Wall clock time and date at job start Sat Apr 11 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00313 * 2 1 4 4 H 1.48493 * 109.47267 * 240.00244 * 3 2 1 5 5 H 1.48504 * 109.46812 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47029 * 119.99829 * 3 2 1 7 7 C 1.38810 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00334 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00222 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00487 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.49277 * 324.93579 * 10 9 7 12 12 C 1.53102 * 109.51763 * 204.87340 * 10 9 7 13 13 C 1.53037 * 109.50493 * 178.68128 * 12 10 9 14 14 C 1.53195 * 109.33975 * 61.34720 * 13 12 10 15 15 N 1.46920 * 108.77415 * 305.35119 * 14 13 12 16 16 C 1.34774 * 120.62932 * 233.58179 * 15 14 13 17 17 O 1.21520 * 119.99908 * 172.33089 * 16 15 14 18 18 C 1.48162 * 120.00288 * 352.33091 * 16 15 14 19 19 C 1.39237 * 119.68786 * 170.53892 * 18 16 15 20 20 C 1.38713 * 119.18973 * 179.97438 * 19 18 16 21 21 C 1.38411 * 118.55314 * 359.97438 * 20 19 18 22 22 C 1.39266 * 119.30207 * 0.02562 * 21 20 19 23 23 N 1.39819 * 119.61849 * 180.02562 * 22 21 20 24 24 C 1.35838 * 126.10471 * 179.71322 * 23 22 21 25 25 C 1.35278 * 107.61524 * 179.87779 * 24 23 22 26 26 C 1.39955 * 107.96903 * 0.38941 * 25 24 23 27 27 N 1.30817 * 108.36785 * 359.75561 * 26 25 24 28 28 N 1.31975 * 120.76342 * 359.74497 * 22 21 20 29 29 C 1.46925 * 118.74051 * 53.60658 * 15 14 13 30 30 H 0.97003 * 119.99325 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99696 * 0.02562 * 9 7 2 32 32 H 1.09010 * 109.50536 * 58.65627 * 12 10 9 33 33 H 1.09001 * 109.45354 * 298.67919 * 12 10 9 34 34 H 1.09001 * 109.50168 * 301.38040 * 13 12 10 35 35 H 1.09000 * 109.49807 * 181.31495 * 13 12 10 36 36 H 1.09007 * 109.58392 * 65.13573 * 14 13 12 37 37 H 1.08994 * 109.58859 * 185.41461 * 14 13 12 38 38 H 1.07993 * 120.40537 * 0.02562 * 19 18 16 39 39 H 1.07992 * 120.72417 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.35135 * 179.97438 * 21 20 19 41 41 H 1.08008 * 126.19208 * 359.97438 * 24 23 22 42 42 H 1.08004 * 126.01623 * 180.15203 * 25 24 23 43 43 H 1.07999 * 125.82015 * 179.72477 * 26 25 24 44 44 H 1.09001 * 109.58943 * 66.17989 * 29 15 14 45 45 H 1.09001 * 109.59214 * 186.60434 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9682 -3.5514 -0.5908 12 6 1.1798 -4.7543 -0.6075 13 6 1.9570 -6.0724 -0.6375 14 6 2.3205 -6.4797 0.7938 15 7 3.0404 -5.3698 1.4329 16 6 4.2445 -5.5708 2.0041 17 8 4.8923 -4.6241 2.4051 18 6 4.7782 -6.9459 2.1432 19 6 6.0965 -7.1361 2.5492 20 6 6.5854 -8.4280 2.6766 21 6 5.7393 -9.4864 2.3941 22 6 4.4316 -9.2252 1.9928 23 7 3.5711 -10.2894 1.7063 24 6 2.2754 -10.1871 1.3116 25 6 1.8005 -11.4417 1.1363 26 6 2.8303 -12.3394 1.4402 27 7 3.8896 -11.6517 1.7811 28 7 3.9934 -7.9850 1.8849 29 6 2.4226 -4.0368 1.4380 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 0.8986 -4.4754 -1.6231 33 1 0.2812 -4.8763 -0.0027 34 1 2.8682 -5.9443 -1.2218 35 1 1.3401 -6.8482 -1.0910 36 1 1.4109 -6.6962 1.3543 37 1 2.9554 -7.3653 0.7716 38 1 6.7303 -6.2883 2.7631 39 1 7.6037 -8.6041 2.9900 40 1 6.0898 -10.5040 2.4833 41 1 1.7244 -9.2701 1.1629 42 1 0.8014 -11.7043 0.8214 43 1 2.7620 -13.4165 1.4005 44 1 1.5214 -4.0540 2.0510 45 1 3.1270 -3.3090 1.8407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000157973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:23 Heat of formation + Delta-G solvation = 106.956651 kcal Electronic energy + Delta-G solvation = -29355.779296 eV Core-core repulsion = 25375.797691 eV Total energy + Delta-G solvation = -3979.981605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.68874 -41.76396 -40.37700 -38.74606 -36.30796 -34.74344 -34.38131 -33.45293 -32.78724 -31.35774 -30.65673 -29.94169 -27.22971 -25.93033 -25.20571 -25.02476 -23.30680 -22.62033 -21.95684 -21.54504 -20.59126 -19.24154 -19.05394 -18.59824 -17.37735 -17.15289 -16.99402 -16.85135 -16.48627 -16.22972 -15.66926 -15.62803 -15.49959 -15.22839 -15.06288 -14.63825 -14.53406 -14.41205 -14.03500 -13.95445 -13.66078 -13.59953 -13.32010 -13.08420 -12.88611 -12.55654 -12.28772 -12.19336 -11.93581 -11.86829 -11.79824 -11.60513 -11.53308 -11.38755 -11.12069 -11.09067 -10.22752 -10.18790 -9.81876 -9.36225 -9.03912 -7.99540 -5.29197 -0.64462 -0.30925 0.96307 1.00305 1.43713 1.46653 1.52846 1.61153 1.80635 1.86735 2.52530 2.60763 2.83167 3.33106 3.35254 3.50656 3.76909 3.80065 3.86125 3.95858 4.05984 4.09029 4.10273 4.25459 4.31523 4.35078 4.37484 4.53170 4.69021 4.70059 4.74330 4.83535 4.88584 4.95348 5.01520 5.06197 5.09012 5.12133 5.25346 5.33929 5.41436 5.44381 5.57342 5.62161 6.00866 6.10088 6.22762 6.34828 6.67996 6.94524 7.29465 8.00658 8.26889 9.22908 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018357 B = 0.002701 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.977841 B =10362.980321 C =11672.945430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.969 3.031 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.247 4.247 8 H 0.066 0.934 9 N -0.728 5.728 10 C 0.169 3.831 11 H 0.031 0.969 12 C -0.118 4.118 13 C -0.122 4.122 14 C 0.073 3.927 15 N -0.583 5.583 16 C 0.557 3.443 17 O -0.571 6.571 18 C 0.101 3.899 19 C -0.125 4.125 20 C -0.033 4.033 21 C -0.140 4.140 22 C 0.353 3.647 23 N -0.342 5.342 24 C 0.056 3.944 25 C -0.256 4.256 26 C 0.070 3.930 27 N -0.313 5.313 28 N -0.480 5.480 29 C 0.105 3.895 30 H 0.253 0.747 31 H 0.378 0.622 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.195 0.805 40 H 0.168 0.832 41 H 0.191 0.809 42 H 0.183 0.817 43 H 0.228 0.772 44 H 0.062 0.938 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.213 -30.550 3.042 31.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.798 3.202 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.368 5.368 10 C 0.059 3.941 11 H 0.049 0.951 12 C -0.156 4.156 13 C -0.160 4.160 14 C -0.049 4.049 15 N -0.313 5.313 16 C 0.345 3.655 17 O -0.451 6.451 18 C -0.036 4.036 19 C -0.147 4.147 20 C -0.059 4.059 21 C -0.162 4.162 22 C 0.124 3.876 23 N -0.120 5.120 24 C -0.084 4.084 25 C -0.284 4.284 26 C -0.118 4.118 27 N -0.132 5.132 28 N -0.197 5.197 29 C -0.021 4.021 30 H 0.062 0.938 31 H 0.210 0.790 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.167 0.833 38 H 0.176 0.824 39 H 0.212 0.788 40 H 0.186 0.814 41 H 0.208 0.792 42 H 0.201 0.799 43 H 0.244 0.756 44 H 0.081 0.919 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.042 -29.705 3.359 31.231 hybrid contribution -0.411 1.610 0.033 1.662 sum 8.631 -28.095 3.391 29.586 Atomic orbital electron populations 1.69791 1.06339 1.26285 1.58963 1.25500 0.96410 1.00835 1.03286 0.85285 0.77368 0.79477 0.78097 1.20383 1.21541 1.20846 1.19488 0.91072 0.85415 1.41898 0.91629 1.42492 1.05513 1.00514 1.88304 1.20618 0.94622 0.86112 0.92713 0.95126 1.21759 0.98465 0.94397 1.00963 1.21917 1.00380 0.96975 0.96753 1.23201 0.98871 0.90570 0.92217 1.48155 1.18095 1.10973 1.54059 1.18350 0.81258 0.87619 0.78320 1.90780 1.58973 1.43181 1.52159 1.20599 0.92523 0.90157 1.00313 1.22315 0.94464 1.00393 0.97528 1.21981 1.01859 0.89229 0.92816 1.22090 0.91415 1.03098 0.99636 1.18069 0.88659 0.84518 0.96385 1.45879 1.09095 1.03980 1.53084 1.23389 0.84753 1.02088 0.98143 1.22086 1.03184 0.90551 1.12555 1.24858 0.89669 1.02362 0.94955 1.77420 1.25265 0.84365 1.26136 1.66679 1.37065 0.97792 1.18127 1.22350 0.96830 0.82671 1.00209 0.93786 0.78966 0.91977 0.91372 0.92668 0.87351 0.90660 0.83276 0.82448 0.78765 0.81446 0.79233 0.79945 0.75577 0.91945 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.45 13.06 21.65 0.28 -59.17 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 3 Si 0.97 47.70 29.55 68.60 2.03 49.73 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.25 -14.31 9.93 84.03 0.83 -13.47 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.73 -37.79 5.13 -322.49 -1.65 -39.44 16 10 C 0.17 7.07 2.92 45.09 0.13 7.20 16 11 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 12 C -0.12 -3.76 5.36 30.64 0.16 -3.59 16 13 C -0.12 -2.94 6.08 30.67 0.19 -2.75 16 14 C 0.07 1.79 5.79 86.36 0.50 2.29 16 15 N -0.58 -19.26 2.97 -821.96 -2.44 -21.70 16 16 C 0.56 18.93 7.65 86.88 0.66 19.59 16 17 O -0.57 -23.55 15.79 -3.78 -0.06 -23.61 16 18 C 0.10 2.58 6.58 41.88 0.28 2.86 16 19 C -0.13 -2.45 9.63 22.62 0.22 -2.23 16 20 C -0.03 -0.41 10.16 22.42 0.23 -0.19 16 21 C -0.14 -2.11 9.70 22.56 0.22 -1.89 16 22 C 0.35 7.00 7.55 132.94 1.00 8.01 16 23 N -0.34 -6.43 3.81 -192.18 -0.73 -7.16 16 24 C 0.06 0.87 11.10 83.39 0.93 1.80 16 25 C -0.26 -2.88 10.80 22.00 0.24 -2.65 16 26 C 0.07 0.80 12.02 85.26 1.02 1.82 16 27 N -0.31 -5.41 11.83 -56.98 -0.67 -6.09 16 28 N -0.48 -10.78 5.63 -181.91 -1.02 -11.80 16 29 C 0.10 4.23 6.03 86.36 0.52 4.75 16 30 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.38 20.52 7.80 -92.71 -0.72 19.79 16 32 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.15 3.37 3.66 -65.63 -0.24 3.13 16 38 H 0.16 3.03 7.66 -2.91 -0.02 3.01 16 39 H 0.20 0.76 8.06 -2.91 -0.02 0.73 16 40 H 0.17 2.01 7.68 -2.91 -0.02 1.99 16 41 H 0.19 2.48 7.60 -2.91 -0.02 2.46 16 42 H 0.18 1.02 8.06 -2.91 -0.02 0.99 16 43 H 0.23 0.69 8.06 -2.91 -0.02 0.67 16 44 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.05 2.61 7.00 -2.39 -0.02 2.59 16 Total: -1.00 -77.04 374.52 3.40 -73.64 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.07 Total: 27.55 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 7.60 Total: 18.05 kcal Atomic # 7 Polarization: -139.12 SS G_CDS: -6.24 Total: -145.36 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.06 Total: -23.61 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -77.04 3.40 -73.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000157973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.600 kcal (2) G-P(sol) polarization free energy of solvation -77.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds