Wall clock time and date at job start Sat Apr 11 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48498 * 109.47354 * 269.99945 * 3 2 1 5 5 H 1.48499 * 109.46953 * 30.00155 * 3 2 1 6 6 H 1.48501 * 109.46744 * 149.99676 * 3 2 1 7 7 C 1.38807 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99836 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99964 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.49659 * 325.00548 * 10 9 7 12 12 C 1.53039 * 109.52333 * 204.91949 * 10 9 7 13 13 C 1.53041 * 109.53655 * 178.66827 * 12 10 9 14 14 C 1.53193 * 109.31289 * 61.36455 * 13 12 10 15 15 N 1.46927 * 108.77538 * 305.36649 * 14 13 12 16 16 C 1.34777 * 120.63037 * 233.58199 * 15 14 13 17 17 O 1.21534 * 120.00141 * 172.13323 * 16 15 14 18 18 C 1.47980 * 119.99968 * 352.13410 * 16 15 14 19 19 C 1.39444 * 119.64868 * 170.37979 * 18 16 15 20 20 C 1.38346 * 119.13256 * 179.74868 * 19 18 16 21 21 C 1.39285 * 118.44089 * 0.52079 * 20 19 18 22 22 N 1.39872 * 120.39164 * 179.72552 * 21 20 19 23 23 C 1.37162 * 126.48156 * 180.02562 * 22 21 20 24 24 C 1.34633 * 106.82874 * 179.97438 * 23 22 21 25 25 N 1.34153 * 108.21244 * 359.97438 * 24 23 22 26 26 C 1.30490 * 109.36416 * 359.74482 * 25 24 23 27 27 C 1.39276 * 119.21637 * 359.74835 * 21 20 19 28 28 N 1.31375 * 120.80103 * 359.97287 * 27 21 20 29 29 C 1.46919 * 118.73913 * 53.60889 * 15 14 13 30 30 H 0.97002 * 119.99804 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00235 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.46094 * 298.68999 * 12 10 9 33 33 H 1.08992 * 109.46090 * 58.65053 * 12 10 9 34 34 H 1.08996 * 109.49649 * 301.41786 * 13 12 10 35 35 H 1.08997 * 109.52674 * 181.33207 * 13 12 10 36 36 H 1.09000 * 109.59116 * 185.57665 * 14 13 12 37 37 H 1.09005 * 109.58704 * 65.15186 * 14 13 12 38 38 H 1.07994 * 120.43576 * 0.02562 * 19 18 16 39 39 H 1.08006 * 120.77922 * 180.29157 * 20 19 18 40 40 H 1.07998 * 126.58679 * 359.97438 * 23 22 21 41 41 H 1.07998 * 125.88962 * 180.02562 * 24 23 22 42 42 H 1.08004 * 125.71920 * 180.25345 * 26 25 24 43 43 H 1.08001 * 119.59702 * 180.02562 * 27 21 20 44 44 H 1.09006 * 109.58875 * 186.60475 * 29 15 14 45 45 H 1.09004 * 109.70764 * 66.24857 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9684 -3.5508 -0.5916 12 6 1.1803 -4.7535 -0.6092 13 6 1.9571 -6.0717 -0.6410 14 6 2.3203 -6.4804 0.7900 15 7 3.0401 -5.3711 1.4304 16 6 4.2440 -5.5726 2.0017 17 8 4.8935 -4.6260 2.4005 18 6 4.7752 -6.9466 2.1433 19 6 6.0963 -7.1372 2.5468 20 6 6.5802 -8.4264 2.6808 21 6 5.7259 -9.4887 2.3949 22 7 6.1744 -10.8084 2.5112 23 6 5.4444 -11.9427 2.2623 24 6 6.2582 -12.9892 2.4972 25 7 7.4532 -12.5138 2.8786 26 6 7.4178 -11.2094 2.8855 27 6 4.4200 -9.2212 1.9914 28 7 3.9903 -7.9848 1.8796 29 6 2.4222 -4.0382 1.4366 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3880 -0.0005 32 1 0.2817 -4.8760 -0.0047 33 1 0.8994 -4.4731 -1.6243 34 1 2.8684 -5.9430 -1.2249 35 1 1.3404 -6.8472 -1.0954 36 1 2.9574 -7.3646 0.7671 37 1 1.4107 -6.6975 1.3501 38 1 6.7321 -6.2898 2.7562 39 1 7.5977 -8.6048 2.9961 40 1 4.4147 -11.9877 1.9399 41 1 5.9946 -14.0316 2.3953 42 1 8.2382 -10.5577 3.1477 43 1 3.7522 -10.0403 1.7686 44 1 3.1266 -3.3108 1.8403 45 1 1.5213 -4.0535 2.0500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000677916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:07 Heat of formation + Delta-G solvation = 86.435004 kcal Electronic energy + Delta-G solvation = -28699.655650 eV Core-core repulsion = 24718.784160 eV Total energy + Delta-G solvation = -3980.871490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -43.41657 -41.95733 -40.40294 -38.70845 -36.36745 -35.72384 -33.98401 -33.51280 -32.75090 -31.36418 -30.53699 -29.78665 -27.11677 -25.90960 -25.34405 -25.02530 -23.24958 -22.60738 -21.98054 -21.76553 -20.68820 -19.68120 -19.15873 -18.51240 -17.88461 -16.98576 -16.89387 -16.58508 -16.32404 -16.12775 -15.94133 -15.55730 -15.45258 -15.24630 -15.19468 -14.81335 -14.71878 -14.59736 -14.31873 -14.01569 -13.93700 -13.66335 -13.55484 -13.03901 -12.89388 -12.51440 -12.31004 -12.21459 -12.01987 -11.89677 -11.77420 -11.46790 -11.36091 -11.20604 -11.09191 -11.01641 -10.13978 -9.93964 -9.73573 -9.46771 -9.02645 -7.99410 -5.28953 -0.86396 -0.06235 0.97430 1.43839 1.45163 1.46886 1.54280 1.68380 1.87191 2.10577 2.52572 2.59743 2.88795 3.33350 3.33973 3.36093 3.49760 3.69557 3.79386 3.81608 3.94102 3.99723 4.10235 4.27867 4.37666 4.39881 4.42861 4.47451 4.59126 4.65629 4.72342 4.74476 4.78628 4.87390 4.99819 5.06138 5.12065 5.18439 5.29191 5.36880 5.44777 5.47566 5.66338 5.70380 6.07810 6.22822 6.30008 6.48628 6.95096 7.00012 7.29573 8.01223 8.27161 9.23137 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027366 B = 0.002148 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.938390 B =13030.718877 C =13833.798354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.069 4.069 3 Si 0.970 3.030 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.066 0.934 9 N -0.729 5.729 10 C 0.168 3.832 11 H 0.031 0.969 12 C -0.119 4.119 13 C -0.122 4.122 14 C 0.074 3.926 15 N -0.584 5.584 16 C 0.554 3.446 17 O -0.579 6.579 18 C 0.059 3.941 19 C -0.082 4.082 20 C -0.082 4.082 21 C 0.111 3.889 22 N -0.414 5.414 23 C -0.048 4.048 24 C -0.041 4.041 25 N -0.521 5.521 26 C 0.186 3.814 27 C 0.095 3.905 28 N -0.428 5.428 29 C 0.104 3.896 30 H 0.253 0.747 31 H 0.377 0.623 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.160 0.840 37 H 0.073 0.927 38 H 0.158 0.842 39 H 0.185 0.815 40 H 0.215 0.785 41 H 0.192 0.808 42 H 0.238 0.762 43 H 0.204 0.796 44 H 0.053 0.947 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.835 -29.535 3.860 31.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.377 4.377 8 H 0.084 0.916 9 N -0.369 5.369 10 C 0.059 3.941 11 H 0.049 0.951 12 C -0.157 4.157 13 C -0.160 4.160 14 C -0.047 4.047 15 N -0.314 5.314 16 C 0.342 3.658 17 O -0.459 6.459 18 C -0.077 4.077 19 C -0.103 4.103 20 C -0.109 4.109 21 C 0.015 3.985 22 N -0.094 5.094 23 C -0.176 4.176 24 C -0.185 4.185 25 N -0.238 5.238 26 C -0.095 4.095 27 C -0.068 4.068 28 N -0.139 5.139 29 C -0.021 4.021 30 H 0.062 0.938 31 H 0.210 0.790 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.176 0.824 37 H 0.092 0.908 38 H 0.176 0.824 39 H 0.202 0.798 40 H 0.232 0.768 41 H 0.209 0.791 42 H 0.254 0.746 43 H 0.220 0.780 44 H 0.071 0.929 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.079 -29.163 3.994 31.451 hybrid contribution -0.030 1.968 0.155 1.974 sum 11.049 -27.196 4.149 29.646 Atomic orbital electron populations 1.69799 1.06322 1.26168 1.59061 1.25510 0.96434 1.00860 1.03387 0.85202 0.77626 0.79746 0.77576 1.21060 1.21740 1.20130 1.19520 0.91071 0.85412 1.41690 0.91610 1.42514 1.05516 1.00572 1.88303 1.20625 0.94620 0.86082 0.92812 0.95094 1.21760 0.98497 0.94666 1.00806 1.21922 1.00353 0.96668 0.97102 1.23229 0.99065 0.90543 0.91874 1.48183 1.18204 1.10941 1.54099 1.18410 0.81182 0.87991 0.78213 1.90780 1.58974 1.43695 1.52427 1.20915 0.92967 0.91716 1.02133 1.22053 0.94468 0.98874 0.94920 1.21602 1.01840 0.89419 0.98035 1.19134 0.95776 0.83198 1.00429 1.43220 1.12297 1.04104 1.49763 1.23426 1.01220 0.84045 1.08893 1.22844 0.89576 1.00834 1.05257 1.70349 1.24874 1.08529 1.20019 1.25992 0.88381 0.92502 1.02599 1.23302 0.92446 0.94751 0.96270 1.67555 1.34829 0.98977 1.12525 1.22310 0.96789 0.82944 1.00075 0.93834 0.79005 0.91579 0.92157 0.92497 0.87406 0.82379 0.90830 0.82405 0.79775 0.76812 0.79147 0.74645 0.77952 0.92868 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.29 13.06 21.65 0.28 -59.00 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 3 Si 0.97 47.58 29.55 68.60 2.03 49.61 16 4 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.25 -14.15 9.93 84.03 0.83 -13.31 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.73 -37.69 5.13 -322.56 -1.65 -39.35 16 10 C 0.17 6.97 2.92 45.07 0.13 7.11 16 11 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 12 C -0.12 -3.76 5.36 30.62 0.16 -3.60 16 13 C -0.12 -2.81 6.08 30.67 0.19 -2.62 16 14 C 0.07 1.70 5.88 86.36 0.51 2.20 16 15 N -0.58 -18.53 2.97 -822.15 -2.44 -20.97 16 16 C 0.55 17.80 7.65 86.83 0.66 18.46 16 17 O -0.58 -23.18 15.79 -3.82 -0.06 -23.24 16 18 C 0.06 1.30 6.58 41.87 0.28 1.57 16 19 C -0.08 -1.35 9.62 22.59 0.22 -1.13 16 20 C -0.08 -0.78 9.57 22.55 0.22 -0.57 16 21 C 0.11 1.08 6.66 38.36 0.26 1.34 16 22 N -0.41 -3.96 2.98 -349.83 -1.04 -5.00 16 23 C -0.05 -0.38 10.86 83.03 0.90 0.53 16 24 C -0.04 -0.48 11.85 83.51 0.99 0.51 16 25 N -0.52 -8.34 11.24 -199.67 -2.25 -10.58 16 26 C 0.19 2.03 11.93 179.99 2.15 4.18 16 27 C 0.09 0.95 10.64 85.01 0.90 1.85 16 28 N -0.43 -7.14 6.11 -184.47 -1.13 -8.27 16 29 C 0.10 4.15 6.03 86.36 0.52 4.68 16 30 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.38 20.46 7.80 -92.71 -0.72 19.74 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.16 3.01 4.02 -67.21 -0.27 2.74 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.16 2.68 7.67 -2.91 -0.02 2.66 16 39 H 0.19 0.46 6.88 -2.91 -0.02 0.44 16 40 H 0.22 0.06 7.16 -2.91 -0.02 0.04 16 41 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.24 0.83 7.12 -2.91 -0.02 0.81 16 43 H 0.20 0.56 6.82 -2.91 -0.02 0.54 16 44 H 0.05 2.50 7.00 -2.38 -0.02 2.48 16 45 H 0.06 2.43 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -79.95 370.79 3.17 -76.78 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.05 Total: 22.45 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 9.38 Total: 17.59 kcal Atomic # 7 Polarization: -134.95 SS G_CDS: -8.23 Total: -143.18 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.06 Total: -23.24 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -79.95 3.17 -76.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000677916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.211 kcal (2) G-P(sol) polarization free energy of solvation -79.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds