Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00078 * 2 1 4 4 H 1.48498 * 109.47566 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46934 * 299.99959 * 3 2 1 6 6 H 1.48499 * 109.47222 * 59.99823 * 3 2 1 7 7 C 1.38808 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00065 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00291 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64578 * 14.72137 * 9 7 2 11 11 C 1.54906 * 104.83309 * 155.82714 * 10 9 7 12 12 C 1.55157 * 101.58297 * 37.00139 * 11 10 9 13 13 C 1.47019 * 125.64750 * 194.66383 * 9 7 2 14 14 H 1.09001 * 109.88662 * 300.51950 * 13 9 7 15 15 C 1.53000 * 109.88675 * 61.69297 * 13 9 7 16 16 N 1.46501 * 109.47502 * 183.27761 * 15 13 9 17 17 C 1.34771 * 120.00079 * 184.89266 * 16 15 13 18 18 O 1.21518 * 119.99685 * 359.97438 * 17 16 15 19 19 C 1.48182 * 120.00225 * 179.97438 * 17 16 15 20 20 C 1.39115 * 119.69348 * 180.02562 * 19 17 16 21 21 C 1.39277 * 118.97685 * 179.97438 * 20 19 17 22 22 N 1.39961 * 120.82580 * 180.02562 * 21 20 19 23 23 C 1.37152 * 126.48540 * 180.02562 * 22 21 20 24 24 C 1.34625 * 106.83236 * 179.97438 * 23 22 21 25 25 N 1.34149 * 108.20957 * 359.97438 * 24 23 22 26 26 C 1.30492 * 109.36612 * 359.74586 * 25 24 23 27 27 C 1.39271 * 118.35333 * 359.97438 * 21 20 19 28 28 C 1.38339 * 119.28211 * 0.02562 * 27 21 20 29 29 N 1.31602 * 120.97303 * 359.72202 * 28 27 21 30 30 H 0.96991 * 120.00105 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.36657 * 36.98277 * 10 9 7 32 32 H 1.09000 * 110.45683 * 274.70710 * 10 9 7 33 33 H 1.09008 * 110.99847 * 278.93272 * 11 10 9 34 34 H 1.08995 * 111.00975 * 155.08519 * 11 10 9 35 35 H 1.09003 * 110.71187 * 82.86596 * 12 11 10 36 36 H 1.09004 * 110.72333 * 206.13418 * 12 11 10 37 37 H 1.09011 * 109.46327 * 303.27453 * 15 13 9 38 38 H 1.08995 * 109.47184 * 63.26672 * 15 13 9 39 39 H 0.97003 * 119.99411 * 4.88616 * 16 15 13 40 40 H 1.07999 * 120.51756 * 359.97438 * 20 19 17 41 41 H 1.08002 * 126.58403 * 359.97438 * 23 22 21 42 42 H 1.07998 * 125.89765 * 180.02562 * 24 23 22 43 43 H 1.07995 * 125.72324 * 180.26995 * 26 25 24 44 44 H 1.08007 * 120.36140 * 180.02562 * 27 21 20 45 45 H 1.07996 * 119.51410 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1075 -2.5531 -0.3022 11 6 -0.2464 -4.0220 -0.7738 12 6 0.7649 -4.7444 0.1551 13 6 1.8983 -3.7078 0.3047 14 1 2.7017 -3.9333 -0.3966 15 6 2.4342 -3.7259 1.7377 16 7 3.0722 -5.0175 2.0043 17 6 3.5316 -5.3000 3.2393 18 8 3.4170 -4.4832 4.1317 19 6 4.1764 -6.6066 3.5092 20 6 4.6478 -6.8917 4.7866 21 6 5.2509 -8.1245 5.0237 22 7 5.7384 -8.4520 6.2941 23 6 6.3497 -9.6253 6.6556 24 6 6.6574 -9.5183 7.9618 25 7 6.2484 -8.3151 8.3916 26 6 5.7017 -7.6647 7.4012 27 6 5.3559 -9.0239 3.9655 28 6 4.8628 -8.6675 2.7231 29 7 4.2934 -7.4966 2.5308 30 1 -0.4850 0.8400 0.0004 31 1 -0.4081 -1.8696 -1.0963 32 1 -0.7084 -2.3831 0.5913 33 1 0.0415 -4.1253 -1.8201 34 1 -1.2591 -4.3907 -0.6107 35 1 0.3120 -4.9629 1.1222 36 1 1.1355 -5.6563 -0.3132 37 1 3.1652 -2.9269 1.8622 38 1 1.6104 -3.5766 2.4356 39 1 3.1638 -5.6693 1.2918 40 1 4.5478 -6.1683 5.5822 41 1 6.5464 -10.4725 6.0152 42 1 7.1493 -10.2708 8.5602 43 1 5.2870 -6.6689 7.4533 44 1 5.8173 -9.9892 4.1132 45 1 4.9426 -9.3618 1.8998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028242221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = 99.218363 kcal Electronic energy + Delta-G solvation = -28298.399820 eV Core-core repulsion = 24318.082658 eV Total energy + Delta-G solvation = -3980.317162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -42.86047 -40.83107 -39.10141 -37.61691 -35.40334 -34.34635 -32.51723 -32.15493 -31.06795 -29.95266 -29.66369 -28.70741 -25.64086 -24.77485 -24.57502 -23.58447 -22.08043 -21.39226 -20.65944 -20.19708 -19.73854 -19.02672 -17.40085 -16.83332 -16.53690 -16.45761 -16.12433 -15.65666 -15.29933 -15.06546 -14.90003 -14.64417 -14.37191 -14.34436 -14.08275 -13.87720 -13.79501 -13.40490 -13.01199 -12.47456 -12.11120 -11.91037 -11.80201 -11.70952 -11.35259 -10.96184 -10.82336 -10.70684 -10.44187 -10.27392 -10.11539 -10.01279 -9.86831 -9.81250 -9.80601 -9.70781 -9.56999 -9.04810 -8.75322 -8.60497 -6.86399 -5.79106 -3.15896 0.03188 0.31081 1.72282 1.98727 2.58281 2.67772 3.08032 3.38431 3.44959 3.46717 3.50864 3.77000 4.00021 4.04685 4.17058 4.33193 4.44561 4.47238 4.80715 4.88747 4.95763 5.05213 5.17507 5.22012 5.31403 5.38753 5.49215 5.60538 5.73880 5.79814 5.85175 6.02414 6.10263 6.17309 6.23709 6.43769 6.49432 6.55841 6.61944 6.66283 6.75778 7.01473 7.19855 7.47586 7.49765 7.59282 7.69353 7.77539 8.22034 8.27408 9.15164 9.75641 10.42856 11.32925 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.002190 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.669278 B =12781.148538 C =13791.314063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.106 3.894 16 N -0.695 5.695 17 C 0.560 3.440 18 O -0.531 6.531 19 C 0.122 3.878 20 C -0.133 4.133 21 C 0.176 3.824 22 N -0.416 5.416 23 C -0.054 4.054 24 C -0.018 4.018 25 N -0.481 5.481 26 C 0.200 3.800 27 C -0.174 4.174 28 C 0.131 3.869 29 N -0.462 5.462 30 H 0.253 0.747 31 H 0.072 0.928 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.407 0.593 40 H 0.158 0.842 41 H 0.181 0.819 42 H 0.178 0.822 43 H 0.214 0.786 44 H 0.147 0.853 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.060 -23.323 6.733 26.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.019 4.019 16 N -0.345 5.345 17 C 0.342 3.658 18 O -0.407 6.407 19 C -0.017 4.017 20 C -0.156 4.156 21 C 0.075 3.925 22 N -0.096 5.096 23 C -0.183 4.183 24 C -0.163 4.163 25 N -0.198 5.198 26 C -0.081 4.081 27 C -0.196 4.196 28 C -0.029 4.029 29 N -0.175 5.175 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.243 0.757 40 H 0.175 0.825 41 H 0.198 0.802 42 H 0.195 0.805 43 H 0.231 0.769 44 H 0.165 0.835 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 9.624 -21.903 7.272 25.005 hybrid contribution 0.792 -0.068 -0.158 0.811 sum 10.416 -21.971 7.114 25.335 Atomic orbital electron populations 1.69945 1.05025 1.25246 1.55834 1.24925 0.95690 0.97904 1.01353 0.86073 0.78933 0.83654 0.77270 1.20362 1.21704 1.21579 1.19033 0.90431 0.82141 1.44647 0.90565 1.44496 1.06415 1.01003 1.79324 1.21457 0.84754 0.90195 0.98876 1.23010 0.97566 0.99582 0.98581 1.22612 0.97055 0.97028 0.99740 1.21133 0.94653 0.88155 0.91719 0.94311 1.22398 0.97382 0.82452 0.99681 1.46010 1.57928 1.19935 1.10623 1.17749 0.79385 0.84829 0.83793 1.90825 1.57240 1.47839 1.44795 1.21275 0.96520 0.94759 0.89149 1.21796 0.98707 0.95725 0.99362 1.17957 0.95965 0.94626 0.83999 1.43226 1.43792 1.14773 1.07818 1.22820 1.05487 0.91349 0.98662 1.22451 1.04859 0.96190 0.92786 1.70396 1.14434 1.06127 1.28813 1.25553 1.02883 0.99258 0.80409 1.22083 1.03669 1.00755 0.93091 1.22770 0.91716 0.92805 0.95600 1.67669 1.13723 1.02510 1.33557 0.93619 0.90951 0.95566 0.92269 0.92335 0.91870 0.92235 0.91052 0.91201 0.75716 0.82465 0.80193 0.80530 0.76929 0.83503 0.80850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.38 10.58 55.49 0.59 -25.79 16 2 C 0.00 -0.04 5.47 -17.43 -0.10 -0.13 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.32 9.74 -15.06 -0.15 -6.47 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.59 -14.35 3.13 -162.57 -0.51 -14.86 16 10 C 0.17 4.04 5.41 -2.53 -0.01 4.03 16 11 C -0.15 -2.68 7.08 -24.58 -0.17 -2.86 16 12 C -0.13 -2.08 6.14 -24.90 -0.15 -2.23 16 13 C 0.15 2.94 3.21 -66.95 -0.21 2.73 16 14 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 15 C 0.11 1.99 5.08 -4.04 -0.02 1.97 16 16 N -0.69 -10.54 5.33 -61.14 -0.33 -10.86 16 17 C 0.56 8.64 7.81 -12.18 -0.10 8.55 16 18 O -0.53 -9.93 16.32 5.35 0.09 -9.84 16 19 C 0.12 1.46 6.75 -83.05 -0.56 0.90 16 20 C -0.13 -1.38 9.06 -38.87 -0.35 -1.73 16 21 C 0.18 1.50 6.67 -83.38 -0.56 0.94 16 22 N -0.42 -3.55 2.99 -61.91 -0.18 -3.74 16 23 C -0.05 -0.38 10.89 -16.45 -0.18 -0.56 16 24 C -0.02 -0.15 11.85 -17.82 -0.21 -0.36 16 25 N -0.48 -5.21 11.24 -14.47 -0.16 -5.37 16 26 C 0.20 1.89 11.95 -89.60 -1.07 0.82 16 27 C -0.17 -1.09 9.55 -39.16 -0.37 -1.46 16 28 C 0.13 0.89 11.17 -17.61 -0.20 0.69 16 29 N -0.46 -4.70 9.54 -9.87 -0.09 -4.79 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 31 H 0.07 1.90 6.93 -51.93 -0.36 1.53 16 32 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 33 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.03 7.80 -51.93 -0.40 0.63 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.51 7.90 -51.92 -0.41 1.10 16 38 H 0.07 1.46 8.06 -51.93 -0.42 1.04 16 39 H 0.41 5.31 7.69 -40.82 -0.31 5.00 16 40 H 0.16 1.58 6.49 -52.49 -0.34 1.24 16 41 H 0.18 0.61 7.23 -52.49 -0.38 0.23 16 42 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 43 H 0.21 1.52 7.15 -52.49 -0.38 1.15 16 44 H 0.15 0.47 6.94 -52.48 -0.36 0.10 16 45 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -33.84 376.89 -10.23 -44.07 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.87 Total: 3.78 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -4.41 Total: 4.83 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: -0.69 Total: -65.42 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.84 -10.23 -44.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028242221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.287 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds