Wall clock time and date at job start Sat Apr 11 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00026 * 2 1 4 4 H 1.48496 * 109.47668 * 268.40439 * 3 2 1 5 5 H 1.48502 * 109.47209 * 28.40542 * 3 2 1 6 6 H 1.48504 * 109.47021 * 148.40182 * 3 2 1 7 7 C 1.38809 * 119.99815 * 180.28346 * 2 1 3 8 8 H 1.08001 * 119.99749 * 174.67117 * 7 2 1 9 9 N 1.36935 * 120.00244 * 354.67038 * 7 2 1 10 10 C 1.46493 * 120.00209 * 185.04118 * 9 7 2 11 11 H 1.08998 * 109.49828 * 27.63611 * 10 9 7 12 12 C 1.53039 * 109.50106 * 147.70023 * 10 9 7 13 13 C 1.53040 * 109.54323 * 181.32045 * 12 10 9 14 14 C 1.53192 * 109.30722 * 298.63410 * 13 12 10 15 15 N 1.46921 * 108.77969 * 54.63587 * 14 13 12 16 16 C 1.34777 * 120.63357 * 126.40916 * 15 14 13 17 17 O 1.21517 * 119.99932 * 359.97438 * 16 15 14 18 18 C 1.48163 * 120.00160 * 179.97438 * 16 15 14 19 19 C 1.39234 * 119.68895 * 157.69028 * 18 16 15 20 20 C 1.38706 * 119.19186 * 179.97438 * 19 18 16 21 21 C 1.38416 * 118.55667 * 0.02562 * 20 19 18 22 22 C 1.39262 * 119.30059 * 359.97438 * 21 20 19 23 23 N 1.39809 * 119.62123 * 180.02562 * 22 21 20 24 24 C 1.35850 * 126.10541 * 183.60982 * 23 22 21 25 25 C 1.35278 * 107.61316 * 179.97438 * 24 23 22 26 26 C 1.39961 * 107.97023 * 359.97438 * 25 24 23 27 27 N 1.30814 * 108.36772 * 359.75542 * 26 25 24 28 28 N 1.31990 * 120.75902 * 359.72524 * 22 21 20 29 29 C 1.46930 * 118.73629 * 306.38880 * 15 14 13 30 30 H 0.97002 * 119.99815 * 359.71894 * 1 2 3 31 31 H 0.97002 * 119.99780 * 5.04347 * 9 7 2 32 32 H 1.09005 * 109.45492 * 301.34003 * 12 10 9 33 33 H 1.09003 * 109.46005 * 61.30963 * 12 10 9 34 34 H 1.08995 * 109.49883 * 58.58415 * 13 12 10 35 35 H 1.08994 * 109.50089 * 178.68449 * 13 12 10 36 36 H 1.09005 * 109.58617 * 174.42100 * 14 13 12 37 37 H 1.09006 * 109.58577 * 294.84364 * 14 13 12 38 38 H 1.08002 * 120.40099 * 359.97255 * 19 18 16 39 39 H 1.08001 * 120.72111 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.34831 * 180.02562 * 21 20 19 41 41 H 1.07997 * 126.19087 * 359.97438 * 24 23 22 42 42 H 1.07999 * 126.01315 * 180.02562 * 25 24 23 43 43 H 1.07994 * 125.81565 * 179.97438 * 26 25 24 44 44 H 1.08993 * 109.58687 * 293.81708 * 29 15 14 45 45 H 1.09002 * 109.58506 * 173.39691 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5315 2.0270 -1.3994 5 1 1.4312 2.6622 0.6660 6 1 3.5304 1.4501 0.7336 7 6 2.0102 -1.2021 -0.0059 8 1 3.0867 -1.2037 -0.0928 9 7 1.3299 -2.3860 0.0983 10 6 2.0671 -3.6476 0.2033 11 1 3.0388 -3.4641 0.6619 12 6 1.2737 -4.6327 1.0648 13 6 2.0582 -5.9396 1.2023 14 6 2.2557 -6.5601 -0.1843 15 7 2.8885 -5.5659 -1.0616 16 6 4.0195 -5.8625 -1.7320 17 8 4.5257 -6.9608 -1.6135 18 6 4.6456 -4.8494 -2.6134 19 6 5.9980 -4.9507 -2.9285 20 6 6.5735 -3.9970 -3.7550 21 6 5.7771 -2.9732 -4.2384 22 6 4.4310 -2.9314 -3.8839 23 7 3.6205 -1.9006 -4.3688 24 6 2.3152 -1.6933 -4.0543 25 6 1.9003 -0.5975 -4.7303 26 6 2.9805 -0.1181 -5.4802 27 7 4.0112 -0.8932 -5.2605 28 7 3.9104 -3.8569 -3.1000 29 6 2.2648 -4.2422 -1.1946 30 1 -0.4850 0.8401 0.0041 31 1 0.3599 -2.3892 0.1027 32 1 1.1104 -4.2015 2.0525 33 1 0.3119 -4.8346 0.5932 34 1 3.0301 -5.7349 1.6511 35 1 1.5033 -6.6321 1.8351 36 1 2.8974 -7.4375 -0.1040 37 1 1.2887 -6.8485 -0.5967 38 1 6.5918 -5.7621 -2.5341 39 1 7.6203 -4.0515 -4.0150 40 1 6.1951 -2.2154 -4.8845 41 1 1.7171 -2.2946 -3.3857 42 1 0.9101 -0.1676 -4.6966 43 1 2.9666 0.7467 -6.1269 44 1 1.2987 -4.3416 -1.6894 45 1 2.9124 -3.5903 -1.7808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000157975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:27 Heat of formation + Delta-G solvation = 107.311257 kcal Electronic energy + Delta-G solvation = -30608.696979 eV Core-core repulsion = 26628.730751 eV Total energy + Delta-G solvation = -3979.966228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.67134 -41.75457 -40.35090 -38.75370 -36.07296 -34.72279 -34.50391 -33.53730 -32.68443 -31.36221 -30.58617 -29.89852 -27.12165 -25.90002 -25.21633 -25.13251 -23.38677 -22.34233 -22.00760 -21.58114 -20.53458 -19.26384 -19.00878 -18.58403 -17.38530 -17.14184 -16.95234 -16.85705 -16.54356 -16.15846 -15.70985 -15.59024 -15.41137 -15.29065 -14.90973 -14.66791 -14.56652 -14.41260 -14.04902 -13.88326 -13.69359 -13.50060 -13.31788 -13.03671 -12.93766 -12.53896 -12.27615 -12.04360 -11.98194 -11.94928 -11.68437 -11.62435 -11.53185 -11.46825 -11.12148 -11.06564 -10.20942 -10.18467 -9.81830 -9.34876 -8.94929 -7.94653 -5.21661 -0.60644 -0.26317 0.96365 1.02271 1.42504 1.44054 1.49856 1.58870 1.81949 1.85704 2.52910 2.60470 2.87588 3.34487 3.39006 3.48863 3.84231 3.84505 3.86563 4.00928 4.01957 4.06585 4.14979 4.21270 4.30305 4.39123 4.40175 4.50572 4.63024 4.70838 4.75933 4.87317 4.90459 4.93991 4.98987 5.04733 5.06746 5.13533 5.26727 5.39803 5.43124 5.49384 5.57955 5.60029 5.99365 6.13681 6.23771 6.31035 6.67311 6.94486 7.35505 8.06239 8.33756 9.27669 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007636 B = 0.006321 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3666.071724 B = 4428.402980 C = 7115.885702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.050 4.050 3 Si 0.947 3.053 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.231 4.231 8 H 0.055 0.945 9 N -0.722 5.722 10 C 0.165 3.835 11 H 0.031 0.969 12 C -0.122 4.122 13 C -0.117 4.117 14 C 0.106 3.894 15 N -0.583 5.583 16 C 0.568 3.432 17 O -0.560 6.560 18 C 0.089 3.911 19 C -0.123 4.123 20 C -0.036 4.036 21 C -0.145 4.145 22 C 0.345 3.655 23 N -0.339 5.339 24 C 0.075 3.925 25 C -0.266 4.266 26 C 0.074 3.926 27 N -0.307 5.307 28 N -0.486 5.486 29 C 0.073 3.927 30 H 0.252 0.748 31 H 0.377 0.623 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.171 0.829 39 H 0.200 0.800 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.232 0.768 44 H 0.054 0.946 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.186 -9.032 -8.215 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.244 4.244 3 Si 0.778 3.222 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.363 4.363 8 H 0.073 0.927 9 N -0.362 5.362 10 C 0.055 3.945 11 H 0.049 0.951 12 C -0.160 4.160 13 C -0.156 4.156 14 C -0.016 4.016 15 N -0.314 5.314 16 C 0.355 3.645 17 O -0.440 6.440 18 C -0.049 4.049 19 C -0.145 4.145 20 C -0.061 4.061 21 C -0.167 4.167 22 C 0.116 3.884 23 N -0.117 5.117 24 C -0.066 4.066 25 C -0.294 4.294 26 C -0.115 4.115 27 N -0.125 5.125 28 N -0.203 5.203 29 C -0.052 4.052 30 H 0.061 0.939 31 H 0.210 0.790 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.188 0.812 39 H 0.217 0.783 40 H 0.182 0.818 41 H 0.186 0.814 42 H 0.183 0.817 43 H 0.248 0.752 44 H 0.073 0.927 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.922 -9.745 -8.121 16.104 hybrid contribution -0.663 1.477 0.263 1.640 sum 9.259 -8.268 -7.858 14.691 Atomic orbital electron populations 1.69764 1.05943 1.25864 1.58852 1.25186 0.96007 0.99687 1.03499 0.85551 0.77763 0.81415 0.77520 1.21348 1.21779 1.20837 1.19215 0.90686 0.85240 1.41163 0.92652 1.42372 1.05346 1.00771 1.87689 1.20661 0.94520 0.85999 0.93316 0.95083 1.21814 0.99064 0.95235 0.99904 1.21818 1.00816 0.96650 0.96278 1.21869 0.98615 0.91290 0.89788 1.48178 1.23966 1.15484 1.43728 1.18036 0.80468 0.86059 0.79918 1.90726 1.63871 1.22848 1.66517 1.20954 0.93023 0.92686 0.98246 1.22345 0.93456 1.00891 0.97801 1.22011 1.02326 0.89866 0.91896 1.22085 0.90952 1.01639 1.02057 1.18155 0.88964 0.87649 0.93615 1.45867 1.08244 1.21479 1.36144 1.23003 0.85334 0.99312 0.98969 1.21928 1.02919 0.99670 1.04868 1.24758 0.89304 0.99103 0.98296 1.77271 1.24218 1.00489 1.10553 1.66852 1.39618 1.03172 1.10612 1.23503 0.98985 0.82561 1.00170 0.93905 0.79024 0.92266 0.91592 0.92257 0.87681 0.88716 0.89972 0.81193 0.78269 0.81793 0.81412 0.81654 0.75158 0.92738 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.34 13.07 21.65 0.28 -55.05 16 2 C -0.05 -2.76 5.50 84.86 0.47 -2.30 16 3 Si 0.95 45.55 29.56 68.60 2.03 47.58 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 7 C -0.23 -12.41 9.91 84.03 0.83 -11.58 16 8 H 0.06 3.03 7.83 -2.91 -0.02 3.01 16 9 N -0.72 -34.57 5.07 -322.59 -1.63 -36.20 16 10 C 0.16 6.44 2.96 45.07 0.13 6.57 16 11 H 0.03 1.33 8.02 -2.39 -0.02 1.31 16 12 C -0.12 -3.82 5.40 30.62 0.17 -3.66 16 13 C -0.12 -2.89 6.08 30.67 0.19 -2.71 16 14 C 0.11 2.75 6.43 86.36 0.56 3.30 16 15 N -0.58 -18.57 2.97 -821.94 -2.44 -21.02 16 16 C 0.57 18.60 7.61 86.88 0.66 19.26 16 17 O -0.56 -19.32 15.95 -3.77 -0.06 -19.38 16 18 C 0.09 2.71 6.43 41.88 0.27 2.98 16 19 C -0.12 -2.80 9.62 22.62 0.22 -2.58 16 20 C -0.04 -0.63 10.16 22.42 0.23 -0.41 16 21 C -0.15 -3.48 9.70 22.56 0.22 -3.26 16 22 C 0.34 11.02 7.55 132.94 1.00 12.03 16 23 N -0.34 -11.60 3.81 -192.18 -0.73 -12.33 16 24 C 0.07 2.69 11.10 83.39 0.93 3.61 16 25 C -0.27 -8.36 10.80 22.00 0.24 -8.12 16 26 C 0.07 1.99 12.02 85.26 1.02 3.01 16 27 N -0.31 -9.50 11.84 -56.98 -0.67 -10.17 16 28 N -0.49 -16.22 5.90 -181.91 -1.07 -17.30 16 29 C 0.07 2.62 5.59 86.36 0.48 3.11 16 30 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.38 19.20 7.89 -92.71 -0.73 18.47 16 32 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 2.40 7.00 -2.38 -0.02 2.39 16 37 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.17 3.20 7.80 -2.91 -0.02 3.17 16 39 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.16 3.47 7.69 -2.91 -0.02 3.44 16 41 H 0.17 6.52 7.99 -2.91 -0.02 6.50 16 42 H 0.17 4.72 8.06 -2.91 -0.02 4.70 16 43 H 0.23 3.92 8.06 -2.91 -0.02 3.90 16 44 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.12 4.87 3.96 -50.81 -0.20 4.66 16 Total: -1.00 -68.95 375.85 3.41 -65.55 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: 0.10 Total: 39.07 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 7.61 Total: 19.26 kcal Atomic # 7 Polarization: -145.80 SS G_CDS: -6.27 Total: -152.07 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.06 Total: -19.38 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -68.95 3.41 -65.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000157975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.858 kcal (2) G-P(sol) polarization free energy of solvation -68.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds