53037 * 109.50493 * 178.68128 * 12 10 9 14 14 C 1.53195 * 109.33975 * 61.34720 * 13 12 10 15 15 N 1.46920 * 108.77415 * 305.35119 * 14 13 12 16 16 C 1.34774 * 120.62932 * 233.58179 * 15 14 13 17 17 O 1.21520 * 119.99908 * 172.33089 * 16 15 14 18 18 C 1.48162 * 120.00288 * 352.33091 * 16 15 14 19 19 C 1.39237 * 119.68786 * 170.53892 * 18 16 15 20 20 C 1.38713 * 119.18973 * 179.97438 * 19 18 16 21 21 C 1.38411 * 118.55314 * 359.97438 * 20 19 18 22 22 C 1.39266 * 119.30207 * 0.02562 * 21 20 19 23 23 N 1.39819 * 119.61849 * 180.02562 * 22 21 20 24 24 C 1.35838 * 126.10471 * 179.71322 * 23 22 21 25 25 C 1.35278 * 107.61524 * 179.87779 * 24 23 22 26 26 C 1.39955 * 107.96903 * 0.38941 * 25 24 23 27 27 N 1.30817 * 108.36785 * 359.75561 * 26 25 24 28 28 N 1.31975 * 120.76342 * 359.74497 * 22 21 20 29 29 C 1.46925 * 118.74051 * 53.60658 * 15 14 13 30 30 H 0.97003 * 119.99325 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99696 * 0.02562 * 9 7 2 32 32 H 1.09010 * 109.50536 * 58.65627 * 12 10 9 33 33 H 1.09001 * 109.45354 * 298.67919 * 12 10 9 34 34 H 1.09001 * 109.50168 * 301.38040 * 13 12 10 35 35 H 1.09000 * 109.49807 * 181.31495 * 13 12 10 36 36 H 1.09007 * 109.58392 * 65.13573 * 14 13 12 37 37 H 1.08994 * 109.58859 * 185.41461 * 14 13 12 38 38 H 1.07993 * 120.40537 * 0.02562 * 19 18 16 39 39 H 1.07992 * 120.72417 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.35135 * 179.97438 * 21 20 19 41 41 H 1.08008 * 126.19208 * 359.97438 * 24 23 22 42 42 H 1.08004 * 126.01623 * 180.15203 * 25 24 23 43 43 H 1.07999 * 125.82015 * 179.72477 * 26 25 24 44 44 H 1.09001 * 109.58943 * 66.17989 * 29 15 14 45 45 H 1.09001 * 109.59214 * 186.60434 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9682 -3.5514 -0.5908 12 6 1.1798 -4.7543 -0.6075 13 6 1.9570 -6.0724 -0.6375 14 6 2.3205 -6.4797 0.7938 15 7 3.0404 -5.3698 1.4329 16 6 4.2445 -5.5708 2.0041 17 8 4.8923 -4.6241 2.4051 18 6 4.7782 -6.9459 2.1432 19 6 6.0965 -7.1361 2.5492 20 6 6.5854 -8.4280 2.6766 21 6 5.7393 -9.4864 2.3941 22 6 4.4316 -9.2252 1.9928 23 7 3.5711 -10.2894 1.7063 24 6 2.2754 -10.1871 1.3116 25 6 1.8005 -11.4417 1.1363 26 6 2.8303 -12.3394 1.4402 27 7 3.8896 -11.6517 1.7811 28 7 3.9934 -7.9850 1.8849 29 6 2.4226 -4.0368 1.4380 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 0.8986 -4.4754 -1.6231 33 1 0.2812 -4.8763 -0.0027 34 1 2.8682 -5.9443 -1.2218 35 1 1.3401 -6.8482 -1.0910 36 1 1.4109 -6.6962 1.3543 37 1 2.9554 -7.3653 0.7716 38 1 6.7303 -6.2883 2.7631 39 1 7.6037 -8.6041 2.9900 40 1 6.0898 -10.5040 2.4833 41 1 1.7244 -9.2701 1.1629 42 1 0.8014 -11.7043 0.8214 43 1 2.7620 -13.4165 1.4005 44 1 1.5214 -4.0540 2.0510 45 1 3.1270 -3.3090 1.8407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000157973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:24 Heat of formation + Delta-G solvation = 127.585870 kcal Electronic energy + Delta-G solvation = -29354.884746 eV Core-core repulsion = 25375.797691 eV Total energy + Delta-G solvation = -3979.087055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.99577 -40.83869 -39.26789 -37.32908 -34.61288 -34.02930 -33.19984 -32.12519 -31.13476 -30.72464 -29.87896 -28.25614 -26.05218 -24.54872 -24.10989 -23.84469 -21.86956 -21.73330 -21.30055 -20.39665 -19.41166 -18.32668 -17.49185 -17.07398 -16.59373 -16.14019 -16.06387 -15.65141 -15.23979 -15.01038 -14.62842 -14.35528 -14.23336 -13.87833 -13.69468 -13.58868 -13.52606 -13.33838 -13.11662 -12.74833 -12.58038 -12.35166 -12.22657 -11.47656 -11.26429 -11.08558 -10.87201 -10.83016 -10.80665 -10.57236 -10.42897 -10.23669 -10.19234 -9.82301 -9.72507 -9.56948 -9.19561 -9.05959 -8.70444 -8.33062 -6.99721 -5.78159 -3.07939 0.16064 0.43632 1.63371 1.67105 2.38711 2.68141 3.01790 3.46214 3.49991 3.51008 3.51946 3.73089 4.01052 4.37718 4.48440 4.54634 4.59290 4.62476 4.81186 4.95895 5.11213 5.15076 5.23500 5.28470 5.35022 5.49511 5.51987 5.56236 5.64714 5.67634 5.82241 5.85326 5.93773 6.05126 6.11397 6.16612 6.19003 6.25749 6.37967 6.49540 6.64197 6.76049 6.82726 6.87136 7.01603 7.35044 7.60183 7.71885 8.21242 8.40184 9.51787 10.05787 10.41270 11.44041 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018357 B = 0.002701 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.977841 B =10362.980321 C =11672.945430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.170 3.830 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.131 4.131 14 C 0.073 3.927 15 N -0.580 5.580 16 C 0.562 3.438 17 O -0.528 6.528 18 C 0.123 3.877 19 C -0.124 4.124 20 C -0.054 4.054 21 C -0.147 4.147 22 C 0.363 3.637 23 N -0.327 5.327 24 C 0.079 3.921 25 C -0.263 4.263 26 C 0.065 3.935 27 N -0.286 5.286 28 N -0.472 5.472 29 C 0.089 3.911 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.135 0.865 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.184 0.816 42 H 0.158 0.842 43 H 0.194 0.806 44 H 0.065 0.935 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.490 -27.152 3.182 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.170 4.170 14 C -0.050 4.050 15 N -0.311 5.311 16 C 0.347 3.653 17 O -0.405 6.405 18 C -0.015 4.015 19 C -0.146 4.146 20 C -0.080 4.080 21 C -0.169 4.169 22 C 0.134 3.866 23 N -0.105 5.105 24 C -0.063 4.063 25 C -0.292 4.292 26 C -0.123 4.123 27 N -0.105 5.105 28 N -0.189 5.189 29 C -0.035 4.035 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.152 0.848 38 H 0.175 0.825 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.201 0.799 42 H 0.176 0.824 43 H 0.210 0.790 44 H 0.083 0.917 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.309 -26.245 3.511 27.752 hybrid contribution -0.205 0.780 -0.027 0.807 sum 8.104 -25.465 3.484 26.950 Atomic orbital electron populations 1.69657 1.05119 1.25873 1.57413 1.24748 0.95519 0.97750 1.02661 0.86260 0.78551 0.83372 0.77995 1.21209 1.21683 1.21101 1.19233 0.91087 0.83979 1.43102 0.91072 1.42374 1.05802 0.99563 1.88076 1.20482 0.94956 0.86472 0.92249 0.93131 1.21854 0.98686 0.94279 1.01682 1.21932 1.00550 0.97980 0.96560 1.22932 0.98302 0.91324 0.92453 1.48121 1.17719 1.11612 1.53621 1.17790 0.81808 0.86255 0.79442 1.90819 1.57854 1.41318 1.50486 1.21155 0.91338 0.91797 0.97204 1.22190 0.95508 0.98933 0.97942 1.21586 1.00395 0.91111 0.94916 1.21795 0.92124 1.02033 1.00990 1.17821 0.87666 0.84780 0.96307 1.45758 1.08676 1.03923 1.52132 1.23039 0.84854 1.00928 0.97435 1.21704 1.02209 0.91269 1.13984 1.24178 0.90493 1.00802 0.96843 1.77445 1.23853 0.84431 1.24766 1.66989 1.37005 0.97511 1.17366 1.22907 0.97828 0.81288 1.01447 0.93415 0.78058 0.91540 0.92074 0.92011 0.91185 0.91971 0.84835 0.82472 0.82918 0.83020 0.79863 0.82436 0.78973 0.91702 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.81 9.93 -15.06 -0.15 -6.96 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.56 16 9 N -0.72 -17.93 5.13 -53.28 -0.27 -18.21 16 10 C 0.17 3.42 2.92 -67.78 -0.20 3.22 16 11 H 0.05 1.09 8.08 -51.93 -0.42 0.68 16 12 C -0.13 -2.04 5.36 -26.66 -0.14 -2.19 16 13 C -0.13 -1.69 6.08 -26.61 -0.16 -1.85 16 14 C 0.07 0.93 5.79 -3.71 -0.02 0.91 16 15 N -0.58 -9.34 2.97 -173.76 -0.52 -9.86 16 16 C 0.56 9.21 7.65 -12.19 -0.09 9.11 16 17 O -0.53 -10.28 15.79 5.35 0.08 -10.20 16 18 C 0.12 1.59 6.58 -83.02 -0.55 1.05 16 19 C -0.12 -1.28 9.63 -39.03 -0.38 -1.66 16 20 C -0.05 -0.41 10.16 -39.34 -0.40 -0.81 16 21 C -0.15 -1.30 9.70 -39.14 -0.38 -1.68 16 22 C 0.36 3.92 7.55 -154.53 -1.17 2.75 16 23 N -0.33 -3.41 3.81 -12.10 -0.05 -3.45 16 24 C 0.08 0.70 11.10 -16.83 -0.19 0.51 16 25 C -0.26 -1.89 10.80 -39.99 -0.43 -2.33 16 26 C 0.07 0.48 12.02 -17.34 -0.21 0.27 16 27 N -0.29 -2.83 11.83 30.64 0.36 -2.47 16 28 N -0.47 -5.55 5.63 -8.85 -0.05 -5.60 16 29 C 0.09 1.72 6.03 -3.71 -0.02 1.69 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 31 H 0.39 10.11 7.80 -40.82 -0.32 9.79 16 32 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 37 H 0.14 1.60 3.66 -83.96 -0.31 1.29 16 38 H 0.16 1.54 7.66 -52.49 -0.40 1.14 16 39 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.15 1.16 7.68 -52.49 -0.40 0.75 16 41 H 0.18 1.39 7.60 -52.48 -0.40 0.99 16 42 H 0.16 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.19 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.09 2.02 7.00 -51.93 -0.36 1.66 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -33.84 374.52 -9.64 -43.48 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.96 Total: 8.70 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -4.58 Total: 1.64 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: 0.20 Total: -66.98 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.84 -9.64 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000157973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.063 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds