Wall clock time and date at job start Sat Apr 11 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48498 * 109.47354 * 269.99945 * 3 2 1 5 5 H 1.48499 * 109.46953 * 30.00155 * 3 2 1 6 6 H 1.48501 * 109.46744 * 149.99676 * 3 2 1 7 7 C 1.38807 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99836 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99964 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.49659 * 325.00548 * 10 9 7 12 12 C 1.53039 * 109.52333 * 204.91949 * 10 9 7 13 13 C 1.53041 * 109.53655 * 178.66827 * 12 10 9 14 14 C 1.53193 * 109.31289 * 61.36455 * 13 12 10 15 15 N 1.46927 * 108.77538 * 305.36649 * 14 13 12 16 16 C 1.34777 * 120.63037 * 233.58199 * 15 14 13 17 17 O 1.21534 * 120.00141 * 172.13323 * 16 15 14 18 18 C 1.47980 * 119.99968 * 352.13410 * 16 15 14 19 19 C 1.39444 * 119.64868 * 170.37979 * 18 16 15 20 20 C 1.38346 * 119.13256 * 179.74868 * 19 18 16 21 21 C 1.39285 * 118.44089 * 0.52079 * 20 19 18 22 22 N 1.39872 * 120.39164 * 179.72552 * 21 20 19 23 23 C 1.37162 * 126.48156 * 180.02562 * 22 21 20 24 24 C 1.34633 * 106.82874 * 179.97438 * 23 22 21 25 25 N 1.34153 * 108.21244 * 359.97438 * 24 23 22 26 26 C 1.30490 * 109.36416 * 359.74482 * 25 24 23 27 27 C 1.39276 * 119.21637 * 359.74835 * 21 20 19 28 28 N 1.31375 * 120.80103 * 359.97287 * 27 21 20 29 29 C 1.46919 * 118.73913 * 53.60889 * 15 14 13 30 30 H 0.97002 * 119.99804 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00235 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.46094 * 298.68999 * 12 10 9 33 33 H 1.08992 * 109.46090 * 58.65053 * 12 10 9 34 34 H 1.08996 * 109.49649 * 301.41786 * 13 12 10 35 35 H 1.08997 * 109.52674 * 181.33207 * 13 12 10 36 36 H 1.09000 * 109.59116 * 185.57665 * 14 13 12 37 37 H 1.09005 * 109.58704 * 65.15186 * 14 13 12 38 38 H 1.07994 * 120.43576 * 0.02562 * 19 18 16 39 39 H 1.08006 * 120.77922 * 180.29157 * 20 19 18 40 40 H 1.07998 * 126.58679 * 359.97438 * 23 22 21 41 41 H 1.07998 * 125.88962 * 180.02562 * 24 23 22 42 42 H 1.08004 * 125.71920 * 180.25345 * 26 25 24 43 43 H 1.08001 * 119.59702 * 180.02562 * 27 21 20 44 44 H 1.09006 * 109.58875 * 186.60475 * 29 15 14 45 45 H 1.09004 * 109.70764 * 66.24857 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9684 -3.5508 -0.5916 12 6 1.1803 -4.7535 -0.6092 13 6 1.9571 -6.0717 -0.6410 14 6 2.3203 -6.4804 0.7900 15 7 3.0401 -5.3711 1.4304 16 6 4.2440 -5.5726 2.0017 17 8 4.8935 -4.6260 2.4005 18 6 4.7752 -6.9466 2.1433 19 6 6.0963 -7.1372 2.5468 20 6 6.5802 -8.4264 2.6808 21 6 5.7259 -9.4887 2.3949 22 7 6.1744 -10.8084 2.5112 23 6 5.4444 -11.9427 2.2623 24 6 6.2582 -12.9892 2.4972 25 7 7.4532 -12.5138 2.8786 26 6 7.4178 -11.2094 2.8855 27 6 4.4200 -9.2212 1.9914 28 7 3.9903 -7.9848 1.8796 29 6 2.4222 -4.0382 1.4366 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3880 -0.0005 32 1 0.2817 -4.8760 -0.0047 33 1 0.8994 -4.4731 -1.6243 34 1 2.8684 -5.9430 -1.2249 35 1 1.3404 -6.8472 -1.0954 36 1 2.9574 -7.3646 0.7671 37 1 1.4107 -6.6975 1.3501 38 1 6.7321 -6.2898 2.7562 39 1 7.5977 -8.6048 2.9961 40 1 4.4147 -11.9877 1.9399 41 1 5.9946 -14.0316 2.3953 42 1 8.2382 -10.5577 3.1477 43 1 3.7522 -10.0403 1.7686 44 1 3.1266 -3.3108 1.8403 45 1 1.5213 -4.0535 2.0500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000677916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:11 Heat of formation + Delta-G solvation = 107.994151 kcal Electronic energy + Delta-G solvation = -28698.720775 eV Core-core repulsion = 24718.784160 eV Total energy + Delta-G solvation = -3979.936616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.92145 -41.10338 -39.34982 -37.33613 -35.32793 -34.40567 -32.99801 -32.27741 -31.18699 -30.55580 -30.01602 -28.19334 -26.06435 -24.65800 -24.32184 -23.87278 -21.93042 -21.80267 -21.43635 -20.71316 -19.47474 -19.11027 -17.47287 -17.11452 -17.05063 -16.22193 -15.83075 -15.52670 -15.41284 -15.14354 -14.66141 -14.58118 -14.42658 -14.33105 -13.96575 -13.81558 -13.60474 -13.53998 -13.40174 -12.99283 -12.66200 -12.37170 -12.24763 -11.63915 -11.39391 -11.06749 -10.84932 -10.82478 -10.66627 -10.57647 -10.43549 -10.22151 -10.18907 -9.82437 -9.73888 -9.36092 -9.23783 -9.07187 -8.97277 -8.33948 -7.00487 -5.79162 -3.08919 -0.18703 0.50573 1.55377 1.97844 2.53311 2.63075 3.00255 3.40233 3.44318 3.49727 3.52008 3.65806 3.85675 3.92143 4.07877 4.22860 4.29319 4.57431 4.58848 4.83881 4.94031 5.05207 5.14912 5.16931 5.23583 5.28681 5.40083 5.48870 5.58444 5.67618 5.71999 5.82723 5.92268 6.08159 6.12046 6.17726 6.20615 6.27612 6.39178 6.49860 6.55790 6.75169 6.82438 6.99951 7.07123 7.41667 7.59704 7.71290 8.19695 8.39074 9.50777 10.04857 10.40313 11.43021 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027366 B = 0.002148 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.938390 B =13030.718877 C =13833.798354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.170 3.830 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.131 4.131 14 C 0.075 3.925 15 N -0.580 5.580 16 C 0.560 3.440 17 O -0.532 6.532 18 C 0.083 3.917 19 C -0.081 4.081 20 C -0.094 4.094 21 C 0.099 3.901 22 N -0.410 5.410 23 C -0.052 4.052 24 C -0.019 4.019 25 N -0.482 5.482 26 C 0.192 3.808 27 C 0.088 3.912 28 N -0.419 5.419 29 C 0.089 3.911 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.137 0.863 37 H 0.064 0.936 38 H 0.162 0.838 39 H 0.152 0.848 40 H 0.183 0.817 41 H 0.177 0.823 42 H 0.211 0.789 43 H 0.170 0.830 44 H 0.091 0.909 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.122 -26.377 4.009 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.166 4.166 13 C -0.170 4.170 14 C -0.048 4.048 15 N -0.311 5.311 16 C 0.345 3.655 17 O -0.409 6.409 18 C -0.055 4.055 19 C -0.103 4.103 20 C -0.121 4.121 21 C 0.003 3.997 22 N -0.090 5.090 23 C -0.181 4.181 24 C -0.164 4.164 25 N -0.199 5.199 26 C -0.089 4.089 27 C -0.074 4.074 28 N -0.130 5.130 29 C -0.035 4.035 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.082 0.918 38 H 0.180 0.820 39 H 0.169 0.831 40 H 0.200 0.800 41 H 0.194 0.806 42 H 0.227 0.773 43 H 0.187 0.813 44 H 0.109 0.891 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.344 -25.932 4.153 28.226 hybrid contribution 0.098 1.220 0.068 1.226 sum 10.442 -24.712 4.221 27.157 Atomic orbital electron populations 1.69666 1.05109 1.25750 1.57469 1.24755 0.95533 0.97765 1.02699 0.86184 0.78801 0.83690 0.77528 1.21689 1.21745 1.20598 1.19276 0.91114 0.83971 1.42965 0.91019 1.42388 1.05814 0.99578 1.88059 1.20475 0.94959 0.86485 0.92259 0.93139 1.21845 0.98724 0.94335 1.01654 1.21926 1.00485 0.97900 0.96674 1.22915 0.98455 0.91080 0.92353 1.48145 1.17714 1.11719 1.53490 1.17750 0.81866 0.86356 0.79500 1.90820 1.57798 1.41595 1.50690 1.21570 0.91769 0.93541 0.98576 1.22062 0.95485 0.97655 0.95058 1.21325 1.00423 0.90853 0.99526 1.19068 0.95840 0.82999 1.01803 1.43142 1.12112 1.04152 1.49599 1.22886 1.00133 0.84848 1.10283 1.22439 0.89712 0.99517 1.04739 1.70366 1.23537 1.07250 1.18730 1.25399 0.87653 0.92574 1.03318 1.22822 0.91791 0.95214 0.97547 1.67836 1.34865 0.98475 1.11804 1.22896 0.97847 0.81329 1.01443 0.93474 0.78055 0.92082 0.91587 0.92076 0.91157 0.84642 0.91812 0.82027 0.83078 0.80013 0.80556 0.77275 0.81323 0.89070 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.75 9.93 -15.06 -0.15 -6.90 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.72 -17.85 5.13 -53.31 -0.27 -18.12 16 10 C 0.17 3.39 2.92 -67.81 -0.20 3.19 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -2.04 5.36 -26.69 -0.14 -2.18 16 13 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 14 C 0.07 0.93 5.88 -3.71 -0.02 0.91 16 15 N -0.58 -9.09 2.97 -173.83 -0.52 -9.61 16 16 C 0.56 8.78 7.65 -12.27 -0.09 8.69 16 17 O -0.53 -10.07 15.79 5.34 0.08 -9.99 16 18 C 0.08 0.96 6.58 -83.01 -0.55 0.42 16 19 C -0.08 -0.73 9.62 -39.09 -0.38 -1.11 16 20 C -0.09 -0.60 9.57 -39.15 -0.37 -0.98 16 21 C 0.10 0.68 6.66 -83.41 -0.56 0.12 16 22 N -0.41 -2.76 2.98 -61.93 -0.18 -2.94 16 23 C -0.05 -0.31 10.86 -16.44 -0.18 -0.49 16 24 C -0.02 -0.13 11.85 -17.81 -0.21 -0.34 16 25 N -0.48 -4.39 11.24 -14.46 -0.16 -4.55 16 26 C 0.19 1.34 11.93 -89.59 -1.07 0.27 16 27 C 0.09 0.62 10.64 -17.36 -0.18 0.44 16 28 N -0.42 -4.08 6.11 -9.66 -0.06 -4.14 16 29 C 0.09 1.69 6.03 -3.71 -0.02 1.67 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.39 10.07 7.80 -40.82 -0.32 9.76 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.14 1.49 4.02 -84.76 -0.34 1.15 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.16 1.39 7.67 -52.49 -0.40 0.99 16 39 H 0.15 0.51 6.88 -52.48 -0.36 0.14 16 40 H 0.18 0.50 7.16 -52.49 -0.38 0.12 16 41 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.21 0.75 7.12 -52.48 -0.37 0.37 16 43 H 0.17 0.71 6.82 -52.49 -0.36 0.35 16 44 H 0.09 1.99 7.00 -51.93 -0.36 1.63 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -34.80 370.79 -10.02 -44.83 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.82 Total: 7.13 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -4.38 Total: 1.46 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -0.47 Total: -66.62 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.80 -10.02 -44.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000677916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.821 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds