Wall clock time and date at job start Sat Apr 11 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00072 * 2 1 4 4 H 1.48497 * 109.47484 * 270.27651 * 3 2 1 5 5 H 1.48507 * 109.46818 * 30.27614 * 3 2 1 6 6 H 1.48502 * 109.47260 * 150.27417 * 3 2 1 7 7 C 1.38812 * 120.00047 * 180.27626 * 2 1 3 8 8 H 1.07998 * 120.00257 * 179.72636 * 7 2 1 9 9 N 1.36944 * 119.99991 * 359.72947 * 7 2 1 10 10 C 1.46501 * 120.00189 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49314 * 34.92876 * 10 9 7 12 12 C 1.53038 * 109.49774 * 154.99452 * 10 9 7 13 13 C 1.53037 * 109.53388 * 181.31354 * 12 10 9 14 14 C 1.53192 * 109.31507 * 298.63511 * 13 12 10 15 15 N 1.46930 * 108.77330 * 54.63840 * 14 13 12 16 16 C 1.34779 * 120.63109 * 126.41368 * 15 14 13 17 17 O 1.21535 * 120.00082 * 179.82019 * 16 15 14 18 18 C 1.47978 * 119.99827 * 359.81819 * 16 15 14 19 19 C 1.39451 * 119.65113 * 201.94911 * 18 16 15 20 20 C 1.38343 * 119.13755 * 179.74822 * 19 18 16 21 21 C 1.39287 * 118.43513 * 0.52466 * 20 19 18 22 22 N 1.39878 * 120.38859 * 179.72705 * 21 20 19 23 23 C 1.37154 * 126.48619 * 180.02562 * 22 21 20 24 24 C 1.34618 * 106.83630 * 179.97438 * 23 22 21 25 25 N 1.34158 * 108.21211 * 359.97438 * 24 23 22 26 26 C 1.30492 * 109.36387 * 359.74444 * 25 24 23 27 27 C 1.39274 * 119.22566 * 359.74066 * 21 20 19 28 28 N 1.31388 * 120.79561 * 359.97438 * 27 21 20 29 29 C 1.46917 * 118.73666 * 306.38917 * 15 14 13 30 30 H 0.96993 * 119.99699 * 359.72748 * 1 2 3 31 31 H 0.96998 * 119.99850 * 359.97438 * 9 7 2 32 32 H 1.08991 * 109.46146 * 301.33255 * 12 10 9 33 33 H 1.08994 * 109.45914 * 61.31024 * 12 10 9 34 34 H 1.09000 * 109.50178 * 58.58755 * 13 12 10 35 35 H 1.09000 * 109.49883 * 178.68350 * 13 12 10 36 36 H 1.09007 * 109.58618 * 174.42532 * 14 13 12 37 37 H 1.08996 * 109.58836 * 294.84650 * 14 13 12 38 38 H 1.07996 * 120.42806 * 0.02562 * 19 18 16 39 39 H 1.07993 * 120.77896 * 180.24586 * 20 19 18 40 40 H 1.08007 * 126.58173 * 359.97438 * 23 22 21 41 41 H 1.08001 * 125.89902 * 180.02562 * 24 23 22 42 42 H 1.08003 * 125.72384 * 180.24762 * 26 25 24 43 43 H 1.07992 * 119.60652 * 180.02562 * 27 21 20 44 44 H 1.09007 * 109.58985 * 293.82118 * 29 15 14 45 45 H 1.09002 * 109.58619 * 173.40196 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4919 2.0498 -1.4000 5 1 1.4505 2.6509 0.7059 6 1 3.5507 1.4385 0.6942 7 6 2.0103 -1.2021 -0.0058 8 1 3.0903 -1.2022 -0.0103 9 7 1.3256 -2.3881 -0.0059 10 6 2.0581 -3.6569 -0.0115 11 1 2.9717 -3.5520 0.5737 12 6 1.1835 -4.7543 0.5991 13 6 1.9598 -6.0729 0.6237 14 6 2.3143 -6.4790 -0.8102 15 7 3.0310 -5.3688 -1.4526 16 6 4.2315 -5.5697 -2.0313 17 8 4.8128 -4.6439 -2.5623 18 6 4.8418 -6.9177 -2.0201 19 6 6.2200 -7.0524 -2.1848 20 6 6.7801 -8.3173 -2.1674 21 6 5.9378 -9.4133 -1.9958 22 7 6.4598 -10.7109 -1.9775 23 6 5.7497 -11.8734 -1.8184 24 6 6.6392 -12.8829 -1.8633 25 7 7.8603 -12.3579 -2.0453 26 6 7.7658 -11.0586 -2.1210 27 6 4.5696 -9.2021 -1.8430 28 7 4.0707 -7.9867 -1.8587 29 6 2.4138 -4.0355 -1.4526 30 1 -0.4849 0.8400 0.0040 31 1 0.3556 -2.3881 -0.0016 32 1 0.9086 -4.4757 1.6164 33 1 0.2814 -4.8753 -0.0005 34 1 2.8746 -5.9458 1.2025 35 1 1.3449 -6.8486 1.0800 36 1 2.9511 -7.3635 -0.7926 37 1 1.4014 -6.6945 -1.3653 38 1 6.8425 -6.1803 -2.3198 39 1 7.8447 -8.4520 -2.2885 40 1 4.6818 -11.9620 -1.6830 41 1 6.4094 -13.9340 -1.7699 42 1 8.5879 -10.3741 -2.2696 43 1 3.9110 -10.0474 -1.7092 44 1 1.5088 -4.0517 -2.0601 45 1 3.1161 -3.3077 -1.8590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000677920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:16 Heat of formation + Delta-G solvation = 105.752754 kcal Electronic energy + Delta-G solvation = -28718.232733 eV Core-core repulsion = 24738.198924 eV Total energy + Delta-G solvation = -3980.033810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -42.91598 -41.10149 -39.35966 -37.34878 -35.31550 -34.41616 -32.99679 -32.29244 -31.20517 -30.55745 -30.01195 -28.21099 -26.06669 -24.65229 -24.33892 -23.88591 -21.93636 -21.81673 -21.43476 -20.71053 -19.45431 -19.11081 -17.51264 -17.11810 -17.06389 -16.24413 -15.87355 -15.50063 -15.39487 -15.14823 -14.68990 -14.53699 -14.42683 -14.32705 -13.92760 -13.87504 -13.59058 -13.54770 -13.41155 -13.01302 -12.66220 -12.39359 -12.26773 -11.64567 -11.37234 -11.06778 -10.85531 -10.83708 -10.66556 -10.59311 -10.45689 -10.22947 -10.18483 -9.84264 -9.76049 -9.39077 -9.29453 -9.08538 -8.96204 -8.36360 -7.01744 -5.80094 -3.09986 -0.16690 0.50979 1.56736 1.98472 2.53752 2.63202 2.98530 3.32901 3.43960 3.49344 3.50633 3.70533 3.86625 3.92647 4.08093 4.23278 4.29033 4.57080 4.58391 4.84117 4.94622 5.04946 5.12159 5.17266 5.20364 5.28052 5.38056 5.47611 5.58700 5.65178 5.71957 5.80721 5.90758 6.05269 6.11849 6.15157 6.17808 6.24099 6.36625 6.48087 6.56313 6.72099 6.80615 6.98184 7.07655 7.42161 7.57345 7.69951 8.18848 8.38082 9.49806 10.03733 10.39126 11.42078 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026228 B = 0.002166 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.308382 B =12922.512623 C =13657.377772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.127 4.127 13 C -0.131 4.131 14 C 0.078 3.922 15 N -0.579 5.579 16 C 0.561 3.439 17 O -0.533 6.533 18 C 0.084 3.916 19 C -0.082 4.082 20 C -0.094 4.094 21 C 0.099 3.901 22 N -0.410 5.410 23 C -0.052 4.052 24 C -0.019 4.019 25 N -0.482 5.482 26 C 0.192 3.808 27 C 0.087 3.913 28 N -0.420 5.420 29 C 0.089 3.911 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.130 0.870 37 H 0.066 0.934 38 H 0.161 0.839 39 H 0.152 0.848 40 H 0.183 0.817 41 H 0.177 0.823 42 H 0.211 0.789 43 H 0.170 0.830 44 H 0.065 0.935 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.583 -26.045 -2.782 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.170 4.170 14 C -0.044 4.044 15 N -0.310 5.310 16 C 0.346 3.654 17 O -0.409 6.409 18 C -0.054 4.054 19 C -0.103 4.103 20 C -0.121 4.121 21 C 0.003 3.997 22 N -0.090 5.090 23 C -0.181 4.181 24 C -0.164 4.164 25 N -0.199 5.199 26 C -0.089 4.089 27 C -0.074 4.074 28 N -0.131 5.131 29 C -0.035 4.035 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.146 0.854 37 H 0.085 0.915 38 H 0.179 0.821 39 H 0.169 0.831 40 H 0.200 0.800 41 H 0.194 0.806 42 H 0.227 0.773 43 H 0.187 0.813 44 H 0.084 0.916 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.772 -25.618 -2.996 27.951 hybrid contribution 0.118 1.210 -0.062 1.217 sum 10.890 -24.408 -3.057 26.902 Atomic orbital electron populations 1.69662 1.05114 1.25776 1.57391 1.24756 0.95533 0.97777 1.02649 0.86180 0.78681 0.83673 0.77618 1.21587 1.21769 1.20691 1.19270 0.91095 0.83967 1.43078 0.91036 1.42384 1.05830 0.99561 1.88033 1.20478 0.95001 0.86520 0.92198 0.93155 1.21843 0.98753 0.94255 1.01699 1.21928 1.00543 0.97991 0.96564 1.22761 0.98335 0.90808 0.92516 1.48167 1.17856 1.11637 1.53374 1.17751 0.81626 0.86052 0.79977 1.90826 1.62100 1.42232 1.45785 1.21526 0.91462 0.93322 0.99053 1.22043 0.94954 0.98172 0.95176 1.21310 1.00734 0.90607 0.99482 1.19058 0.94901 0.83438 1.02331 1.43140 1.08801 1.04405 1.52651 1.22879 0.99753 0.84366 1.11147 1.22435 0.88096 0.99742 1.06144 1.70369 1.25193 1.06070 1.18256 1.25401 0.85432 0.93494 1.04612 1.22776 0.90667 0.95672 0.98274 1.67806 1.37354 0.98060 1.09859 1.22916 0.97947 0.81234 1.01395 0.93453 0.78032 0.91536 0.92029 0.92074 0.91135 0.85363 0.91539 0.82149 0.83077 0.80025 0.80561 0.77275 0.81334 0.91647 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.72 -17.74 5.12 -53.31 -0.27 -18.02 16 10 C 0.17 3.35 2.92 -67.81 -0.20 3.15 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.13 -2.02 5.35 -26.69 -0.14 -2.16 16 13 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 14 C 0.08 0.97 5.98 -3.71 -0.02 0.95 16 15 N -0.58 -9.06 2.97 -173.83 -0.52 -9.57 16 16 C 0.56 8.81 7.61 -12.27 -0.09 8.71 16 17 O -0.53 -10.11 15.94 5.34 0.09 -10.03 16 18 C 0.08 0.98 6.45 -83.01 -0.54 0.45 16 19 C -0.08 -0.75 9.61 -39.09 -0.38 -1.12 16 20 C -0.09 -0.61 9.57 -39.15 -0.37 -0.99 16 21 C 0.10 0.69 6.66 -83.41 -0.56 0.13 16 22 N -0.41 -2.79 2.98 -61.93 -0.18 -2.97 16 23 C -0.05 -0.31 10.86 -16.45 -0.18 -0.49 16 24 C -0.02 -0.14 11.85 -17.82 -0.21 -0.35 16 25 N -0.48 -4.42 11.24 -14.46 -0.16 -4.58 16 26 C 0.19 1.36 11.93 -89.58 -1.07 0.29 16 27 C 0.09 0.63 10.64 -17.36 -0.18 0.45 16 28 N -0.42 -4.14 6.36 -9.66 -0.06 -4.20 16 29 C 0.09 1.69 6.02 -3.72 -0.02 1.66 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.39 10.04 7.80 -40.82 -0.32 9.72 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.13 1.41 3.99 -78.53 -0.31 1.09 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.16 1.38 7.79 -52.49 -0.41 0.97 16 39 H 0.15 0.52 6.88 -52.49 -0.36 0.16 16 40 H 0.18 0.51 7.16 -52.48 -0.38 0.13 16 41 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.21 0.76 7.12 -52.48 -0.37 0.39 16 43 H 0.17 0.73 6.82 -52.49 -0.36 0.37 16 44 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 45 H 0.09 1.99 7.00 -51.93 -0.36 1.63 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -34.70 371.22 -9.99 -44.69 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.80 Total: 7.14 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -4.37 Total: 1.58 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -0.47 Total: -66.51 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.70 -9.99 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000677920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.443 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds