Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00026 * 2 1 4 4 H 1.48496 * 109.47668 * 268.40439 * 3 2 1 5 5 H 1.48502 * 109.47209 * 28.40542 * 3 2 1 6 6 H 1.48504 * 109.47021 * 148.40182 * 3 2 1 7 7 C 1.38809 * 119.99815 * 180.28346 * 2 1 3 8 8 H 1.08001 * 119.99749 * 174.67117 * 7 2 1 9 9 N 1.36935 * 120.00244 * 354.67038 * 7 2 1 10 10 C 1.46493 * 120.00209 * 185.04118 * 9 7 2 11 11 H 1.08998 * 109.49828 * 27.63611 * 10 9 7 12 12 C 1.53039 * 109.50106 * 147.70023 * 10 9 7 13 13 C 1.53040 * 109.54323 * 181.32045 * 12 10 9 14 14 C 1.53192 * 109.30722 * 298.63410 * 13 12 10 15 15 N 1.46921 * 108.77969 * 54.63587 * 14 13 12 16 16 C 1.34777 * 120.63357 * 126.40916 * 15 14 13 17 17 O 1.21517 * 119.99932 * 359.97438 * 16 15 14 18 18 C 1.48163 * 120.00160 * 179.97438 * 16 15 14 19 19 C 1.39234 * 119.68895 * 157.69028 * 18 16 15 20 20 C 1.38706 * 119.19186 * 179.97438 * 19 18 16 21 21 C 1.38416 * 118.55667 * 0.02562 * 20 19 18 22 22 C 1.39262 * 119.30059 * 359.97438 * 21 20 19 23 23 N 1.39809 * 119.62123 * 180.02562 * 22 21 20 24 24 C 1.35850 * 126.10541 * 183.60982 * 23 22 21 25 25 C 1.35278 * 107.61316 * 179.97438 * 24 23 22 26 26 C 1.39961 * 107.97023 * 359.97438 * 25 24 23 27 27 N 1.30814 * 108.36772 * 359.75542 * 26 25 24 28 28 N 1.31990 * 120.75902 * 359.72524 * 22 21 20 29 29 C 1.46930 * 118.73629 * 306.38880 * 15 14 13 30 30 H 0.97002 * 119.99815 * 359.71894 * 1 2 3 31 31 H 0.97002 * 119.99780 * 5.04347 * 9 7 2 32 32 H 1.09005 * 109.45492 * 301.34003 * 12 10 9 33 33 H 1.09003 * 109.46005 * 61.30963 * 12 10 9 34 34 H 1.08995 * 109.49883 * 58.58415 * 13 12 10 35 35 H 1.08994 * 109.50089 * 178.68449 * 13 12 10 36 36 H 1.09005 * 109.58617 * 174.42100 * 14 13 12 37 37 H 1.09006 * 109.58577 * 294.84364 * 14 13 12 38 38 H 1.08002 * 120.40099 * 359.97255 * 19 18 16 39 39 H 1.08001 * 120.72111 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.34831 * 180.02562 * 21 20 19 41 41 H 1.07997 * 126.19087 * 359.97438 * 24 23 22 42 42 H 1.07999 * 126.01315 * 180.02562 * 25 24 23 43 43 H 1.07994 * 125.81565 * 179.97438 * 26 25 24 44 44 H 1.08993 * 109.58687 * 293.81708 * 29 15 14 45 45 H 1.09002 * 109.58506 * 173.39691 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5315 2.0270 -1.3994 5 1 1.4312 2.6622 0.6660 6 1 3.5304 1.4501 0.7336 7 6 2.0102 -1.2021 -0.0059 8 1 3.0867 -1.2037 -0.0928 9 7 1.3299 -2.3860 0.0983 10 6 2.0671 -3.6476 0.2033 11 1 3.0388 -3.4641 0.6619 12 6 1.2737 -4.6327 1.0648 13 6 2.0582 -5.9396 1.2023 14 6 2.2557 -6.5601 -0.1843 15 7 2.8885 -5.5659 -1.0616 16 6 4.0195 -5.8625 -1.7320 17 8 4.5257 -6.9608 -1.6135 18 6 4.6456 -4.8494 -2.6134 19 6 5.9980 -4.9507 -2.9285 20 6 6.5735 -3.9970 -3.7550 21 6 5.7771 -2.9732 -4.2384 22 6 4.4310 -2.9314 -3.8839 23 7 3.6205 -1.9006 -4.3688 24 6 2.3152 -1.6933 -4.0543 25 6 1.9003 -0.5975 -4.7303 26 6 2.9805 -0.1181 -5.4802 27 7 4.0112 -0.8932 -5.2605 28 7 3.9104 -3.8569 -3.1000 29 6 2.2648 -4.2422 -1.1946 30 1 -0.4850 0.8401 0.0041 31 1 0.3599 -2.3892 0.1027 32 1 1.1104 -4.2015 2.0525 33 1 0.3119 -4.8346 0.5932 34 1 3.0301 -5.7349 1.6511 35 1 1.5033 -6.6321 1.8351 36 1 2.8974 -7.4375 -0.1040 37 1 1.2887 -6.8485 -0.5967 38 1 6.5918 -5.7621 -2.5341 39 1 7.6203 -4.0515 -4.0150 40 1 6.1951 -2.2154 -4.8845 41 1 1.7171 -2.2946 -3.3857 42 1 0.9101 -0.1676 -4.6966 43 1 2.9666 0.7467 -6.1269 44 1 1.2987 -4.3416 -1.6894 45 1 2.9124 -3.5903 -1.7808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000157975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = 124.773986 kcal Electronic energy + Delta-G solvation = -30607.939738 eV Core-core repulsion = 26628.730751 eV Total energy + Delta-G solvation = -3979.208987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.51753 -40.55078 -39.15366 -37.35344 -34.34726 -33.62644 -33.33501 -32.01761 -31.17545 -30.17573 -29.42896 -28.22783 -25.89976 -24.22621 -24.06009 -23.79566 -22.08040 -21.05002 -20.79374 -20.25931 -19.28253 -17.93172 -17.40367 -17.11452 -16.32434 -15.92454 -15.78792 -15.54658 -15.06141 -14.59852 -14.55172 -14.24342 -14.00224 -13.78525 -13.53956 -13.37030 -13.32472 -13.20751 -12.63940 -12.53471 -12.50230 -12.32594 -12.13998 -11.38722 -11.07000 -10.87803 -10.77735 -10.72750 -10.57074 -10.49345 -10.36573 -10.25439 -10.09161 -10.01312 -9.73241 -9.22304 -8.98834 -8.87879 -8.40694 -8.18597 -7.03279 -5.84882 -3.13687 0.47820 0.79099 2.10514 2.15619 2.81392 3.00551 3.06620 3.38592 3.44787 3.45569 3.71525 4.06047 4.37940 4.52000 4.63723 4.81248 4.89615 5.04645 5.12069 5.18688 5.25767 5.30195 5.34555 5.46574 5.57317 5.59764 5.75615 5.79158 5.82017 5.91506 5.93333 5.98808 6.09474 6.19220 6.22555 6.24838 6.28546 6.34604 6.49422 6.68537 6.71593 6.92321 6.94851 7.22100 7.27472 7.56954 7.64678 7.83864 8.20294 8.33755 9.45905 10.00139 10.36594 11.36939 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007636 B = 0.006321 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3666.071724 B = 4428.402980 C = 7115.885702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.002 4.002 3 Si 0.896 3.104 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.240 4.240 8 H 0.064 0.936 9 N -0.715 5.715 10 C 0.166 3.834 11 H 0.051 0.949 12 C -0.129 4.129 13 C -0.129 4.129 14 C 0.110 3.890 15 N -0.581 5.581 16 C 0.571 3.429 17 O -0.546 6.546 18 C 0.119 3.881 19 C -0.133 4.133 20 C -0.057 4.057 21 C -0.149 4.149 22 C 0.377 3.623 23 N -0.331 5.331 24 C 0.103 3.897 25 C -0.261 4.261 26 C 0.068 3.932 27 N -0.297 5.297 28 N -0.465 5.465 29 C 0.057 3.943 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.187 0.813 42 H 0.157 0.843 43 H 0.190 0.810 44 H 0.061 0.939 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.262 -8.482 -7.572 13.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.727 3.273 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.371 4.371 8 H 0.082 0.918 9 N -0.356 5.356 10 C 0.054 3.946 11 H 0.069 0.931 12 C -0.168 4.168 13 C -0.168 4.168 14 C -0.012 4.012 15 N -0.311 5.311 16 C 0.357 3.643 17 O -0.424 6.424 18 C -0.020 4.020 19 C -0.155 4.155 20 C -0.083 4.083 21 C -0.171 4.171 22 C 0.148 3.852 23 N -0.109 5.109 24 C -0.038 4.038 25 C -0.289 4.289 26 C -0.121 4.121 27 N -0.116 5.116 28 N -0.181 5.181 29 C -0.068 4.068 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.169 0.831 39 H 0.168 0.832 40 H 0.169 0.831 41 H 0.204 0.796 42 H 0.174 0.826 43 H 0.207 0.793 44 H 0.080 0.920 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.967 -9.143 -7.490 14.253 hybrid contribution -0.132 1.389 0.095 1.399 sum 7.834 -7.754 -7.395 13.274 Atomic orbital electron populations 1.69655 1.04966 1.25717 1.57055 1.24651 0.95361 0.97325 1.02523 0.86371 0.78848 0.84350 0.77757 1.21447 1.21618 1.20993 1.19107 0.91049 0.84042 1.42938 0.91752 1.42313 1.05709 0.99998 1.87560 1.20540 0.95435 0.86678 0.91943 0.93112 1.21918 0.98929 0.94732 1.01186 1.21878 1.01144 0.97743 0.95992 1.21673 0.97956 0.91686 0.89933 1.48159 1.23871 1.15854 1.43261 1.17817 0.80632 0.85943 0.79957 1.90749 1.63525 1.22317 1.65792 1.20878 0.91607 0.92425 0.97097 1.22027 0.94662 1.00294 0.98470 1.21498 1.00576 0.92094 0.94161 1.21801 0.92124 1.00830 1.02379 1.17769 0.87707 0.87371 0.92387 1.45701 1.08430 1.20946 1.35836 1.23078 0.84473 0.98307 0.97932 1.21672 1.01962 1.00161 1.05068 1.24104 0.90648 0.98600 0.98707 1.77330 1.23422 1.00338 1.10464 1.67062 1.38570 1.02579 1.09909 1.23932 0.99356 0.81661 1.01818 0.93437 0.78091 0.91515 0.92147 0.91720 0.90995 0.89322 0.91383 0.83058 0.83190 0.83070 0.79554 0.82557 0.79280 0.92039 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.31 13.07 55.49 0.73 -25.59 16 2 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 3 Si 0.90 21.91 29.56 -169.99 -5.02 16.88 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.29 9.91 -15.06 -0.15 -6.44 16 8 H 0.06 1.72 7.83 -52.49 -0.41 1.30 16 9 N -0.72 -16.61 5.07 -53.31 -0.27 -16.88 16 10 C 0.17 3.15 2.96 -67.81 -0.20 2.95 16 11 H 0.05 1.05 8.02 -51.93 -0.42 0.64 16 12 C -0.13 -2.05 5.40 -26.69 -0.14 -2.20 16 13 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 14 C 0.11 1.50 6.43 -3.71 -0.02 1.48 16 15 N -0.58 -9.27 2.97 -173.76 -0.52 -9.78 16 16 C 0.57 9.42 7.61 -12.18 -0.09 9.33 16 17 O -0.55 -9.66 15.95 5.35 0.09 -9.58 16 18 C 0.12 1.83 6.43 -83.02 -0.53 1.29 16 19 C -0.13 -1.65 9.62 -39.04 -0.38 -2.03 16 20 C -0.06 -0.60 10.16 -39.34 -0.40 -1.00 16 21 C -0.15 -1.92 9.70 -39.14 -0.38 -2.30 16 22 C 0.38 6.01 7.55 -154.53 -1.17 4.84 16 23 N -0.33 -5.58 3.81 -12.10 -0.05 -5.63 16 24 C 0.10 1.77 11.10 -16.83 -0.19 1.58 16 25 C -0.26 -4.07 10.80 -39.99 -0.43 -4.50 16 26 C 0.07 0.96 12.02 -17.34 -0.21 0.75 16 27 N -0.30 -4.72 11.84 30.64 0.36 -4.36 16 28 N -0.46 -7.60 5.90 -8.85 -0.05 -7.65 16 29 C 0.06 0.99 5.59 -3.71 -0.02 0.97 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.39 9.50 7.89 -40.82 -0.32 9.17 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.15 1.64 7.80 -52.49 -0.41 1.23 16 39 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.15 1.77 7.69 -52.49 -0.40 1.37 16 41 H 0.19 3.33 7.99 -52.49 -0.42 2.91 16 42 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 43 H 0.19 1.88 8.06 -52.49 -0.42 1.46 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.13 2.50 3.96 -76.45 -0.30 2.20 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -31.07 375.85 -9.63 -40.70 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -5.99 Total: 13.50 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -4.57 Total: 2.72 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: 0.20 Total: -69.89 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.07 -9.63 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000157975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.478 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds