Wall clock time and date at job start Sat Apr 11 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00196 * 2 1 4 4 H 1.48490 * 109.47284 * 270.00156 * 3 2 1 5 5 H 1.48504 * 109.46714 * 30.00139 * 3 2 1 6 6 H 1.48497 * 109.47238 * 149.99663 * 3 2 1 7 7 C 1.38815 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99793 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00545 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00461 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49738 * 325.00058 * 10 9 7 12 12 C 1.53043 * 109.52274 * 204.91851 * 10 9 7 13 13 C 1.53039 * 109.53363 * 178.66705 * 12 10 9 14 14 C 1.53194 * 109.31382 * 61.36630 * 13 12 10 15 15 N 1.46923 * 108.77591 * 305.36138 * 14 13 12 16 16 C 1.34772 * 120.63611 * 233.58497 * 15 14 13 17 17 O 1.21599 * 120.00564 * 173.86009 * 16 15 14 18 18 C 1.47429 * 119.99498 * 353.86535 * 16 15 14 19 19 C 1.41369 * 126.40656 * 331.48986 * 18 16 15 20 20 N 1.30442 * 108.07771 * 179.82261 * 19 18 16 21 21 N 1.39932 * 108.91886 * 0.44491 * 20 19 18 22 22 C 1.39811 * 125.77926 * 179.70907 * 21 20 19 23 23 C 1.38946 * 119.68842 * 359.73165 * 22 21 20 24 24 C 1.38416 * 119.10752 * 179.76766 * 23 22 21 25 25 C 1.38802 * 118.48245 * 0.49820 * 24 23 22 26 26 C 1.38129 * 119.29253 * 359.74466 * 25 24 23 27 27 N 1.31893 * 120.83989 * 0.02562 * 26 25 24 28 28 C 1.34624 * 108.44413 * 359.72023 * 21 20 19 29 29 C 1.46929 * 118.73592 * 53.61179 * 15 14 13 30 30 H 0.96998 * 120.00281 * 0.02562 * 1 2 3 31 31 H 0.97009 * 119.99692 * 359.97438 * 9 7 2 32 32 H 1.08991 * 109.45835 * 298.68626 * 12 10 9 33 33 H 1.08999 * 109.45795 * 58.65096 * 12 10 9 34 34 H 1.09002 * 109.50043 * 301.41641 * 13 12 10 35 35 H 1.08999 * 109.52342 * 181.33467 * 13 12 10 36 36 H 1.09007 * 109.58578 * 185.57665 * 14 13 12 37 37 H 1.09000 * 109.70598 * 65.22416 * 14 13 12 38 38 H 1.07996 * 125.96098 * 0.02562 * 19 18 16 39 39 H 1.07998 * 120.44688 * 359.97438 * 23 22 21 40 40 H 1.07999 * 120.76082 * 180.22265 * 24 23 22 41 41 H 1.07999 * 120.35597 * 179.72390 * 25 24 23 42 42 H 1.07994 * 119.58245 * 179.97438 * 26 25 24 43 43 H 1.08001 * 126.31727 * 179.97438 * 28 21 20 44 44 H 1.09001 * 109.58360 * 186.60420 * 29 15 14 45 45 H 1.08997 * 109.71106 * 66.24499 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0027 11 1 2.9688 -3.5506 -0.5920 12 6 1.1807 -4.7533 -0.6115 13 6 1.9576 -6.0714 -0.6432 14 6 2.3197 -6.4808 0.7879 15 7 3.0391 -5.3718 1.4293 16 6 4.2426 -5.5735 2.0014 17 8 4.8781 -4.6295 2.4297 18 6 4.7886 -6.9388 2.1078 19 6 4.0424 -8.1357 2.2038 20 7 4.8820 -9.1314 2.2765 21 7 6.1871 -8.6278 2.2416 22 6 7.3587 -9.3883 2.3036 23 6 7.2766 -10.7708 2.4153 24 6 8.4440 -11.5123 2.4708 25 6 9.6578 -10.8406 2.4228 26 6 9.6643 -9.4635 2.3166 27 7 8.5351 -8.7842 2.2611 28 6 6.1237 -7.2870 2.1386 29 6 2.4211 -4.0388 1.4357 30 1 -0.4850 0.8400 -0.0004 31 1 0.3554 -2.3881 -0.0016 32 1 0.2817 -4.8761 -0.0076 33 1 0.9006 -4.4723 -1.6267 34 1 2.8694 -5.9424 -1.2264 35 1 1.3412 -6.8467 -1.0985 36 1 2.9569 -7.3650 0.7649 37 1 1.4110 -6.6998 1.3486 38 1 2.9652 -8.2126 2.2118 39 1 6.3148 -11.2605 2.4550 40 1 8.4113 -12.5886 2.5541 41 1 10.5871 -11.3889 2.4684 42 1 10.6060 -8.9361 2.2793 43 1 6.9628 -6.6088 2.0893 44 1 3.1253 -3.3117 1.8402 45 1 1.5197 -4.0544 2.0483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000355198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:45 Heat of formation + Delta-G solvation = 92.259959 kcal Electronic energy + Delta-G solvation = -28572.873054 eV Core-core repulsion = 24592.254153 eV Total energy + Delta-G solvation = -3980.618901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.98572 -41.24482 -40.57464 -38.58662 -36.26725 -34.94362 -33.87040 -33.56137 -32.72795 -31.73527 -31.00118 -29.72818 -26.87492 -25.98283 -25.19307 -24.88857 -23.33339 -23.01681 -22.22804 -21.45124 -20.42065 -19.39617 -19.08613 -17.79404 -17.50422 -17.15146 -16.99734 -16.68787 -16.56976 -16.19829 -16.01527 -15.50705 -15.43338 -15.18216 -15.15946 -14.77425 -14.64514 -14.22289 -13.99691 -13.96915 -13.85552 -13.59801 -13.08119 -13.02578 -12.89065 -12.50960 -12.39577 -12.21983 -12.04987 -11.86333 -11.74663 -11.43947 -11.31966 -11.11417 -11.01702 -10.91722 -10.76214 -10.40769 -9.74370 -9.42397 -8.99255 -7.97886 -5.26574 -0.52267 0.15502 0.70171 0.85774 1.02927 1.44397 1.45674 1.54865 1.92391 2.23080 2.54142 2.71942 3.08936 3.33112 3.35038 3.60385 3.75413 3.77925 3.90727 3.99381 4.02839 4.04946 4.11757 4.20859 4.23448 4.32826 4.36561 4.41695 4.50223 4.64218 4.70256 4.77937 4.90636 4.94068 4.95365 5.06375 5.12352 5.16677 5.22013 5.41191 5.41666 5.45753 5.49724 5.61184 5.81437 6.12308 6.25161 6.46793 6.77989 7.16202 7.31815 8.04270 8.30152 9.24606 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.002208 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.774305 B =12675.548876 C =13630.306540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.063 0.937 9 N -0.728 5.728 10 C 0.166 3.834 11 H 0.027 0.973 12 C -0.117 4.117 13 C -0.121 4.121 14 C 0.090 3.910 15 N -0.596 5.596 16 C 0.586 3.414 17 O -0.596 6.596 18 C -0.288 4.288 19 C 0.106 3.894 20 N -0.289 5.289 21 N -0.316 5.316 22 C 0.325 3.675 23 C -0.165 4.165 24 C -0.048 4.048 25 C -0.166 4.166 26 C 0.120 3.880 27 N -0.536 5.536 28 C 0.141 3.859 29 C 0.109 3.891 30 H 0.253 0.747 31 H 0.378 0.622 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.240 0.760 39 H 0.152 0.848 40 H 0.181 0.819 41 H 0.182 0.818 42 H 0.192 0.808 43 H 0.188 0.812 44 H 0.047 0.953 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.064 -32.202 3.548 35.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.261 4.261 3 Si 0.796 3.204 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.081 0.919 9 N -0.369 5.369 10 C 0.056 3.944 11 H 0.045 0.955 12 C -0.155 4.155 13 C -0.160 4.160 14 C -0.031 4.031 15 N -0.328 5.328 16 C 0.376 3.624 17 O -0.478 6.478 18 C -0.302 4.302 19 C -0.083 4.083 20 N -0.107 5.107 21 N -0.090 5.090 22 C 0.100 3.900 23 C -0.187 4.187 24 C -0.074 4.074 25 C -0.186 4.186 26 C -0.038 4.038 27 N -0.250 5.250 28 C -0.006 4.006 29 C -0.016 4.016 30 H 0.062 0.938 31 H 0.211 0.789 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.256 0.744 39 H 0.170 0.830 40 H 0.198 0.802 41 H 0.199 0.801 42 H 0.209 0.791 43 H 0.205 0.795 44 H 0.066 0.934 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.737 -31.997 3.781 35.857 hybrid contribution -0.135 1.998 0.065 2.003 sum 15.602 -29.999 3.846 34.032 Atomic orbital electron populations 1.69781 1.06209 1.26121 1.59130 1.25468 0.96426 1.00721 1.03492 0.85237 0.77610 0.79968 0.77557 1.21074 1.21647 1.20379 1.19500 0.90982 0.85536 1.41558 0.91884 1.42492 1.05536 1.00529 1.88297 1.20660 0.94565 0.86151 0.92977 0.95479 1.21734 0.98564 0.94286 1.00955 1.21872 1.00588 0.97026 0.96479 1.22539 0.98173 0.88851 0.93559 1.48029 1.18544 1.10815 1.55382 1.17647 0.80592 0.87227 0.76960 1.90764 1.60199 1.45027 1.51820 1.20165 0.93186 0.94105 1.22739 1.24972 1.01619 0.87253 0.94445 1.77208 0.84928 1.22830 1.25721 1.45562 1.04979 1.04211 1.54245 1.18066 0.83356 0.88591 0.99972 1.21834 1.02598 0.91052 1.03211 1.22039 0.90401 1.02585 0.92368 1.22674 1.00896 0.95133 0.99906 1.23174 0.94574 0.92917 0.93097 1.66836 0.98076 1.43143 1.16941 1.23120 0.98577 0.85446 0.93504 1.22233 0.96773 0.82733 0.99864 0.93840 0.78888 0.90874 0.92174 0.92637 0.86840 0.86967 0.88119 0.74389 0.83010 0.80154 0.80062 0.79128 0.79548 0.93390 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.39 13.06 21.65 0.28 -59.11 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 3 Si 0.97 48.24 29.55 68.60 2.03 50.27 16 4 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.24 -14.22 9.93 84.04 0.83 -13.38 16 8 H 0.06 3.71 7.83 -2.91 -0.02 3.68 16 9 N -0.73 -37.62 5.12 -322.56 -1.65 -39.28 16 10 C 0.17 6.84 2.92 45.07 0.13 6.97 16 11 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 12 C -0.12 -3.54 5.36 30.62 0.16 -3.37 16 13 C -0.12 -2.59 6.08 30.67 0.19 -2.40 16 14 C 0.09 1.79 5.20 86.36 0.45 2.24 16 15 N -0.60 -18.57 2.97 -822.77 -2.45 -21.02 16 16 C 0.59 20.34 7.63 86.66 0.66 21.00 16 17 O -0.60 -26.72 16.43 -4.03 -0.07 -26.79 16 18 C -0.29 -7.76 5.57 -20.14 -0.11 -7.87 16 19 C 0.11 2.08 9.59 85.67 0.82 2.90 16 20 N -0.29 -6.21 11.74 -56.23 -0.66 -6.87 16 21 N -0.32 -7.55 3.76 -191.04 -0.72 -8.27 16 22 C 0.33 6.73 7.54 132.77 1.00 7.74 16 23 C -0.16 -2.35 9.69 22.48 0.22 -2.13 16 24 C -0.05 -0.34 10.17 22.45 0.23 -0.11 16 25 C -0.17 -0.96 10.11 22.38 0.23 -0.73 16 26 C 0.12 1.35 11.18 84.66 0.95 2.29 16 27 N -0.54 -10.68 9.82 -192.80 -1.89 -12.57 16 28 C 0.14 3.80 10.97 84.21 0.92 4.72 16 29 C 0.11 4.33 6.03 86.36 0.52 4.85 16 30 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.38 20.34 7.80 -92.70 -0.72 19.62 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.11 1.75 4.12 -2.38 -0.01 1.74 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.24 2.73 6.38 -2.91 -0.02 2.71 16 39 H 0.15 2.01 7.67 -2.91 -0.02 1.98 16 40 H 0.18 -0.05 8.06 -2.91 -0.02 -0.07 16 41 H 0.18 -0.34 8.06 -2.91 -0.02 -0.36 16 42 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 43 H 0.19 5.09 8.03 -2.91 -0.02 5.07 16 44 H 0.05 2.31 7.00 -2.39 -0.02 2.29 16 45 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -82.95 375.46 2.85 -80.10 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.31 Total: 24.40 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 7.67 Total: 19.13 kcal Atomic # 7 Polarization: -140.03 SS G_CDS: -7.09 Total: -147.11 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.07 Total: -26.79 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -82.95 2.85 -80.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000355198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.361 kcal (2) G-P(sol) polarization free energy of solvation -82.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds