Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99866 * 2 1 4 4 H 1.48498 * 109.46623 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46994 * 300.00074 * 3 2 1 6 6 H 1.48495 * 109.47161 * 60.00141 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99850 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00427 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00266 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.47964 * 34.29329 * 10 9 7 12 12 C 1.55056 * 110.65555 * 271.55059 * 10 9 7 13 13 C 1.54199 * 102.50685 * 201.89228 * 12 10 9 14 14 C 1.54313 * 104.34681 * 38.99563 * 13 12 10 15 15 H 1.09005 * 111.69069 * 98.35924 * 14 13 12 16 16 C 1.53776 * 109.79904 * 222.84480 * 14 13 12 17 17 N 1.47208 * 106.38076 * 132.75227 * 16 14 13 18 18 C 1.34782 * 126.70260 * 148.70371 * 17 16 14 19 19 O 1.21591 * 119.99837 * 353.95975 * 18 17 16 20 20 C 1.47577 * 120.00363 * 173.96060 * 18 17 16 21 21 C 1.41519 * 120.56443 * 340.92457 * 20 18 17 22 22 N 1.30906 * 120.16440 * 179.68123 * 21 20 18 23 23 C 1.34257 * 121.27339 * 0.62169 * 22 21 20 24 24 N 1.32424 * 131.63669 * 179.68004 * 23 22 21 25 25 C 1.33699 * 109.32546 * 179.97438 * 24 23 22 26 26 C 1.34906 * 108.66063 * 0.02562 * 25 24 23 27 27 N 1.37009 * 107.05172 * 359.97438 * 26 25 24 28 28 C 1.35969 * 132.54804 * 180.02562 * 27 26 25 29 29 C 1.47217 * 106.60025 * 328.72592 * 17 16 14 30 30 C 1.53773 * 106.37829 * 31.27825 * 29 17 16 31 31 H 1.09000 * 112.38523 * 103.14678 * 30 29 17 32 32 H 0.96995 * 119.99944 * 359.97438 * 1 2 3 33 33 H 0.96998 * 120.00106 * 359.97438 * 9 7 2 34 34 H 1.08997 * 110.90175 * 319.47036 * 12 10 9 35 35 H 1.08998 * 110.90664 * 83.06862 * 12 10 9 36 36 H 1.08999 * 109.35378 * 280.73155 * 13 12 10 37 37 H 1.09000 * 111.32016 * 158.23928 * 13 12 10 38 38 H 1.08995 * 110.07886 * 251.98504 * 16 14 13 39 39 H 1.09005 * 110.06951 * 13.47245 * 16 14 13 40 40 H 1.07999 * 119.91741 * 359.97438 * 21 20 18 41 41 H 1.08004 * 125.66792 * 180.02562 * 25 24 23 42 42 H 1.07996 * 126.47152 * 180.02562 * 26 25 24 43 43 H 1.07995 * 120.58002 * 0.02562 * 28 27 26 44 44 H 1.08991 * 110.06976 * 272.05157 * 29 17 16 45 45 H 1.08997 * 110.07100 * 150.50744 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9789 -3.5655 0.5745 12 6 2.3666 -4.1102 -1.4519 13 6 2.5887 -5.6272 -1.2874 14 6 1.5273 -6.0592 -0.2540 15 1 0.6474 -6.4867 -0.7349 16 6 2.1521 -7.0339 0.7581 17 7 1.7444 -6.5645 2.0925 18 6 1.5286 -7.3264 3.1832 19 8 1.5616 -8.5386 3.0942 20 6 1.2523 -6.6894 4.4854 21 6 1.5959 -5.3353 4.7115 22 7 1.3416 -4.7763 5.8676 23 6 0.7655 -5.4673 6.8642 24 7 0.4259 -5.1179 8.0955 25 6 -0.1248 -6.1658 8.7169 26 6 -0.1393 -7.2131 7.8666 27 7 0.4205 -6.7845 6.6918 28 6 0.6589 -7.4063 5.5063 29 6 1.6178 -5.1006 2.0029 30 6 1.1766 -4.7908 0.5628 31 1 0.1161 -4.5477 0.4967 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 -0.0016 34 1 1.5157 -3.9236 -2.1070 35 1 3.2626 -3.6186 -1.8308 36 1 3.5925 -5.8056 -0.9018 37 1 2.4411 -6.1539 -2.2302 38 1 1.7778 -8.0430 0.5860 39 1 3.2385 -7.0181 0.6709 40 1 2.0649 -4.7604 3.9268 41 1 -0.4962 -6.1727 9.7310 42 1 -0.5210 -8.2021 8.0727 43 1 0.3889 -8.4424 5.3653 44 1 2.5783 -4.6288 2.2096 45 1 0.8666 -4.7462 2.7088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026312866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = 105.840573 kcal Electronic energy + Delta-G solvation = -29387.078706 eV Core-core repulsion = 25407.048704 eV Total energy + Delta-G solvation = -3980.030002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.34755 -40.77811 -39.00489 -37.94746 -35.49235 -34.86861 -33.61468 -31.83664 -30.99098 -29.66844 -29.50672 -28.65717 -25.66792 -25.11704 -24.61016 -23.18859 -22.92537 -22.18956 -20.51908 -19.89602 -19.35348 -18.95137 -18.08408 -17.24262 -16.89211 -16.56698 -16.31494 -15.88849 -15.51177 -15.26758 -14.58057 -14.49532 -14.32905 -14.18823 -13.90888 -13.82163 -13.25077 -13.10089 -12.83395 -12.76004 -12.42053 -12.15392 -12.07132 -11.74249 -11.34493 -10.98700 -10.89608 -10.82688 -10.74788 -10.52452 -10.43402 -10.31275 -10.25080 -10.02558 -9.94888 -9.71568 -9.52814 -8.93602 -8.91660 -8.52683 -7.01320 -5.81913 -3.11276 -0.03865 0.49044 1.84920 2.14890 2.66446 2.72945 3.26540 3.31591 3.41727 3.47677 3.49906 3.84821 3.95314 4.14416 4.37207 4.47497 4.54177 4.57265 4.79752 4.86412 4.88013 5.02120 5.10281 5.21374 5.31693 5.34646 5.50792 5.53688 5.57538 5.67227 5.70871 5.79800 5.88273 5.93925 5.98463 6.06402 6.12098 6.13333 6.15879 6.31232 6.42139 6.54334 6.71564 6.94361 7.16190 7.23165 7.60747 7.66714 7.76527 8.36194 9.48056 10.03633 10.37262 11.40432 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010011 B = 0.003341 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.123177 B = 8378.525443 C =10804.771661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.184 3.816 11 H 0.059 0.941 12 C -0.144 4.144 13 C -0.116 4.116 14 C -0.100 4.100 15 H 0.086 0.914 16 C 0.113 3.887 17 N -0.607 5.607 18 C 0.595 3.405 19 O -0.540 6.540 20 C -0.219 4.219 21 C 0.186 3.814 22 N -0.429 5.429 23 C 0.387 3.613 24 N -0.469 5.469 25 C 0.052 3.948 26 C -0.097 4.097 27 N -0.403 5.403 28 C 0.184 3.816 29 C 0.092 3.908 30 C -0.106 4.106 31 H 0.093 0.907 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.200 0.800 41 H 0.191 0.809 42 H 0.191 0.809 43 H 0.189 0.811 44 H 0.086 0.914 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 -19.451 8.155 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.073 3.927 11 H 0.076 0.924 12 C -0.184 4.184 13 C -0.154 4.154 14 C -0.119 4.119 15 H 0.105 0.895 16 C -0.008 4.008 17 N -0.338 5.338 18 C 0.383 3.617 19 O -0.419 6.419 20 C -0.228 4.228 21 C -0.002 4.002 22 N -0.140 5.140 23 C 0.039 3.961 24 N -0.191 5.191 25 C -0.099 4.099 26 C -0.226 4.226 27 N -0.080 5.080 28 C 0.048 3.952 29 C -0.030 4.030 30 C -0.126 4.126 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.216 0.784 41 H 0.208 0.792 42 H 0.208 0.792 43 H 0.206 0.794 44 H 0.104 0.896 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.748 -18.331 9.024 20.507 hybrid contribution -0.321 -0.609 -0.520 0.862 sum 1.427 -18.940 8.505 20.811 Atomic orbital electron populations 1.69659 1.05127 1.25670 1.57402 1.24735 0.95475 0.97727 1.02716 0.86160 0.78845 0.84220 0.77210 1.20508 1.21928 1.21796 1.19248 0.91009 0.83991 1.43034 0.91068 1.42438 1.05697 0.99664 1.88199 1.21239 0.93447 0.85043 0.92964 0.92363 1.23149 1.01617 0.92878 1.00801 1.22324 0.97500 0.97772 0.97809 1.22577 0.99042 0.94789 0.95518 0.89524 1.22263 0.99506 0.98950 0.80126 1.48417 1.66666 1.08651 1.10079 1.16966 0.77113 0.85699 0.81929 1.90808 1.52786 1.13011 1.85297 1.20588 1.09281 0.96704 0.96253 1.24312 0.91722 0.90734 0.93473 1.67958 1.13228 1.33636 0.99160 1.22312 1.00699 0.78602 0.94511 1.70770 1.18605 1.28323 1.01378 1.22718 0.99063 0.87703 1.00410 1.22758 1.11555 1.03212 0.85105 1.44083 1.39563 1.13846 1.10536 1.22505 0.91617 0.99145 0.81901 1.22791 1.02031 0.78915 0.99282 1.22925 1.01902 0.95699 0.92052 0.88831 0.93500 0.78168 0.91651 0.91927 0.91742 0.91960 0.90211 0.90687 0.78352 0.79163 0.79239 0.79414 0.89642 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.02 13.06 55.49 0.72 -26.29 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.90 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.24 9.97 -15.06 -0.15 -6.39 16 8 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 9 N -0.72 -16.17 5.23 -51.71 -0.27 -16.44 16 10 C 0.18 3.07 3.03 -66.16 -0.20 2.87 16 11 H 0.06 0.98 7.15 -51.93 -0.37 0.61 16 12 C -0.14 -2.17 6.56 -25.02 -0.16 -2.34 16 13 C -0.12 -1.30 6.33 -25.42 -0.16 -1.46 16 14 C -0.10 -1.10 3.87 -88.53 -0.34 -1.45 16 15 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.11 1.19 6.59 -3.25 -0.02 1.17 16 17 N -0.61 -6.93 3.32 -172.80 -0.57 -7.50 16 18 C 0.60 7.24 7.73 -12.45 -0.10 7.14 16 19 O -0.54 -7.73 16.74 5.29 0.09 -7.64 16 20 C -0.22 -2.46 5.76 -104.87 -0.60 -3.07 16 21 C 0.19 2.27 9.29 -16.70 -0.16 2.12 16 22 N -0.43 -6.45 10.45 -13.37 -0.14 -6.59 16 23 C 0.39 5.65 8.91 -322.25 -2.87 2.78 16 24 N -0.47 -6.88 11.31 -14.41 -0.16 -7.04 16 25 C 0.05 0.51 11.82 -17.92 -0.21 0.30 16 26 C -0.10 -0.82 11.77 -16.42 -0.19 -1.02 16 27 N -0.40 -4.52 2.94 -63.77 -0.19 -4.70 16 28 C 0.18 1.83 10.65 -15.75 -0.17 1.66 16 29 C 0.09 1.09 4.58 -3.25 -0.01 1.07 16 30 C -0.11 -1.42 3.60 -88.53 -0.32 -1.73 16 31 H 0.09 1.37 7.80 -51.93 -0.40 0.97 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 33 H 0.38 9.32 7.59 -40.82 -0.31 9.01 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.66 7.25 -51.93 -0.38 0.29 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.84 7.87 -51.93 -0.41 0.44 16 39 H 0.08 0.73 7.19 -51.93 -0.37 0.35 16 40 H 0.20 2.16 4.41 -52.49 -0.23 1.93 16 41 H 0.19 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.19 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.19 1.36 7.80 -52.49 -0.41 0.95 16 44 H 0.09 0.96 6.39 -51.93 -0.33 0.63 16 45 H 0.08 1.00 6.03 -51.93 -0.31 0.69 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -33.64 364.15 -11.44 -45.08 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.61 Total: 7.65 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -5.77 Total: 1.30 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -0.61 Total: -68.57 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.09 Total: -7.64 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.64 -11.44 -45.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026312866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.920 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds