Wall clock time and date at job start Sat Apr 11 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00012 * 2 1 4 4 H 1.48502 * 109.47275 * 269.99359 * 3 2 1 5 5 H 1.48502 * 109.47265 * 29.99812 * 3 2 1 6 6 H 1.48502 * 109.47041 * 149.99813 * 3 2 1 7 7 C 1.38815 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99821 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00363 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.49694 * 325.06916 * 10 9 7 12 12 C 1.53033 * 109.49906 * 205.00160 * 10 9 7 13 13 C 1.53036 * 109.53720 * 178.65259 * 12 10 9 14 14 C 1.53196 * 109.34314 * 61.34941 * 13 12 10 15 15 N 1.46934 * 108.76614 * 305.41342 * 14 13 12 16 16 C 1.34774 * 120.60627 * 233.57289 * 15 14 13 17 17 O 1.21513 * 120.00566 * 172.13236 * 16 15 14 18 18 C 1.48190 * 119.99850 * 352.13863 * 16 15 14 19 19 C 1.39117 * 119.69260 * 170.50940 * 18 16 15 20 20 C 1.39278 * 118.97451 * 180.02562 * 19 18 16 21 21 N 1.39968 * 120.82181 * 180.02562 * 20 19 18 22 22 C 1.37159 * 126.48447 * 179.71015 * 21 20 19 23 23 C 1.34627 * 106.82861 * 179.84239 * 22 21 20 24 24 N 1.34151 * 108.20994 * 0.41930 * 23 22 21 25 25 C 1.30487 * 109.36991 * 359.73635 * 24 23 22 26 26 C 1.39262 * 118.36017 * 359.97438 * 20 19 18 27 27 C 1.38340 * 119.27467 * 0.02562 * 26 20 19 28 28 N 1.31596 * 120.97753 * 359.72695 * 27 26 20 29 29 C 1.46919 * 118.76558 * 53.55723 * 15 14 13 30 30 H 0.97004 * 120.00203 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99747 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46392 * 58.63319 * 12 10 9 33 33 H 1.09007 * 109.46227 * 298.66924 * 12 10 9 34 34 H 1.09006 * 109.50058 * 181.31528 * 13 12 10 35 35 H 1.09007 * 109.49841 * 301.37815 * 13 12 10 36 36 H 1.08996 * 109.58313 * 65.16901 * 14 13 12 37 37 H 1.09003 * 109.58889 * 185.59585 * 14 13 12 38 38 H 1.08006 * 120.51821 * 0.02562 * 19 18 16 39 39 H 1.07991 * 126.58357 * 359.97438 * 22 21 20 40 40 H 1.07997 * 125.89121 * 180.19094 * 23 22 21 41 41 H 1.07994 * 125.72024 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.36399 * 180.02562 * 26 20 19 43 43 H 1.08008 * 119.51176 * 180.02562 * 27 26 20 44 44 H 1.09003 * 109.59081 * 186.62079 * 29 15 14 45 45 H 1.09007 * 109.70495 * 66.26663 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9694 -3.5508 -0.5878 12 6 1.1811 -4.7529 -0.6092 13 6 1.9576 -6.0713 -0.6404 14 6 2.3189 -6.4814 0.7908 15 7 3.0373 -5.3723 1.4332 16 6 4.2404 -5.5743 2.0060 17 8 4.8892 -4.6283 2.4067 18 6 4.7721 -6.9503 2.1471 19 6 6.0887 -7.1420 2.5538 20 6 6.5731 -8.4416 2.6808 21 7 7.8911 -8.6791 3.0877 22 6 8.4845 -9.9042 3.2561 23 6 9.7511 -9.6730 3.6495 24 7 9.9294 -8.3458 3.7301 25 6 8.8232 -7.7395 3.3964 26 6 5.7134 -9.4991 2.3941 27 6 4.4169 -9.2278 1.9951 28 7 3.9862 -7.9888 1.8887 29 6 2.4198 -4.0392 1.4392 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 0.9020 -4.4718 -1.6246 33 1 0.2814 -4.8756 -0.0061 34 1 1.3409 -6.8460 -1.0961 35 1 2.8697 -5.9426 -1.2233 36 1 1.4085 -6.6989 1.3493 37 1 2.9560 -7.3655 0.7678 38 1 6.7253 -6.2962 2.7677 39 1 8.0247 -10.8689 3.1006 40 1 10.4941 -10.4261 3.8665 41 1 8.6737 -6.6703 3.3695 42 1 6.0552 -10.5198 2.4823 43 1 3.7468 -10.0450 1.7722 44 1 3.1237 -3.3122 1.8445 45 1 1.5178 -4.0546 2.0511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000604924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:58 Heat of formation + Delta-G solvation = 108.046387 kcal Electronic energy + Delta-G solvation = -28830.078602 eV Core-core repulsion = 24850.144252 eV Total energy + Delta-G solvation = -3979.934350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.87900 -41.07471 -39.34105 -37.33434 -35.52330 -34.39305 -32.45063 -32.04612 -31.23242 -30.95075 -29.94557 -28.26152 -26.08273 -24.77136 -24.20500 -23.83917 -22.07249 -21.81606 -21.42251 -20.62252 -19.63112 -18.46471 -17.42949 -17.07857 -16.64010 -16.29878 -16.15288 -15.72459 -15.42551 -15.07825 -14.81138 -14.54575 -14.40158 -14.26318 -14.01482 -13.79219 -13.73029 -13.52592 -13.35571 -12.76661 -12.48083 -12.36049 -12.28791 -11.77459 -11.43591 -11.06747 -10.83792 -10.81086 -10.59034 -10.56625 -10.24336 -10.19723 -9.83972 -9.81746 -9.73500 -9.61733 -9.19944 -9.07431 -9.02259 -8.34885 -7.00073 -5.78601 -3.08336 -0.00670 0.28009 1.69233 1.97011 2.55524 2.66410 2.97330 3.41397 3.45128 3.50589 3.52973 3.71008 3.92157 3.99187 4.16172 4.30560 4.41781 4.58628 4.62879 4.85359 4.91060 5.01761 5.12782 5.16675 5.20256 5.25815 5.39837 5.49225 5.64964 5.68961 5.74505 5.83460 5.92867 6.09723 6.15682 6.18657 6.22100 6.28762 6.40329 6.50411 6.60910 6.75529 6.82874 7.00634 7.14745 7.46786 7.59065 7.71957 8.18179 8.39606 9.51381 10.05408 10.40838 11.43588 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016584 B = 0.002442 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.012004 B =11463.541987 C =12903.759605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.170 3.830 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.131 4.131 14 C 0.074 3.926 15 N -0.578 5.578 16 C 0.559 3.441 17 O -0.531 6.531 18 C 0.124 3.876 19 C -0.132 4.132 20 C 0.179 3.821 21 N -0.416 5.416 22 C -0.054 4.054 23 C -0.017 4.017 24 N -0.481 5.481 25 C 0.201 3.799 26 C -0.173 4.173 27 C 0.123 3.877 28 N -0.452 5.452 29 C 0.089 3.911 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.139 0.861 38 H 0.158 0.842 39 H 0.181 0.819 40 H 0.178 0.822 41 H 0.215 0.785 42 H 0.147 0.853 43 H 0.175 0.825 44 H 0.091 0.909 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.708 -27.171 4.200 29.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.166 4.166 13 C -0.170 4.170 14 C -0.049 4.049 15 N -0.308 5.308 16 C 0.344 3.656 17 O -0.408 6.408 18 C -0.014 4.014 19 C -0.155 4.155 20 C 0.077 3.923 21 N -0.097 5.097 22 C -0.183 4.183 23 C -0.162 4.162 24 N -0.197 5.197 25 C -0.080 4.080 26 C -0.195 4.195 27 C -0.035 4.035 28 N -0.165 5.165 29 C -0.035 4.035 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.156 0.844 38 H 0.176 0.824 39 H 0.198 0.802 40 H 0.195 0.805 41 H 0.231 0.769 42 H 0.165 0.835 43 H 0.192 0.808 44 H 0.109 0.891 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.984 -25.905 4.374 28.476 hybrid contribution 0.116 0.304 0.057 0.330 sum 11.101 -25.601 4.431 28.254 Atomic orbital electron populations 1.69663 1.05117 1.25760 1.57465 1.24752 0.95527 0.97766 1.02681 0.86188 0.78824 0.83684 0.77537 1.21684 1.21739 1.20571 1.19278 0.91115 0.83970 1.42981 0.91020 1.42386 1.05819 0.99582 1.88043 1.20472 0.94985 0.86496 0.92223 0.93131 1.21849 0.98733 0.94354 1.01645 1.21932 1.00475 0.97878 0.96717 1.22945 0.98558 0.91126 0.92241 1.48138 1.17675 1.11799 1.53230 1.17778 0.81959 0.86238 0.79660 1.90818 1.57783 1.41589 1.50561 1.21319 0.90210 0.93939 0.95894 1.21774 0.96995 0.95955 1.00761 1.17970 0.83166 0.94462 0.96679 1.43237 1.08695 1.08190 1.49553 1.22818 0.95800 0.89252 1.10436 1.22456 0.95428 0.93269 1.05092 1.70397 1.23787 1.06462 1.19091 1.25563 0.83660 0.97185 1.01630 1.22050 0.95063 0.99310 1.03114 1.22960 0.92968 0.94402 0.93174 1.67822 1.35612 0.99322 1.13737 1.22911 0.97861 0.81264 1.01492 0.93470 0.78050 0.91593 0.92077 0.91139 0.92094 0.91784 0.84432 0.82446 0.80181 0.80526 0.76910 0.83511 0.80755 0.89070 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 8 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 9 N -0.72 -17.86 5.13 -53.31 -0.27 -18.14 16 10 C 0.17 3.39 2.92 -67.81 -0.20 3.19 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -2.04 5.35 -26.70 -0.14 -2.18 16 13 C -0.13 -1.64 6.08 -26.61 -0.16 -1.81 16 14 C 0.07 0.91 5.88 -3.70 -0.02 0.89 16 15 N -0.58 -9.05 2.97 -173.74 -0.52 -9.57 16 16 C 0.56 8.83 7.65 -12.17 -0.09 8.73 16 17 O -0.53 -10.11 15.79 5.35 0.08 -10.03 16 18 C 0.12 1.47 6.57 -83.04 -0.55 0.92 16 19 C -0.13 -1.34 9.06 -38.87 -0.35 -1.69 16 20 C 0.18 1.45 6.67 -83.38 -0.56 0.90 16 21 N -0.42 -3.45 2.99 -61.91 -0.18 -3.63 16 22 C -0.05 -0.37 10.89 -16.45 -0.18 -0.54 16 23 C -0.02 -0.14 11.85 -17.82 -0.21 -0.35 16 24 N -0.48 -5.15 11.24 -14.47 -0.16 -5.31 16 25 C 0.20 1.87 11.95 -89.60 -1.07 0.80 16 26 C -0.17 -0.99 9.55 -39.16 -0.37 -1.36 16 27 C 0.12 0.74 11.17 -17.61 -0.20 0.54 16 28 N -0.45 -4.29 6.13 -9.86 -0.06 -4.35 16 29 C 0.09 1.69 6.03 -3.71 -0.02 1.66 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.39 10.08 7.80 -40.82 -0.32 9.76 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.14 1.48 4.04 -83.58 -0.34 1.15 16 38 H 0.16 1.57 6.52 -52.48 -0.34 1.23 16 39 H 0.18 0.56 7.22 -52.49 -0.38 0.18 16 40 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.21 1.51 7.15 -52.49 -0.38 1.13 16 42 H 0.15 0.40 6.94 -52.49 -0.36 0.03 16 43 H 0.18 0.42 8.06 -52.48 -0.42 -0.01 16 44 H 0.09 1.99 7.00 -51.93 -0.36 1.63 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -34.90 371.09 -10.02 -44.92 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.83 Total: 7.78 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -4.37 Total: 2.36 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -0.47 Total: -68.30 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.90 -10.02 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000604924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.968 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds