Wall clock time and date at job start Sat Apr 11 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48509 * 109.47304 * 240.00099 * 3 2 1 5 5 H 1.48501 * 109.47440 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47535 * 120.00035 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00171 * 163.17892 * 7 2 1 9 9 N 1.36940 * 120.00078 * 343.17980 * 7 2 1 10 10 C 1.46925 * 120.62821 * 151.92771 * 9 7 2 11 11 C 1.53192 * 108.89163 * 126.46045 * 10 9 7 12 12 C 1.53039 * 109.31624 * 54.56131 * 11 10 9 13 13 N 1.46495 * 109.46476 * 178.61195 * 12 11 10 14 14 C 1.34777 * 120.00118 * 204.99626 * 13 12 11 15 15 O 1.21512 * 120.00395 * 0.02562 * 14 13 12 16 16 C 1.48159 * 119.99954 * 179.97438 * 14 13 12 17 17 C 1.39224 * 119.68998 * 179.72974 * 16 14 13 18 18 C 1.38717 * 119.19085 * 179.75309 * 17 16 14 19 19 C 1.38400 * 118.55373 * 0.51307 * 18 17 16 20 20 C 1.39257 * 119.30396 * 359.72920 * 19 18 17 21 21 N 1.39834 * 119.61934 * 179.97438 * 20 19 18 22 22 C 1.37181 * 126.48527 * 184.73397 * 21 20 19 23 23 C 1.34617 * 106.82378 * 179.90088 * 22 21 20 24 24 N 1.34160 * 108.21944 * 0.36731 * 23 22 21 25 25 C 1.30480 * 109.37053 * 359.76640 * 24 23 22 26 26 N 1.31970 * 120.76073 * 0.02562 * 20 19 18 27 27 C 1.53044 * 109.53788 * 298.63849 * 12 11 10 28 28 C 1.46954 * 120.65206 * 331.73898 * 9 7 2 29 29 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.59026 * 6.59854 * 10 9 7 31 31 H 1.09002 * 109.58140 * 246.31504 * 10 9 7 32 32 H 1.09005 * 109.49706 * 174.50895 * 11 10 9 33 33 H 1.08998 * 109.49941 * 294.60655 * 11 10 9 34 34 H 1.09009 * 109.46191 * 58.63514 * 12 11 10 35 35 H 0.96996 * 120.00028 * 24.99554 * 13 12 11 36 36 H 1.07999 * 120.40458 * 359.97438 * 17 16 14 37 37 H 1.08001 * 120.71830 * 180.24465 * 18 17 16 38 38 H 1.08000 * 120.34817 * 179.70402 * 19 18 17 39 39 H 1.07998 * 126.58779 * 359.97438 * 22 21 20 40 40 H 1.07999 * 125.89036 * 180.12689 * 23 22 21 41 41 H 1.07995 * 125.71724 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.50000 * 181.31601 * 27 12 11 43 43 H 1.09010 * 109.49012 * 301.37841 * 27 12 11 44 44 H 1.09000 * 109.47125 * 113.75280 * 28 9 7 45 45 H 1.09000 * 109.71403 * 353.46652 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2221 -0.2712 9 7 1.3694 -2.3629 0.3421 10 6 1.8154 -3.6528 -0.2018 11 6 2.0654 -4.6207 0.9590 12 6 0.8079 -4.7058 1.8270 13 7 1.0320 -5.6559 2.9193 14 6 -0.0147 -6.2787 3.4962 15 8 -1.1445 -6.0526 3.1100 16 6 0.2121 -7.2401 4.6005 17 6 -0.8744 -7.8756 5.1956 18 6 -0.6498 -8.7776 6.2253 19 6 0.6532 -9.0056 6.6325 20 6 1.6935 -8.3321 5.9974 21 7 3.0124 -8.5572 6.4039 22 6 4.1300 -7.9086 5.9431 23 6 5.1824 -8.4313 6.5998 24 7 4.7279 -9.3789 7.4337 25 6 3.4304 -9.4641 7.3260 26 7 1.4490 -7.4832 5.0171 27 6 0.4929 -3.3255 2.4083 28 6 0.2251 -2.3429 1.2640 29 1 -0.4849 0.8401 0.0004 30 1 2.7376 -3.5124 -0.7656 31 1 1.0448 -4.0591 -0.8569 32 1 2.3024 -5.6088 0.5642 33 1 2.8992 -4.2594 1.5609 34 1 -0.0313 -5.0433 1.2186 35 1 1.9338 -5.8367 3.2274 36 1 -1.8795 -7.6715 4.8573 37 1 -1.4741 -9.2874 6.7017 38 1 0.8609 -9.6984 7.4346 39 1 4.1596 -7.1277 5.1976 40 1 6.2150 -8.1409 6.4739 41 1 2.7952 -10.1419 7.8768 42 1 -0.3893 -3.3916 3.0451 43 1 1.3413 -2.9766 2.9971 44 1 -0.6770 -2.6412 0.7298 45 1 0.0955 -1.3387 1.6675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003221578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:32 Heat of formation + Delta-G solvation = 78.586589 kcal Electronic energy + Delta-G solvation = -28730.966272 eV Core-core repulsion = 24749.754448 eV Total energy + Delta-G solvation = -3981.211823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.37891 -41.73561 -40.43468 -38.93309 -36.14134 -35.30128 -34.31795 -33.60178 -31.84307 -31.42991 -31.10676 -30.33114 -27.25748 -25.86151 -25.17822 -23.97226 -23.80101 -22.44422 -22.12165 -21.45346 -21.05084 -19.85089 -18.88401 -18.50454 -17.48700 -17.19197 -16.94815 -16.84883 -16.64226 -16.17091 -15.82262 -15.45019 -15.37798 -15.08718 -14.91897 -14.78711 -14.73120 -14.55214 -14.25726 -14.20784 -14.10079 -13.26189 -13.20027 -13.03458 -12.71314 -12.58430 -12.17981 -12.12355 -11.92978 -11.87281 -11.69113 -11.59003 -11.40055 -11.20838 -11.13570 -10.83076 -10.59319 -10.15041 -9.90966 -9.53525 -8.72954 -7.89048 -5.35319 -0.65396 -0.22928 1.08399 1.31198 1.46806 1.49348 1.56108 1.65439 1.94254 2.07780 2.50539 2.67632 2.85040 3.26981 3.43521 3.61165 3.67256 3.69657 3.82392 3.83263 3.91771 4.01339 4.20964 4.27258 4.34840 4.42595 4.45941 4.58131 4.62352 4.73989 4.78923 4.82835 4.93258 4.98623 5.01165 5.06961 5.10586 5.26671 5.27829 5.40836 5.44028 5.62148 5.63714 5.67432 6.01643 6.29863 6.37117 6.56103 6.92438 7.03950 7.11965 7.82469 8.35209 9.18129 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014946 B = 0.002454 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.000477 B =11408.308791 C =12608.630010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.264 4.264 8 H 0.072 0.928 9 N -0.609 5.609 10 C 0.143 3.857 11 C -0.122 4.122 12 C 0.160 3.840 13 N -0.692 5.692 14 C 0.563 3.437 15 O -0.563 6.563 16 C 0.094 3.906 17 C -0.123 4.123 18 C -0.035 4.035 19 C -0.141 4.141 20 C 0.326 3.674 21 N -0.416 5.416 22 C -0.041 4.041 23 C -0.040 4.040 24 N -0.514 5.514 25 C 0.202 3.798 26 N -0.492 5.492 27 C -0.130 4.130 28 C 0.183 3.817 29 H 0.250 0.750 30 H 0.068 0.932 31 H 0.015 0.985 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.415 0.585 36 H 0.158 0.842 37 H 0.201 0.799 38 H 0.192 0.808 39 H 0.185 0.815 40 H 0.189 0.811 41 H 0.254 0.746 42 H 0.049 0.951 43 H 0.057 0.943 44 H -0.007 1.007 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.516 -23.637 17.009 29.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.394 4.394 8 H 0.090 0.910 9 N -0.333 5.333 10 C 0.017 3.983 11 C -0.162 4.162 12 C 0.056 3.944 13 N -0.342 5.342 14 C 0.349 3.651 15 O -0.442 6.442 16 C -0.045 4.045 17 C -0.145 4.145 18 C -0.060 4.060 19 C -0.163 4.163 20 C 0.095 3.905 21 N -0.099 5.099 22 C -0.170 4.170 23 C -0.183 4.183 24 N -0.231 5.231 25 C -0.079 4.079 26 N -0.207 5.207 27 C -0.170 4.170 28 C 0.057 3.943 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.033 0.967 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.252 0.748 36 H 0.176 0.824 37 H 0.218 0.782 38 H 0.209 0.791 39 H 0.202 0.798 40 H 0.206 0.794 41 H 0.270 0.730 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.012 0.988 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.781 -23.311 16.738 28.833 hybrid contribution -0.520 1.541 -0.525 1.709 sum 2.261 -21.770 16.214 27.239 Atomic orbital electron populations 1.70192 1.06832 1.25980 1.55313 1.25863 0.96023 1.01738 1.01171 0.85319 0.77518 0.79033 0.78442 1.19847 1.22251 1.20347 1.19521 0.92972 0.85808 1.41083 0.90996 1.44327 1.35687 1.02647 1.50642 1.21017 0.98015 0.85512 0.93740 1.22144 0.96086 1.00441 0.97516 1.20795 0.98947 0.87481 0.87223 1.45968 1.10222 1.42300 1.35709 1.18253 0.84701 0.80287 0.81885 1.90800 1.23691 1.65485 1.64203 1.20682 0.88753 0.98097 0.96924 1.22436 1.00492 0.95491 0.96063 1.22038 0.97703 0.93501 0.92766 1.22291 0.91312 1.00952 1.01720 1.18435 0.84182 0.94811 0.93079 1.43259 1.04195 1.30280 1.32159 1.23142 0.85352 1.03440 1.05115 1.22718 1.00368 0.97507 0.97746 1.70344 1.09087 1.20191 1.23466 1.26180 0.92195 0.95574 0.94001 1.66589 1.24015 1.16753 1.13384 1.22314 1.00341 0.95663 0.98714 1.20467 0.87960 0.97221 0.88675 0.94109 0.91403 0.96705 0.89229 0.90936 0.91586 0.74790 0.82427 0.78247 0.79129 0.79816 0.79399 0.73033 0.93273 0.92380 0.98848 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.58 11.20 21.65 0.24 -56.34 16 2 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 3 Si 0.97 45.09 29.59 68.60 2.03 47.11 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.26 -14.49 9.58 84.03 0.81 -13.69 16 8 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 9 N -0.61 -30.82 3.00 -699.03 -2.10 -32.92 16 10 C 0.14 5.79 6.51 86.36 0.56 6.35 16 11 C -0.12 -3.88 5.55 30.67 0.17 -3.71 16 12 C 0.16 5.51 2.42 45.02 0.11 5.62 16 13 N -0.69 -19.79 5.07 -444.98 -2.25 -22.05 16 14 C 0.56 16.64 7.77 86.88 0.68 17.31 16 15 O -0.56 -20.42 15.98 -3.75 -0.06 -20.48 16 16 C 0.09 2.08 6.75 41.88 0.28 2.36 16 17 C -0.12 -1.91 9.63 22.62 0.22 -1.69 16 18 C -0.03 -0.23 10.16 22.42 0.23 -0.01 16 19 C -0.14 -1.03 9.51 22.55 0.21 -0.81 16 20 C 0.33 5.07 7.50 132.93 1.00 6.07 16 21 N -0.42 -6.68 2.98 -355.81 -1.06 -7.74 16 22 C -0.04 -0.75 11.17 83.03 0.93 0.18 16 23 C -0.04 -0.73 11.85 83.51 0.99 0.26 16 24 N -0.51 -9.91 11.24 -199.68 -2.25 -12.16 16 25 C 0.20 2.65 11.89 179.99 2.14 4.80 16 26 N -0.49 -10.10 9.07 -181.91 -1.65 -11.75 16 27 C -0.13 -5.28 5.65 30.67 0.17 -5.11 16 28 C 0.18 9.26 5.30 86.36 0.46 9.71 16 29 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 31 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.56 7.58 -2.38 -0.02 2.54 16 35 H 0.42 10.17 7.93 -92.71 -0.74 9.44 16 36 H 0.16 2.44 7.63 -2.91 -0.02 2.41 16 37 H 0.20 -0.40 8.06 -2.91 -0.02 -0.43 16 38 H 0.19 -0.29 6.77 -2.91 -0.02 -0.31 16 39 H 0.18 3.10 8.06 -2.91 -0.02 3.07 16 40 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.25 0.61 7.06 -2.91 -0.02 0.59 16 42 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 44 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 45 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 Total: -1.00 -77.91 375.80 2.56 -75.35 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.29 Total: 15.88 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 9.37 Total: 25.09 kcal Atomic # 7 Polarization: -133.88 SS G_CDS: -9.07 Total: -142.95 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.06 Total: -20.48 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -77.91 2.56 -75.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003221578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.933 kcal (2) G-P(sol) polarization free energy of solvation -77.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds