Wall clock time and date at job start Sat Apr 11 2020 06:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00012 * 2 1 4 4 H 1.48502 * 109.47275 * 269.99359 * 3 2 1 5 5 H 1.48502 * 109.47265 * 29.99812 * 3 2 1 6 6 H 1.48502 * 109.47041 * 149.99813 * 3 2 1 7 7 C 1.38815 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99821 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00363 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.49694 * 325.06916 * 10 9 7 12 12 C 1.53033 * 109.49906 * 205.00160 * 10 9 7 13 13 C 1.53036 * 109.53720 * 178.65259 * 12 10 9 14 14 C 1.53196 * 109.34314 * 61.34941 * 13 12 10 15 15 N 1.46934 * 108.76614 * 305.41342 * 14 13 12 16 16 C 1.34774 * 120.60627 * 233.57289 * 15 14 13 17 17 O 1.21513 * 120.00566 * 172.13236 * 16 15 14 18 18 C 1.48190 * 119.99850 * 352.13863 * 16 15 14 19 19 C 1.39117 * 119.69260 * 170.50940 * 18 16 15 20 20 C 1.39278 * 118.97451 * 180.02562 * 19 18 16 21 21 N 1.39968 * 120.82181 * 180.02562 * 20 19 18 22 22 C 1.37159 * 126.48447 * 179.71015 * 21 20 19 23 23 C 1.34627 * 106.82861 * 179.84239 * 22 21 20 24 24 N 1.34151 * 108.20994 * 0.41930 * 23 22 21 25 25 C 1.30487 * 109.36991 * 359.73635 * 24 23 22 26 26 C 1.39262 * 118.36017 * 359.97438 * 20 19 18 27 27 C 1.38340 * 119.27467 * 0.02562 * 26 20 19 28 28 N 1.31596 * 120.97753 * 359.72695 * 27 26 20 29 29 C 1.46919 * 118.76558 * 53.55723 * 15 14 13 30 30 H 0.97004 * 120.00203 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99747 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46392 * 58.63319 * 12 10 9 33 33 H 1.09007 * 109.46227 * 298.66924 * 12 10 9 34 34 H 1.09006 * 109.50058 * 181.31528 * 13 12 10 35 35 H 1.09007 * 109.49841 * 301.37815 * 13 12 10 36 36 H 1.08996 * 109.58313 * 65.16901 * 14 13 12 37 37 H 1.09003 * 109.58889 * 185.59585 * 14 13 12 38 38 H 1.08006 * 120.51821 * 0.02562 * 19 18 16 39 39 H 1.07991 * 126.58357 * 359.97438 * 22 21 20 40 40 H 1.07997 * 125.89121 * 180.19094 * 23 22 21 41 41 H 1.07994 * 125.72024 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.36399 * 180.02562 * 26 20 19 43 43 H 1.08008 * 119.51176 * 180.02562 * 27 26 20 44 44 H 1.09003 * 109.59081 * 186.62079 * 29 15 14 45 45 H 1.09007 * 109.70495 * 66.26663 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9694 -3.5508 -0.5878 12 6 1.1811 -4.7529 -0.6092 13 6 1.9576 -6.0713 -0.6404 14 6 2.3189 -6.4814 0.7908 15 7 3.0373 -5.3723 1.4332 16 6 4.2404 -5.5743 2.0060 17 8 4.8892 -4.6283 2.4067 18 6 4.7721 -6.9503 2.1471 19 6 6.0887 -7.1420 2.5538 20 6 6.5731 -8.4416 2.6808 21 7 7.8911 -8.6791 3.0877 22 6 8.4845 -9.9042 3.2561 23 6 9.7511 -9.6730 3.6495 24 7 9.9294 -8.3458 3.7301 25 6 8.8232 -7.7395 3.3964 26 6 5.7134 -9.4991 2.3941 27 6 4.4169 -9.2278 1.9951 28 7 3.9862 -7.9888 1.8887 29 6 2.4198 -4.0392 1.4392 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 0.9020 -4.4718 -1.6246 33 1 0.2814 -4.8756 -0.0061 34 1 1.3409 -6.8460 -1.0961 35 1 2.8697 -5.9426 -1.2233 36 1 1.4085 -6.6989 1.3493 37 1 2.9560 -7.3655 0.7678 38 1 6.7253 -6.2962 2.7677 39 1 8.0247 -10.8689 3.1006 40 1 10.4941 -10.4261 3.8665 41 1 8.6737 -6.6703 3.3695 42 1 6.0552 -10.5198 2.4823 43 1 3.7468 -10.0450 1.7722 44 1 3.1237 -3.3122 1.8445 45 1 1.5178 -4.0546 2.0511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000604924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:57 Heat of formation + Delta-G solvation = 86.022904 kcal Electronic energy + Delta-G solvation = -28831.033612 eV Core-core repulsion = 24850.144252 eV Total energy + Delta-G solvation = -3980.889360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.47641 -41.95080 -40.39754 -38.71963 -36.45471 -35.87935 -33.95923 -32.83767 -32.72045 -31.76966 -30.52705 -29.93785 -27.20488 -25.91030 -25.36653 -25.01838 -23.24492 -22.84382 -22.07080 -21.65305 -20.77223 -19.44179 -19.10441 -18.31026 -17.30012 -17.22213 -16.97593 -16.85083 -16.55175 -16.32371 -15.88351 -15.50275 -15.47402 -15.29661 -15.15516 -14.91326 -14.88384 -14.65215 -14.37488 -14.01628 -13.94936 -13.63990 -13.18996 -13.03581 -12.90298 -12.52724 -12.46910 -12.22949 -12.10274 -11.88898 -11.78483 -11.49284 -11.35960 -11.22688 -11.09669 -10.51345 -10.28713 -10.01403 -9.75774 -9.61122 -9.03571 -8.00112 -5.29515 -0.68453 -0.35866 1.09176 1.36292 1.43323 1.44564 1.53655 1.63353 1.86010 2.02490 2.51926 2.62316 2.90138 3.27939 3.32749 3.43887 3.60739 3.73264 3.76978 3.80061 3.93135 4.02744 4.11222 4.30343 4.34293 4.37943 4.43597 4.46651 4.49263 4.54156 4.69013 4.71773 4.77599 4.87435 5.05953 5.07373 5.14439 5.16920 5.33630 5.37397 5.45553 5.48582 5.64582 5.71135 6.01012 6.22315 6.31914 6.55084 6.87533 6.97870 7.29081 8.00747 8.26769 9.22435 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016584 B = 0.002442 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.012004 B =11463.541987 C =12903.759605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.068 4.068 3 Si 0.969 3.031 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.065 0.935 9 N -0.729 5.729 10 C 0.168 3.832 11 H 0.030 0.970 12 C -0.119 4.119 13 C -0.122 4.122 14 C 0.073 3.927 15 N -0.581 5.581 16 C 0.552 3.448 17 O -0.580 6.580 18 C 0.104 3.896 19 C -0.140 4.140 20 C 0.171 3.829 21 N -0.418 5.418 22 C -0.038 4.038 23 C -0.043 4.043 24 N -0.516 5.516 25 C 0.177 3.823 26 C -0.145 4.145 27 C 0.134 3.866 28 N -0.462 5.462 29 C 0.104 3.896 30 H 0.253 0.747 31 H 0.378 0.622 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.164 0.836 38 H 0.143 0.857 39 H 0.226 0.774 40 H 0.198 0.802 41 H 0.217 0.783 42 H 0.192 0.808 43 H 0.224 0.776 44 H 0.051 0.949 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.702 -31.986 3.805 33.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.261 4.261 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.083 0.917 9 N -0.369 5.369 10 C 0.059 3.941 11 H 0.048 0.952 12 C -0.158 4.158 13 C -0.161 4.161 14 C -0.048 4.048 15 N -0.311 5.311 16 C 0.339 3.661 17 O -0.460 6.460 18 C -0.032 4.032 19 C -0.163 4.163 20 C 0.070 3.930 21 N -0.098 5.098 22 C -0.166 4.166 23 C -0.188 4.188 24 N -0.234 5.234 25 C -0.104 4.104 26 C -0.166 4.166 27 C -0.025 4.025 28 N -0.175 5.175 29 C -0.021 4.021 30 H 0.062 0.938 31 H 0.210 0.790 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.180 0.820 38 H 0.161 0.839 39 H 0.242 0.758 40 H 0.215 0.785 41 H 0.233 0.767 42 H 0.209 0.791 43 H 0.241 0.759 44 H 0.070 0.930 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.001 -30.776 3.971 32.923 hybrid contribution 0.202 1.588 0.217 1.616 sum 11.202 -29.188 4.188 31.543 Atomic orbital electron populations 1.69792 1.06292 1.26189 1.59024 1.25495 0.96427 1.00811 1.03358 0.85219 0.77621 0.79811 0.77602 1.21020 1.21659 1.20233 1.19511 0.91029 0.85456 1.41750 0.91728 1.42508 1.05530 1.00558 1.88287 1.20625 0.94638 0.86139 0.92747 0.95199 1.21768 0.98517 0.94682 1.00787 1.21933 1.00321 0.96633 0.97172 1.23291 0.99224 0.90560 0.91727 1.48174 1.18072 1.11071 1.53764 1.18454 0.81331 0.87900 0.78400 1.90777 1.59040 1.43810 1.52379 1.20515 0.90965 0.92335 0.99412 1.21662 0.96437 0.97050 1.01171 1.18065 0.83510 0.94259 0.97155 1.43317 1.08583 1.08606 1.49336 1.23507 0.95149 0.89943 1.07970 1.22962 0.97038 0.92694 1.06058 1.70351 1.24774 1.08247 1.19999 1.25699 0.84101 0.97858 1.02731 1.22586 0.94073 1.00451 0.99501 1.23763 0.93791 0.93750 0.91182 1.67559 1.35481 1.00158 1.14272 1.22324 0.96786 0.82881 1.00155 0.93800 0.78959 0.92166 0.91490 0.87224 0.92596 0.90652 0.82011 0.83921 0.75781 0.78511 0.76659 0.79097 0.75946 0.93046 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.46 13.06 21.65 0.28 -59.18 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.97 47.95 29.55 68.60 2.03 49.98 16 4 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.25 -14.28 9.93 84.04 0.83 -13.45 16 8 H 0.06 3.76 7.83 -2.91 -0.02 3.74 16 9 N -0.73 -37.87 5.13 -322.58 -1.65 -39.53 16 10 C 0.17 7.01 2.92 45.07 0.13 7.14 16 11 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 12 C -0.12 -3.76 5.35 30.62 0.16 -3.59 16 13 C -0.12 -2.77 6.08 30.67 0.19 -2.59 16 14 C 0.07 1.64 5.88 86.36 0.51 2.14 16 15 N -0.58 -18.55 2.97 -821.89 -2.44 -21.00 16 16 C 0.55 18.20 7.65 86.89 0.66 18.87 16 17 O -0.58 -24.02 15.79 -3.76 -0.06 -24.08 16 18 C 0.10 2.38 6.57 41.86 0.28 2.65 16 19 C -0.14 -2.81 9.06 22.73 0.21 -2.60 16 20 C 0.17 2.32 6.67 38.34 0.26 2.58 16 21 N -0.42 -6.03 2.99 -349.79 -1.04 -7.07 16 22 C -0.04 -0.37 10.89 83.03 0.90 0.54 16 23 C -0.04 -0.62 11.85 83.51 0.99 0.37 16 24 N -0.52 -11.02 11.24 -199.69 -2.25 -13.26 16 25 C 0.18 3.33 11.95 179.99 2.15 5.48 16 26 C -0.14 -0.82 9.55 22.54 0.22 -0.60 16 27 C 0.13 0.83 11.17 84.75 0.95 1.78 16 28 N -0.46 -7.21 6.13 -185.12 -1.14 -8.34 16 29 C 0.10 4.18 6.03 86.37 0.52 4.70 16 30 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.38 20.53 7.80 -92.71 -0.72 19.81 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 37 H 0.16 2.94 4.04 -64.87 -0.26 2.68 16 38 H 0.14 3.16 6.52 -2.91 -0.02 3.15 16 39 H 0.23 -0.08 7.22 -2.91 -0.02 -0.10 16 40 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.22 3.50 7.15 -2.91 -0.02 3.48 16 42 H 0.19 -0.55 6.94 -2.91 -0.02 -0.57 16 43 H 0.22 -0.72 8.06 -2.91 -0.02 -0.75 16 44 H 0.05 2.45 7.00 -2.39 -0.02 2.43 16 45 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -82.77 371.09 3.21 -79.56 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.06 Total: 23.06 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 9.42 Total: 19.86 kcal Atomic # 7 Polarization: -140.13 SS G_CDS: -8.24 Total: -148.37 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.06 Total: -24.08 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -82.77 3.21 -79.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000604924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.581 kcal (2) G-P(sol) polarization free energy of solvation -82.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds