Wall clock time and date at job start Sat Apr 11 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00196 * 2 1 4 4 H 1.48490 * 109.47284 * 270.00156 * 3 2 1 5 5 H 1.48504 * 109.46714 * 30.00139 * 3 2 1 6 6 H 1.48497 * 109.47238 * 149.99663 * 3 2 1 7 7 C 1.38815 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99793 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00545 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00461 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49738 * 325.00058 * 10 9 7 12 12 C 1.53043 * 109.52274 * 204.91851 * 10 9 7 13 13 C 1.53039 * 109.53363 * 178.66705 * 12 10 9 14 14 C 1.53194 * 109.31382 * 61.36630 * 13 12 10 15 15 N 1.46923 * 108.77591 * 305.36138 * 14 13 12 16 16 C 1.34772 * 120.63611 * 233.58497 * 15 14 13 17 17 O 1.21599 * 120.00564 * 173.86009 * 16 15 14 18 18 C 1.47429 * 119.99498 * 353.86535 * 16 15 14 19 19 C 1.41369 * 126.40656 * 331.48986 * 18 16 15 20 20 N 1.30442 * 108.07771 * 179.82261 * 19 18 16 21 21 N 1.39932 * 108.91886 * 0.44491 * 20 19 18 22 22 C 1.39811 * 125.77926 * 179.70907 * 21 20 19 23 23 C 1.38946 * 119.68842 * 359.73165 * 22 21 20 24 24 C 1.38416 * 119.10752 * 179.76766 * 23 22 21 25 25 C 1.38802 * 118.48245 * 0.49820 * 24 23 22 26 26 C 1.38129 * 119.29253 * 359.74466 * 25 24 23 27 27 N 1.31893 * 120.83989 * 0.02562 * 26 25 24 28 28 C 1.34624 * 108.44413 * 359.72023 * 21 20 19 29 29 C 1.46929 * 118.73592 * 53.61179 * 15 14 13 30 30 H 0.96998 * 120.00281 * 0.02562 * 1 2 3 31 31 H 0.97009 * 119.99692 * 359.97438 * 9 7 2 32 32 H 1.08991 * 109.45835 * 298.68626 * 12 10 9 33 33 H 1.08999 * 109.45795 * 58.65096 * 12 10 9 34 34 H 1.09002 * 109.50043 * 301.41641 * 13 12 10 35 35 H 1.08999 * 109.52342 * 181.33467 * 13 12 10 36 36 H 1.09007 * 109.58578 * 185.57665 * 14 13 12 37 37 H 1.09000 * 109.70598 * 65.22416 * 14 13 12 38 38 H 1.07996 * 125.96098 * 0.02562 * 19 18 16 39 39 H 1.07998 * 120.44688 * 359.97438 * 23 22 21 40 40 H 1.07999 * 120.76082 * 180.22265 * 24 23 22 41 41 H 1.07999 * 120.35597 * 179.72390 * 25 24 23 42 42 H 1.07994 * 119.58245 * 179.97438 * 26 25 24 43 43 H 1.08001 * 126.31727 * 179.97438 * 28 21 20 44 44 H 1.09001 * 109.58360 * 186.60420 * 29 15 14 45 45 H 1.08997 * 109.71106 * 66.24499 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0027 11 1 2.9688 -3.5506 -0.5920 12 6 1.1807 -4.7533 -0.6115 13 6 1.9576 -6.0714 -0.6432 14 6 2.3197 -6.4808 0.7879 15 7 3.0391 -5.3718 1.4293 16 6 4.2426 -5.5735 2.0014 17 8 4.8781 -4.6295 2.4297 18 6 4.7886 -6.9388 2.1078 19 6 4.0424 -8.1357 2.2038 20 7 4.8820 -9.1314 2.2765 21 7 6.1871 -8.6278 2.2416 22 6 7.3587 -9.3883 2.3036 23 6 7.2766 -10.7708 2.4153 24 6 8.4440 -11.5123 2.4708 25 6 9.6578 -10.8406 2.4228 26 6 9.6643 -9.4635 2.3166 27 7 8.5351 -8.7842 2.2611 28 6 6.1237 -7.2870 2.1386 29 6 2.4211 -4.0388 1.4357 30 1 -0.4850 0.8400 -0.0004 31 1 0.3554 -2.3881 -0.0016 32 1 0.2817 -4.8761 -0.0076 33 1 0.9006 -4.4723 -1.6267 34 1 2.8694 -5.9424 -1.2264 35 1 1.3412 -6.8467 -1.0985 36 1 2.9569 -7.3650 0.7649 37 1 1.4110 -6.6998 1.3486 38 1 2.9652 -8.2126 2.2118 39 1 6.3148 -11.2605 2.4550 40 1 8.4113 -12.5886 2.5541 41 1 10.5871 -11.3889 2.4684 42 1 10.6060 -8.9361 2.2793 43 1 6.9628 -6.6088 2.0893 44 1 3.1253 -3.3117 1.8402 45 1 1.5197 -4.0544 2.0483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000355198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:46 Heat of formation + Delta-G solvation = 115.766350 kcal Electronic energy + Delta-G solvation = -28571.853741 eV Core-core repulsion = 24592.254153 eV Total energy + Delta-G solvation = -3979.599588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11189 -40.49595 -39.42508 -37.13811 -34.64943 -34.03395 -33.05361 -32.22423 -31.18470 -30.81320 -30.06143 -28.16761 -25.66010 -24.64906 -24.28272 -23.80141 -22.13444 -21.87393 -21.38852 -20.10548 -19.31561 -18.35907 -17.06124 -16.99205 -16.81041 -16.18341 -15.93972 -15.80458 -15.25788 -15.03630 -14.73755 -14.41700 -14.12669 -13.92856 -13.76526 -13.75401 -13.46587 -13.32283 -12.96517 -12.68622 -12.60992 -12.32206 -12.22490 -11.48563 -11.29824 -11.10065 -10.85887 -10.80821 -10.58651 -10.51866 -10.40197 -10.21590 -10.16257 -9.78101 -9.75600 -9.56357 -9.49195 -9.03148 -8.70126 -8.25784 -6.95825 -5.75069 -3.04508 0.14924 0.63102 1.58149 1.63719 1.92386 3.15306 3.25704 3.46168 3.48016 3.53262 3.56165 3.78818 4.01401 4.32681 4.40798 4.49670 4.57634 4.62153 4.72038 4.86306 4.95238 5.08482 5.13909 5.17964 5.27784 5.35835 5.44002 5.52801 5.57271 5.58322 5.67764 5.84163 5.90350 5.94726 6.03285 6.08855 6.21853 6.26505 6.40053 6.54825 6.58562 6.80399 6.88567 6.90735 7.07024 7.40533 7.73036 7.76239 8.42645 8.47800 9.55096 10.09361 10.44688 11.47223 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.002208 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.774305 B =12675.548876 C =13630.306540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.168 3.832 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.129 4.129 14 C 0.095 3.905 15 N -0.600 5.600 16 C 0.589 3.411 17 O -0.541 6.541 18 C -0.273 4.273 19 C 0.095 3.905 20 N -0.288 5.288 21 N -0.319 5.319 22 C 0.368 3.632 23 C -0.161 4.161 24 C -0.052 4.052 25 C -0.186 4.186 26 C 0.135 3.865 27 N -0.505 5.505 28 C 0.148 3.852 29 C 0.094 3.906 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.206 0.794 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.169 0.831 43 H 0.195 0.805 44 H 0.091 0.909 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.210 -28.268 3.665 31.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.164 4.164 13 C -0.168 4.168 14 C -0.028 4.028 15 N -0.333 5.333 16 C 0.376 3.624 17 O -0.419 6.419 18 C -0.287 4.287 19 C -0.094 4.094 20 N -0.106 5.106 21 N -0.093 5.093 22 C 0.141 3.859 23 C -0.183 4.183 24 C -0.079 4.079 25 C -0.206 4.206 26 C -0.023 4.023 27 N -0.218 5.218 28 C 0.002 3.998 29 C -0.030 4.030 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.223 0.777 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.186 0.814 43 H 0.212 0.788 44 H 0.110 0.890 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.861 -27.967 3.914 31.911 hybrid contribution -0.075 0.943 0.019 0.947 sum 14.786 -27.023 3.933 31.054 Atomic orbital electron populations 1.69657 1.05099 1.25701 1.57637 1.24743 0.95522 0.97735 1.02788 0.86189 0.78840 0.83732 0.77500 1.21732 1.21777 1.20580 1.19282 0.91130 0.83974 1.42766 0.91013 1.42376 1.05788 0.99598 1.88129 1.20496 0.94910 0.86398 0.92507 0.93109 1.21824 0.98676 0.94141 1.01788 1.21876 1.00880 0.98178 0.95870 1.22137 0.96853 0.89812 0.93995 1.48036 1.18614 1.11151 1.55479 1.17181 0.80872 0.86434 0.77913 1.90800 1.58661 1.43006 1.49396 1.20508 0.92589 0.95174 1.20428 1.24560 1.00348 0.89019 0.95496 1.77240 0.85032 1.22625 1.25689 1.45389 1.04173 1.04662 1.55105 1.17726 0.83575 0.87676 0.96882 1.21655 1.01258 0.92039 1.03373 1.21566 0.91339 1.00969 0.93985 1.22216 0.99462 0.95885 1.03069 1.22587 0.94779 0.91522 0.93385 1.66889 0.97246 1.41642 1.15993 1.23159 0.98692 0.84558 0.93394 1.22782 0.97754 0.81402 1.01056 0.93520 0.78090 0.92002 0.91471 0.91636 0.91028 0.89502 0.91252 0.77745 0.83177 0.83691 0.83868 0.81400 0.78831 0.89026 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.72 -17.94 5.12 -53.31 -0.27 -18.21 16 10 C 0.17 3.36 2.92 -67.81 -0.20 3.16 16 11 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 12 C -0.13 -1.97 5.36 -26.69 -0.14 -2.12 16 13 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 14 C 0.10 1.09 5.20 -3.71 -0.02 1.07 16 15 N -0.60 -9.36 2.97 -174.03 -0.52 -9.88 16 16 C 0.59 9.88 7.63 -12.52 -0.10 9.79 16 17 O -0.54 -11.31 16.43 5.28 0.09 -11.23 16 18 C -0.27 -3.68 5.57 -105.05 -0.58 -4.27 16 19 C 0.09 1.03 9.59 -16.95 -0.16 0.86 16 20 N -0.29 -3.31 11.74 30.88 0.36 -2.95 16 21 N -0.32 -3.83 3.76 -11.74 -0.04 -3.88 16 22 C 0.37 3.90 7.54 -154.37 -1.16 2.74 16 23 C -0.16 -1.29 9.69 -39.25 -0.38 -1.67 16 24 C -0.05 -0.27 10.17 -39.31 -0.40 -0.67 16 25 C -0.19 -0.87 10.11 -39.41 -0.40 -1.27 16 26 C 0.14 0.88 11.18 -17.57 -0.20 0.69 16 27 N -0.50 -5.08 9.82 -12.29 -0.12 -5.21 16 28 C 0.15 1.92 10.97 -16.41 -0.18 1.74 16 29 C 0.09 1.80 6.03 -3.71 -0.02 1.77 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.39 10.07 7.80 -40.82 -0.32 9.76 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.83 4.12 -51.92 -0.21 0.62 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.21 1.57 6.38 -52.49 -0.33 1.23 16 39 H 0.15 1.12 7.67 -52.49 -0.40 0.72 16 40 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 41 H 0.14 0.24 8.06 -52.49 -0.42 -0.18 16 42 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.19 2.41 8.03 -52.49 -0.42 1.99 16 44 H 0.09 2.06 7.00 -51.93 -0.36 1.69 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -35.44 375.46 -9.32 -44.76 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.83 Total: 7.77 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -4.35 Total: 2.74 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: 0.13 Total: -67.59 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.44 -9.32 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000355198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.531 kcal (2) G-P(sol) polarization free energy of solvation -35.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds