Wall clock time and date at job start Sat Apr 11 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48503 * 109.46902 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47418 * 119.99462 * 3 2 1 6 6 H 1.48501 * 109.47023 * 240.00019 * 3 2 1 7 7 C 1.38811 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99926 * 139.28664 * 7 2 1 9 9 N 1.36940 * 119.99948 * 319.29592 * 7 2 1 10 10 C 1.50164 * 120.53765 * 352.83126 * 9 7 2 11 11 C 1.46238 * 107.53002 * 109.56644 * 10 9 7 12 12 C 1.52527 * 114.27438 * 58.41187 * 11 10 9 13 13 C 1.50121 * 105.41433 * 270.58765 * 12 11 10 14 14 C 1.54845 * 110.81445 * 97.68551 * 13 12 11 15 15 H 1.08995 * 109.36083 * 81.20003 * 14 13 12 16 16 N 1.46494 * 109.36055 * 200.92705 * 14 13 12 17 17 C 1.34774 * 120.00234 * 204.99948 * 16 14 13 18 18 O 1.21544 * 120.00133 * 0.02562 * 17 16 14 19 19 C 1.47849 * 119.99895 * 179.97438 * 17 16 14 20 20 C 1.40597 * 120.28269 * 0.02562 * 19 17 16 21 21 N 1.30814 * 121.52268 * 179.97438 * 20 19 17 22 22 C 1.33760 * 121.79879 * 0.02562 * 21 20 19 23 23 N 1.33886 * 120.62166 * 180.02562 * 22 21 20 24 24 C 1.31327 * 119.84658 * 179.97438 * 23 22 21 25 25 C 1.39766 * 120.77914 * 359.97438 * 24 23 22 26 26 N 1.31306 * 120.54891 * 0.04008 * 25 24 23 27 27 C 1.33665 * 119.71008 * 359.96033 * 26 25 24 28 28 C 1.38905 * 120.27765 * 179.72330 * 19 17 16 29 29 C 1.43430 * 120.53636 * 172.55929 * 9 7 2 30 30 H 0.96994 * 120.00432 * 173.66593 * 1 2 3 31 31 H 1.08996 * 109.84977 * 229.08106 * 10 9 7 32 32 H 1.09006 * 109.84441 * 350.06652 * 10 9 7 33 33 H 1.09004 * 108.52288 * 179.64729 * 11 10 9 34 34 H 1.08994 * 108.52899 * 297.32549 * 11 10 9 35 35 H 1.08998 * 110.25086 * 29.56499 * 12 11 10 36 36 H 1.09002 * 110.24549 * 151.47223 * 12 11 10 37 37 H 1.08995 * 109.20809 * 218.02611 * 13 12 11 38 38 H 1.09000 * 109.20983 * 337.38837 * 13 12 11 39 39 H 0.97007 * 120.00234 * 24.99895 * 16 14 13 40 40 H 1.08000 * 119.23597 * 359.97438 * 20 19 17 41 41 H 1.08002 * 119.61410 * 180.02562 * 24 23 22 42 42 H 1.07994 * 119.72447 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.99755 * 0.02562 * 28 19 17 44 44 H 1.09001 * 108.15893 * 33.29946 * 29 9 7 45 45 H 1.09000 * 108.16547 * 149.86905 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6963 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 2.8942 -1.3155 -0.6095 9 7 1.5740 -2.2443 0.7744 10 6 0.4452 -2.0528 1.7460 11 6 -0.7127 -2.7781 1.2245 12 6 -0.4750 -4.2698 1.0131 13 6 0.0456 -4.3961 -0.3893 14 6 1.5913 -4.4892 -0.3961 15 1 1.8926 -5.5125 -0.1721 16 7 2.0946 -4.1134 -1.7195 17 6 3.2886 -4.5740 -2.1421 18 8 3.9477 -5.3016 -1.4254 19 6 3.7963 -4.1952 -3.4780 20 6 3.0387 -3.3544 -4.3121 21 7 3.4647 -3.0035 -5.4982 22 6 4.6397 -3.4253 -5.9784 23 7 5.0529 -3.0511 -7.1956 24 6 6.2095 -3.4739 -7.6518 25 6 7.0192 -4.3126 -6.8808 26 7 6.6364 -4.6941 -5.6841 27 6 5.4630 -4.2761 -5.1992 28 6 5.0287 -4.6619 -3.9171 29 6 2.1841 -3.5378 0.6659 30 1 -0.4850 -0.8348 -0.0927 31 1 0.7241 -2.4528 2.7209 32 1 0.2086 -0.9924 1.8341 33 1 -1.5413 -2.6549 1.9219 34 1 -0.9968 -2.3362 0.2695 35 1 0.2638 -4.6387 1.7245 36 1 -1.4098 -4.8198 1.1217 37 1 -0.3697 -5.2941 -0.8465 38 1 -0.2630 -3.5243 -0.9663 39 1 1.5685 -3.5331 -2.2917 40 1 2.0830 -2.9898 -3.9656 41 1 6.5394 -3.1694 -8.6341 42 1 7.9673 -4.6498 -7.2726 43 1 5.6335 -5.3054 -3.2953 44 1 3.2404 -3.3971 0.4369 45 1 2.1150 -4.0287 1.6366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034245213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:56 Heat of formation + Delta-G solvation = 89.497927 kcal Electronic energy + Delta-G solvation = -29819.182087 eV Core-core repulsion = 25838.443415 eV Total energy + Delta-G solvation = -3980.738672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.93175 -39.95547 -38.51756 -37.73831 -35.29583 -34.64145 -33.42104 -32.21536 -31.73761 -31.04140 -29.95043 -26.66569 -25.86147 -25.35756 -24.23737 -23.13578 -22.82658 -21.59035 -20.39091 -19.46612 -19.30553 -18.52034 -17.96087 -17.14965 -16.66259 -15.88466 -15.81868 -15.34475 -15.21347 -15.01741 -14.74635 -14.48485 -14.00852 -13.68126 -13.63211 -13.45712 -13.10130 -12.93831 -12.75653 -12.46046 -12.23048 -12.10989 -12.03422 -11.89016 -11.16337 -10.99241 -10.90491 -10.62497 -10.48279 -10.24415 -10.06609 -9.90089 -9.84702 -9.75630 -9.58421 -9.51254 -9.44984 -9.03124 -8.85369 -8.21298 -7.02739 -6.22768 -3.07523 -0.35469 -0.04718 1.47277 2.15752 3.11829 3.19313 3.26016 3.48931 3.56331 3.70062 3.71733 3.76690 3.79159 4.30111 4.37570 4.51629 4.56510 4.67705 4.72533 4.95116 5.08501 5.11428 5.24335 5.28565 5.34741 5.55415 5.62554 5.67143 5.86741 5.91013 5.93526 6.04658 6.18687 6.25942 6.30526 6.52576 6.60568 6.62339 6.62587 6.79062 6.84049 6.91983 7.12718 7.18385 7.20392 7.62319 7.72262 7.94744 8.35566 8.47542 9.01524 9.79325 10.24029 11.07423 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.003441 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.797741 B = 8134.708375 C = 9482.132134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.012 4.012 3 Si 1.033 2.967 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.356 4.356 8 H 0.063 0.937 9 N -0.586 5.586 10 C 0.129 3.871 11 C -0.136 4.136 12 C -0.110 4.110 13 C -0.112 4.112 14 C 0.113 3.887 15 H 0.079 0.921 16 N -0.691 5.691 17 C 0.560 3.440 18 O -0.541 6.541 19 C -0.168 4.168 20 C 0.198 3.802 21 N -0.455 5.455 22 C 0.271 3.729 23 N -0.417 5.417 24 C 0.109 3.891 25 C 0.070 3.930 26 N -0.405 5.405 27 C 0.018 3.982 28 C 0.034 3.966 29 C 0.153 3.847 30 H 0.274 0.726 31 H 0.024 0.976 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.400 0.600 40 H 0.178 0.822 41 H 0.184 0.816 42 H 0.182 0.818 43 H 0.166 0.834 44 H 0.042 0.958 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -10.464 -10.121 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.215 4.215 3 Si 0.863 3.137 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.483 4.483 8 H 0.081 0.919 9 N -0.307 5.307 10 C 0.005 3.995 11 C -0.175 4.175 12 C -0.148 4.148 13 C -0.151 4.151 14 C 0.006 3.994 15 H 0.097 0.903 16 N -0.340 5.340 17 C 0.345 3.655 18 O -0.419 6.419 19 C -0.175 4.175 20 C 0.021 3.979 21 N -0.164 5.164 22 C 0.031 3.969 23 N -0.132 5.132 24 C -0.070 4.070 25 C -0.107 4.107 26 N -0.120 5.120 27 C -0.108 4.108 28 C 0.006 3.994 29 C 0.022 3.978 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.235 0.765 40 H 0.195 0.805 41 H 0.201 0.799 42 H 0.199 0.801 43 H 0.183 0.817 44 H 0.060 0.940 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.231 -8.709 -9.927 14.602 hybrid contribution 0.532 -1.797 -0.142 1.879 sum 6.763 -10.506 -10.069 16.047 Atomic orbital electron populations 1.70878 1.07194 1.30655 1.45232 1.25365 0.95741 1.00548 0.99799 0.83997 0.75778 0.77607 0.76357 1.21270 1.22279 1.22225 1.19867 1.09334 0.92503 1.26634 0.91882 1.44370 1.38951 1.04961 1.42401 1.20604 0.86847 1.01612 0.90453 1.21097 0.99434 0.94522 1.02432 1.20940 0.99910 0.97492 0.96481 1.21680 0.93928 1.01322 0.98121 1.22904 0.93813 0.99663 0.83041 0.90301 1.45937 1.19316 1.49597 1.19176 1.17689 0.81983 0.80887 0.84956 1.90763 1.57130 1.37765 1.56274 1.21296 0.96858 1.01847 0.97523 1.23409 0.98574 0.88894 0.87071 1.67505 1.12600 1.22134 1.14155 1.20112 0.91825 0.93381 0.91565 1.68329 1.14309 1.19545 1.11018 1.24316 0.89259 0.92460 1.01006 1.24210 1.01075 0.94981 0.90469 1.68590 1.12245 1.18499 1.12663 1.20199 0.93743 0.99875 0.96970 1.21760 0.93129 0.92931 0.91610 1.20634 0.96269 0.86223 0.94679 0.91318 0.95749 0.88734 0.94129 0.91001 0.91695 0.92531 0.93454 0.90863 0.76481 0.80537 0.79932 0.80064 0.81689 0.93987 0.94196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.29 11.99 55.49 0.67 -23.62 16 2 C -0.01 -0.31 4.53 -17.43 -0.08 -0.38 16 3 Si 1.03 24.29 30.06 -169.99 -5.11 19.18 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.30 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.36 -9.03 9.46 -15.06 -0.14 -9.17 16 8 H 0.06 1.67 8.05 -52.48 -0.42 1.25 16 9 N -0.59 -13.15 2.62 -175.40 -0.46 -13.61 16 10 C 0.13 2.74 5.23 -5.21 -0.03 2.71 16 11 C -0.14 -2.49 4.96 -30.19 -0.15 -2.64 16 12 C -0.11 -1.70 5.76 -28.41 -0.16 -1.86 16 13 C -0.11 -1.74 5.23 -27.19 -0.14 -1.89 16 14 C 0.11 1.90 2.91 -66.22 -0.19 1.71 16 15 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 16 N -0.69 -11.05 5.04 -53.10 -0.27 -11.32 16 17 C 0.56 9.21 7.59 -12.33 -0.09 9.11 16 18 O -0.54 -10.28 16.05 5.33 0.09 -10.19 16 19 C -0.17 -2.44 5.89 -104.83 -0.62 -3.06 16 20 C 0.20 2.79 10.69 -17.10 -0.18 2.60 16 21 N -0.46 -7.13 10.39 -12.28 -0.13 -7.26 16 22 C 0.27 4.04 7.60 -157.60 -1.20 2.85 16 23 N -0.42 -5.53 10.55 -12.39 -0.13 -5.66 16 24 C 0.11 0.91 11.21 -17.20 -0.19 0.71 16 25 C 0.07 0.55 11.22 -17.21 -0.19 0.36 16 26 N -0.41 -4.83 10.46 -10.77 -0.11 -4.94 16 27 C 0.02 0.25 6.59 -84.78 -0.56 -0.30 16 28 C 0.03 0.47 9.68 -38.38 -0.37 0.10 16 29 C 0.15 3.03 4.75 -4.93 -0.02 3.00 16 30 H 0.27 7.13 4.95 -40.82 -0.20 6.92 16 31 H 0.02 0.49 8.13 -51.93 -0.42 0.06 16 32 H 0.09 2.31 5.61 -51.93 -0.29 2.02 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.48 4.64 -51.93 -0.24 1.24 16 35 H 0.06 1.00 6.28 -51.93 -0.33 0.68 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.27 6.58 -51.93 -0.34 0.93 16 39 H 0.40 5.96 6.47 -40.82 -0.26 5.69 16 40 H 0.18 2.14 6.38 -52.49 -0.33 1.80 16 41 H 0.18 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.17 2.20 7.70 -52.49 -0.40 1.80 16 44 H 0.04 0.93 7.81 -51.93 -0.41 0.52 16 45 H 0.04 0.75 6.89 -51.93 -0.36 0.39 16 LS Contribution 359.35 15.07 5.42 5.42 Total: -1.00 -32.43 359.35 -9.68 -42.12 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.32 Total: 6.04 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -4.33 Total: 3.85 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -0.43 Total: -66.41 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.11 Total: 19.18 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.43 -9.68 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034245213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.614 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds