Wall clock time and date at job start Sat Apr 11 2020 06:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47201 * 240.00132 * 3 2 1 5 5 H 1.48503 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47328 * 119.99601 * 3 2 1 7 7 C 1.38813 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 197.35250 * 7 2 1 9 9 N 1.36936 * 120.00195 * 17.36157 * 7 2 1 10 10 C 1.46931 * 120.63067 * 27.67060 * 9 7 2 11 11 C 1.53187 * 108.77328 * 126.41445 * 10 9 7 12 12 C 1.53039 * 109.34129 * 54.62137 * 11 10 9 13 13 C 1.53042 * 109.53673 * 298.67895 * 12 11 10 14 14 H 1.09000 * 109.47571 * 301.37057 * 13 12 11 15 15 N 1.46494 * 109.52362 * 181.30001 * 13 12 11 16 16 C 1.34783 * 119.99847 * 155.11585 * 15 13 12 17 17 O 1.21564 * 120.00258 * 359.97438 * 16 15 13 18 18 C 1.47693 * 119.99597 * 180.02562 * 16 15 13 19 19 C 1.41564 * 126.43325 * 179.97438 * 18 16 15 20 20 C 1.35338 * 105.55863 * 179.97438 * 19 18 16 21 21 N 1.35909 * 107.11019 * 0.02562 * 20 19 18 22 22 C 1.39912 * 124.96010 * 180.02562 * 21 20 19 23 23 C 1.39322 * 120.85792 * 359.71832 * 22 21 20 24 24 C 1.38015 * 119.07981 * 179.71508 * 23 22 21 25 25 N 1.31940 * 120.83279 * 0.57097 * 24 23 22 26 26 C 1.31935 * 121.88493 * 359.72275 * 25 24 23 27 27 C 1.38016 * 120.83081 * 359.97438 * 26 25 24 28 28 N 1.28479 * 110.07652 * 359.75867 * 21 20 19 29 29 C 1.46921 * 120.62787 * 207.69559 * 9 7 2 30 30 H 0.97006 * 120.00403 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.58644 * 6.62357 * 10 9 7 32 32 H 1.09000 * 109.69982 * 246.27127 * 10 9 7 33 33 H 1.09004 * 109.49732 * 174.58428 * 11 10 9 34 34 H 1.09000 * 109.49839 * 294.64876 * 11 10 9 35 35 H 1.08999 * 109.46398 * 58.66496 * 12 11 10 36 36 H 1.09001 * 109.46237 * 178.62967 * 12 11 10 37 37 H 0.96994 * 120.00413 * 335.11412 * 15 13 12 38 38 H 1.07996 * 127.22581 * 359.96677 * 19 18 16 39 39 H 1.07990 * 126.44361 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.45948 * 359.97438 * 23 22 21 41 41 H 1.08000 * 119.58668 * 180.29214 * 24 23 22 42 42 H 1.07991 * 119.58323 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.45519 * 180.02562 * 27 26 25 44 44 H 1.08993 * 109.59005 * 353.36718 * 29 9 7 45 45 H 1.09002 * 109.58930 * 113.80288 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2277 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8188 -4.6907 -1.8593 13 6 2.0741 -4.6104 -0.9876 14 1 2.9079 -4.2407 -1.5843 15 7 2.3962 -5.9423 -0.4694 16 6 3.6629 -6.2406 -0.1185 17 8 4.5382 -5.4046 -0.2324 18 6 3.9878 -7.5835 0.4034 19 6 5.2641 -8.0414 0.8100 20 6 5.0800 -9.3208 1.2110 21 7 3.7609 -9.6048 1.0487 22 6 3.1620 -10.8326 1.3511 23 6 3.9158 -11.8905 1.8550 24 6 3.2864 -13.0837 2.1461 25 7 1.9913 -13.2325 1.9424 26 6 1.2449 -12.2567 1.4613 27 6 1.7976 -11.0308 1.1506 28 7 3.1431 -8.5794 0.5824 29 6 1.8191 -3.6546 0.1822 30 1 -0.4851 0.8401 -0.0004 31 1 0.0984 -1.3268 -1.6673 32 1 -0.6758 -2.6397 -0.7456 33 1 -0.3803 -3.3680 -3.0661 34 1 1.3488 -2.9479 -3.0106 35 1 -0.0202 -5.0374 -1.2560 36 1 0.9894 -5.3887 -2.6790 37 1 1.6980 -6.6094 -0.3788 38 1 6.1905 -7.4863 0.8019 39 1 5.8388 -9.9904 1.5881 40 1 4.9772 -11.7769 2.0194 41 1 3.8620 -13.9076 2.5416 42 1 0.1883 -12.4193 1.3088 43 1 1.1808 -10.2361 0.7575 44 1 2.7399 -3.5171 0.7490 45 1 1.0467 -4.0684 0.8304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007894357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:16 Heat of formation + Delta-G solvation = 90.004683 kcal Electronic energy + Delta-G solvation = -28488.504518 eV Core-core repulsion = 24507.787820 eV Total energy + Delta-G solvation = -3980.716697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.09314 -41.15184 -40.73130 -38.94531 -35.99927 -35.52183 -34.18041 -32.75946 -32.36283 -31.73691 -31.60362 -30.12330 -27.27736 -26.28798 -24.98440 -24.07589 -23.87745 -22.85913 -22.30935 -21.34635 -20.82194 -19.77763 -18.73281 -18.40567 -17.42140 -17.24916 -17.11269 -16.88989 -16.66479 -16.15355 -16.00823 -15.71154 -15.31269 -15.18631 -14.91640 -14.79638 -14.71169 -14.68822 -14.29817 -14.09158 -14.02761 -13.42483 -13.04274 -12.83788 -12.73252 -12.61401 -12.18189 -12.13226 -11.98771 -11.90905 -11.81419 -11.63944 -11.34265 -11.23181 -10.69385 -10.62911 -10.45285 -10.29926 -10.22025 -9.80323 -8.71560 -7.91217 -5.36854 -0.52792 0.02114 0.60548 1.10440 1.18934 1.44484 1.47022 1.54436 2.03191 2.24797 2.50288 2.73634 3.02356 3.22819 3.48051 3.56861 3.60924 3.73629 3.83653 3.84989 4.02343 4.06186 4.07683 4.22792 4.43468 4.45126 4.45845 4.53158 4.59833 4.65504 4.77689 4.78077 4.88980 4.90799 4.99104 5.09328 5.10885 5.19402 5.24024 5.41148 5.46067 5.52776 5.61871 5.74900 5.76739 6.34403 6.37026 6.68470 6.88060 7.09195 7.12808 7.80549 8.31182 9.14571 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020621 B = 0.002173 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.499028 B =12884.384988 C =13549.392702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.045 4.045 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.269 4.269 8 H 0.055 0.945 9 N -0.606 5.606 10 C 0.170 3.830 11 C -0.128 4.128 12 C -0.105 4.105 13 C 0.141 3.859 14 H 0.064 0.936 15 N -0.695 5.695 16 C 0.597 3.403 17 O -0.567 6.567 18 C -0.016 4.016 19 C -0.185 4.185 20 C 0.008 3.992 21 N -0.241 5.241 22 C 0.160 3.840 23 C -0.172 4.172 24 C 0.124 3.876 25 N -0.509 5.509 26 C 0.121 3.879 27 C -0.177 4.177 28 N -0.268 5.268 29 C 0.145 3.855 30 H 0.253 0.747 31 H 0.057 0.943 32 H 0.005 0.995 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.414 0.586 38 H 0.177 0.823 39 H 0.238 0.762 40 H 0.180 0.820 41 H 0.201 0.799 42 H 0.187 0.813 43 H 0.148 0.852 44 H 0.032 0.968 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.397 -30.366 1.469 31.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.241 4.241 3 Si 0.795 3.205 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.399 4.399 8 H 0.072 0.928 9 N -0.330 5.330 10 C 0.045 3.955 11 C -0.168 4.168 12 C -0.143 4.143 13 C 0.035 3.965 14 H 0.083 0.917 15 N -0.346 5.346 16 C 0.381 3.619 17 O -0.443 6.443 18 C -0.178 4.178 19 C -0.212 4.212 20 C -0.130 4.130 21 N -0.024 5.024 22 C 0.061 3.939 23 C -0.194 4.194 24 C -0.033 4.033 25 N -0.219 5.219 26 C -0.035 4.035 27 C -0.199 4.199 28 N -0.102 5.102 29 C 0.018 3.982 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.251 0.749 38 H 0.194 0.806 39 H 0.254 0.746 40 H 0.197 0.803 41 H 0.217 0.783 42 H 0.204 0.796 43 H 0.166 0.834 44 H 0.050 0.950 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 5.355 -30.747 1.481 31.245 hybrid contribution 1.103 2.301 0.105 2.554 sum 6.458 -28.446 1.586 29.213 Atomic orbital electron populations 1.70167 1.06402 1.26119 1.54807 1.25753 0.96161 1.01302 1.00885 0.85348 0.77688 0.79165 0.78299 1.20426 1.21253 1.20419 1.19377 0.92662 0.86261 1.41600 0.92754 1.44227 1.36031 1.01441 1.51312 1.20738 0.87489 0.98288 0.88958 1.22013 1.01544 0.94949 0.98281 1.21615 0.95718 0.97914 0.99008 1.21366 0.98348 0.81269 0.95486 0.91729 1.45806 1.09232 1.15181 1.64405 1.17219 0.82780 0.84897 0.76956 1.90810 1.48426 1.49394 1.55719 1.21999 0.93728 0.93799 1.08237 1.22156 0.98463 0.95546 1.05015 1.23741 0.86391 0.98086 1.04827 1.42884 1.06990 1.08393 1.44123 1.18310 0.93789 0.82549 0.99210 1.22288 1.03319 0.92169 1.01625 1.23320 0.90142 0.96432 0.93394 1.67784 1.07959 1.33298 1.12845 1.23111 1.01507 0.86894 0.92015 1.22157 0.93517 1.01022 1.03173 1.73454 1.25739 0.94730 1.16275 1.21195 0.96485 0.86552 0.93937 0.93821 0.92466 0.97733 0.89551 0.93134 0.90777 0.89532 0.74886 0.80562 0.74617 0.80278 0.78280 0.79611 0.83410 0.94959 0.96414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 11.19 21.65 0.24 -55.74 16 2 C -0.05 -2.63 4.91 84.86 0.42 -2.21 16 3 Si 0.97 46.78 29.59 68.60 2.03 48.81 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.27 -15.88 9.59 84.03 0.81 -15.08 16 8 H 0.05 3.26 7.89 -2.91 -0.02 3.24 16 9 N -0.61 -32.46 2.99 -699.10 -2.09 -34.55 16 10 C 0.17 8.33 5.31 86.36 0.46 8.79 16 11 C -0.13 -4.72 6.08 30.67 0.19 -4.54 16 12 C -0.10 -3.28 5.36 30.62 0.16 -3.12 16 13 C 0.14 5.29 2.60 45.07 0.12 5.41 16 14 H 0.06 2.77 7.58 -2.39 -0.02 2.75 16 15 N -0.70 -21.97 5.08 -445.17 -2.26 -24.23 16 16 C 0.60 20.48 7.79 86.74 0.68 21.16 16 17 O -0.57 -23.97 16.59 -3.92 -0.06 -24.04 16 18 C -0.02 -0.45 7.13 42.47 0.30 -0.14 16 19 C -0.18 -3.94 10.80 22.42 0.24 -3.70 16 20 C 0.01 0.11 10.82 83.39 0.90 1.01 16 21 N -0.24 -4.38 3.51 -186.73 -0.66 -5.03 16 22 C 0.16 2.28 6.70 38.37 0.26 2.53 16 23 C -0.17 -1.29 9.50 22.48 0.21 -1.08 16 24 C 0.12 0.95 11.18 84.62 0.95 1.90 16 25 N -0.51 -6.50 10.36 -196.06 -2.03 -8.53 16 26 C 0.12 1.43 11.18 84.62 0.95 2.38 16 27 C -0.18 -2.51 9.67 22.48 0.22 -2.30 16 28 N -0.27 -6.42 10.94 -48.15 -0.53 -6.95 16 29 C 0.15 6.75 6.09 86.37 0.53 7.28 16 30 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 31 H 0.06 3.15 6.04 -2.39 -0.01 3.14 16 32 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 36 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.41 10.79 8.32 -92.71 -0.77 10.02 16 38 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.24 0.67 7.04 -2.92 -0.02 0.65 16 40 H 0.18 0.03 6.78 -2.91 -0.02 0.01 16 41 H 0.20 0.11 8.06 -2.91 -0.02 0.08 16 42 H 0.19 1.27 8.06 -2.92 -0.02 1.24 16 43 H 0.15 2.19 7.74 -2.91 -0.02 2.17 16 44 H 0.03 1.63 7.93 -2.39 -0.02 1.61 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -79.94 376.91 2.27 -77.67 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.25 Total: 14.31 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 7.38 Total: 18.29 kcal Atomic # 7 Polarization: -127.72 SS G_CDS: -7.33 Total: -135.04 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -79.94 2.27 -77.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007894357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.671 kcal (2) G-P(sol) polarization free energy of solvation -79.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds