Wall clock time and date at job start Sat Apr 11 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47201 * 240.00132 * 3 2 1 5 5 H 1.48503 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47328 * 119.99601 * 3 2 1 7 7 C 1.38813 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 197.35250 * 7 2 1 9 9 N 1.36936 * 120.00195 * 17.36157 * 7 2 1 10 10 C 1.46931 * 120.63067 * 27.67060 * 9 7 2 11 11 C 1.53187 * 108.77328 * 126.41445 * 10 9 7 12 12 C 1.53039 * 109.34129 * 54.62137 * 11 10 9 13 13 C 1.53042 * 109.53673 * 298.67895 * 12 11 10 14 14 H 1.09000 * 109.47571 * 301.37057 * 13 12 11 15 15 N 1.46494 * 109.52362 * 181.30001 * 13 12 11 16 16 C 1.34783 * 119.99847 * 155.11585 * 15 13 12 17 17 O 1.21564 * 120.00258 * 359.97438 * 16 15 13 18 18 C 1.47693 * 119.99597 * 180.02562 * 16 15 13 19 19 C 1.41564 * 126.43325 * 179.97438 * 18 16 15 20 20 C 1.35338 * 105.55863 * 179.97438 * 19 18 16 21 21 N 1.35909 * 107.11019 * 0.02562 * 20 19 18 22 22 C 1.39912 * 124.96010 * 180.02562 * 21 20 19 23 23 C 1.39322 * 120.85792 * 359.71832 * 22 21 20 24 24 C 1.38015 * 119.07981 * 179.71508 * 23 22 21 25 25 N 1.31940 * 120.83279 * 0.57097 * 24 23 22 26 26 C 1.31935 * 121.88493 * 359.72275 * 25 24 23 27 27 C 1.38016 * 120.83081 * 359.97438 * 26 25 24 28 28 N 1.28479 * 110.07652 * 359.75867 * 21 20 19 29 29 C 1.46921 * 120.62787 * 207.69559 * 9 7 2 30 30 H 0.97006 * 120.00403 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.58644 * 6.62357 * 10 9 7 32 32 H 1.09000 * 109.69982 * 246.27127 * 10 9 7 33 33 H 1.09004 * 109.49732 * 174.58428 * 11 10 9 34 34 H 1.09000 * 109.49839 * 294.64876 * 11 10 9 35 35 H 1.08999 * 109.46398 * 58.66496 * 12 11 10 36 36 H 1.09001 * 109.46237 * 178.62967 * 12 11 10 37 37 H 0.96994 * 120.00413 * 335.11412 * 15 13 12 38 38 H 1.07996 * 127.22581 * 359.96677 * 19 18 16 39 39 H 1.07990 * 126.44361 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.45948 * 359.97438 * 23 22 21 41 41 H 1.08000 * 119.58668 * 180.29214 * 24 23 22 42 42 H 1.07991 * 119.58323 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.45519 * 180.02562 * 27 26 25 44 44 H 1.08993 * 109.59005 * 353.36718 * 29 9 7 45 45 H 1.09002 * 109.58930 * 113.80288 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2277 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8188 -4.6907 -1.8593 13 6 2.0741 -4.6104 -0.9876 14 1 2.9079 -4.2407 -1.5843 15 7 2.3962 -5.9423 -0.4694 16 6 3.6629 -6.2406 -0.1185 17 8 4.5382 -5.4046 -0.2324 18 6 3.9878 -7.5835 0.4034 19 6 5.2641 -8.0414 0.8100 20 6 5.0800 -9.3208 1.2110 21 7 3.7609 -9.6048 1.0487 22 6 3.1620 -10.8326 1.3511 23 6 3.9158 -11.8905 1.8550 24 6 3.2864 -13.0837 2.1461 25 7 1.9913 -13.2325 1.9424 26 6 1.2449 -12.2567 1.4613 27 6 1.7976 -11.0308 1.1506 28 7 3.1431 -8.5794 0.5824 29 6 1.8191 -3.6546 0.1822 30 1 -0.4851 0.8401 -0.0004 31 1 0.0984 -1.3268 -1.6673 32 1 -0.6758 -2.6397 -0.7456 33 1 -0.3803 -3.3680 -3.0661 34 1 1.3488 -2.9479 -3.0106 35 1 -0.0202 -5.0374 -1.2560 36 1 0.9894 -5.3887 -2.6790 37 1 1.6980 -6.6094 -0.3788 38 1 6.1905 -7.4863 0.8019 39 1 5.8388 -9.9904 1.5881 40 1 4.9772 -11.7769 2.0194 41 1 3.8620 -13.9076 2.5416 42 1 0.1883 -12.4193 1.3088 43 1 1.1808 -10.2361 0.7575 44 1 2.7399 -3.5171 0.7490 45 1 1.0467 -4.0684 0.8304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007894357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:17 Heat of formation + Delta-G solvation = 113.448115 kcal Electronic energy + Delta-G solvation = -28487.487934 eV Core-core repulsion = 24507.787820 eV Total energy + Delta-G solvation = -3979.700114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.29770 -40.54640 -39.42106 -37.28720 -34.82502 -34.31750 -32.46284 -32.17838 -31.02826 -30.74869 -30.42570 -28.62050 -25.36126 -25.24595 -24.43339 -23.03146 -22.08942 -21.63970 -21.48311 -19.99539 -19.38209 -19.04176 -17.32909 -16.75324 -16.59794 -16.58865 -16.42658 -15.63312 -15.38933 -14.78055 -14.68694 -14.40233 -14.26762 -14.14001 -13.96135 -13.82304 -13.38356 -13.36889 -13.04844 -12.39014 -12.37778 -12.32427 -11.80347 -11.30157 -11.21615 -11.06220 -10.87102 -10.75732 -10.25539 -10.23063 -10.21461 -10.10349 -9.87874 -9.86225 -9.67048 -9.62599 -9.59967 -9.10234 -8.79991 -8.36860 -6.64556 -5.75175 -3.17091 0.09910 0.46727 1.58502 1.81333 1.88889 3.20557 3.27307 3.43669 3.45505 3.48053 3.51371 3.76493 3.84894 4.09046 4.34111 4.38470 4.51590 4.56049 4.76972 4.95569 5.08249 5.16341 5.24739 5.31260 5.39762 5.40766 5.46366 5.56917 5.64495 5.75256 5.91116 6.02659 6.10266 6.17427 6.27157 6.39921 6.54982 6.63445 6.67517 6.71954 6.86239 7.00996 7.33873 7.37083 7.40114 7.67645 7.78056 7.86162 8.36568 8.49624 9.25352 9.87694 10.43444 11.33580 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020621 B = 0.002173 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.499028 B =12884.384988 C =13549.392702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.139 4.139 12 C -0.114 4.114 13 C 0.125 3.875 14 H 0.089 0.911 15 N -0.706 5.706 16 C 0.597 3.403 17 O -0.522 6.522 18 C 0.015 3.985 19 C -0.163 4.163 20 C -0.016 4.016 21 N -0.246 5.246 22 C 0.190 3.810 23 C -0.187 4.187 24 C 0.126 3.874 25 N -0.489 5.489 26 C 0.125 3.875 27 C -0.166 4.166 28 N -0.259 5.259 29 C 0.142 3.858 30 H 0.254 0.746 31 H 0.090 0.910 32 H 0.019 0.981 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.401 0.599 38 H 0.173 0.827 39 H 0.188 0.812 40 H 0.146 0.854 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.154 0.846 44 H 0.059 0.941 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.606 -27.190 1.405 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.107 0.893 15 N -0.356 5.356 16 C 0.380 3.620 17 O -0.396 6.396 18 C -0.148 4.148 19 C -0.190 4.190 20 C -0.154 4.154 21 N -0.028 5.028 22 C 0.090 3.910 23 C -0.209 4.209 24 C -0.032 4.032 25 N -0.199 5.199 26 C -0.032 4.032 27 C -0.188 4.188 28 N -0.091 5.091 29 C 0.014 3.986 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.235 0.765 38 H 0.190 0.810 39 H 0.205 0.795 40 H 0.164 0.836 41 H 0.185 0.815 42 H 0.186 0.814 43 H 0.172 0.828 44 H 0.077 0.923 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 4.591 -27.516 1.421 27.932 hybrid contribution 1.360 1.507 0.016 2.030 sum 5.951 -26.008 1.437 26.719 Atomic orbital electron populations 1.70033 1.05231 1.25580 1.54060 1.25023 0.95303 0.98398 1.00957 0.86343 0.78888 0.83182 0.78242 1.20963 1.21681 1.20855 1.19187 0.92816 0.84666 1.41287 0.91551 1.43995 1.35602 1.01023 1.50381 1.20845 0.88575 0.98588 0.87887 1.22180 1.00473 0.95113 1.00131 1.21676 0.96687 0.98641 0.98263 1.21832 0.98030 0.80847 0.97284 0.89341 1.46012 1.08790 1.16090 1.64700 1.16804 0.83285 0.83984 0.77967 1.90846 1.47260 1.47618 1.53877 1.22402 0.92060 0.94659 1.05714 1.21955 0.99109 0.94134 1.03831 1.23068 0.86400 0.98646 1.07330 1.42646 1.06316 1.08468 1.45368 1.17928 0.93128 0.82575 0.97330 1.21917 1.01884 0.93421 1.03717 1.22718 0.90582 0.95534 0.94322 1.67734 1.06740 1.32894 1.12493 1.22826 1.00558 0.87415 0.92359 1.22076 0.93295 1.00675 1.02769 1.73543 1.25459 0.94344 1.15767 1.21187 0.98038 0.86796 0.92542 0.93630 0.89227 0.96289 0.92677 0.92367 0.92176 0.93023 0.76534 0.80995 0.79522 0.83620 0.81488 0.81402 0.82799 0.92293 0.96414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 11.19 55.49 0.62 -25.88 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 22.24 29.59 -169.99 -5.03 17.21 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -7.10 9.59 -15.06 -0.14 -7.24 16 8 H 0.07 1.89 7.89 -52.49 -0.41 1.48 16 9 N -0.59 -15.13 2.99 -172.32 -0.52 -15.64 16 10 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 11 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 12 C -0.11 -1.89 5.36 -26.69 -0.14 -2.03 16 13 C 0.13 2.31 2.60 -67.81 -0.18 2.13 16 14 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 15 N -0.71 -11.05 5.08 -54.68 -0.28 -11.33 16 16 C 0.60 9.93 7.79 -12.40 -0.10 9.84 16 17 O -0.52 -10.51 16.59 5.31 0.09 -10.42 16 18 C 0.02 0.21 7.13 -82.75 -0.59 -0.38 16 19 C -0.16 -1.82 10.80 -39.35 -0.42 -2.24 16 20 C -0.02 -0.14 10.82 -16.78 -0.18 -0.32 16 21 N -0.25 -2.49 3.51 -10.37 -0.04 -2.53 16 22 C 0.19 1.58 6.70 -83.36 -0.56 1.03 16 23 C -0.19 -1.07 9.50 -39.26 -0.37 -1.44 16 24 C 0.13 0.71 11.18 -17.59 -0.20 0.51 16 25 N -0.49 -3.73 10.36 -13.32 -0.14 -3.87 16 26 C 0.13 0.85 11.18 -17.59 -0.20 0.65 16 27 C -0.17 -1.29 9.67 -39.26 -0.38 -1.67 16 28 N -0.26 -3.20 10.94 33.43 0.37 -2.84 16 29 C 0.14 3.17 6.09 -3.71 -0.02 3.14 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.09 2.39 6.04 -51.93 -0.31 2.07 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.40 5.33 8.32 -40.82 -0.34 4.99 16 38 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.19 0.77 7.04 -52.49 -0.37 0.40 16 40 H 0.15 0.43 6.78 -52.49 -0.36 0.07 16 41 H 0.17 0.43 8.06 -52.49 -0.42 0.00 16 42 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.15 1.17 7.74 -52.48 -0.41 0.77 16 44 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -34.65 376.91 -8.94 -43.59 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.94 Total: 2.92 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -3.75 Total: 3.09 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.02 Total: -62.08 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.65 -8.94 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007894357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.041 kcal (2) G-P(sol) polarization free energy of solvation -34.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds