Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00047 * 2 1 4 4 H 1.48507 * 109.47015 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47020 * 240.00323 * 3 2 1 6 6 H 1.48498 * 109.47168 * 120.00167 * 3 2 1 7 7 C 1.38810 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00170 * 146.66283 * 7 2 1 9 9 N 1.36937 * 120.00270 * 326.65873 * 7 2 1 10 10 C 1.46868 * 125.33599 * 346.20090 * 9 7 2 11 11 C 1.54467 * 106.66498 * 195.32939 * 10 9 7 12 12 C 1.53383 * 102.53587 * 332.27644 * 11 10 9 13 13 H 1.09001 * 105.70178 * 277.65989 * 12 11 10 14 14 C 1.49275 * 114.27628 * 161.96686 * 12 11 10 15 15 N 1.45264 * 114.71974 * 258.58504 * 14 12 11 16 16 C 1.34772 * 120.15117 * 143.67779 * 15 14 12 17 17 O 1.21565 * 119.99562 * 174.84969 * 16 15 14 18 18 C 1.47765 * 120.00249 * 354.84213 * 16 15 14 19 19 C 1.39636 * 121.07265 * 31.41532 * 18 16 15 20 20 C 1.38335 * 119.37632 * 179.97438 * 19 18 16 21 21 N 1.31727 * 121.54563 * 0.02562 * 20 19 18 22 22 C 1.32112 * 121.95096 * 359.97438 * 21 20 19 23 23 N 1.37941 * 133.81160 * 180.02562 * 22 21 20 24 24 H 0.97000 * 126.35478 * 359.97438 * 23 22 21 25 25 C 1.35984 * 107.28531 * 179.97438 * 23 22 21 26 26 N 1.30278 * 110.05691 * 359.97438 * 25 23 22 27 27 C 1.34651 * 109.66852 * 359.75234 * 26 25 23 28 28 C 1.46826 * 119.54117 * 323.91603 * 15 14 12 29 29 C 1.52964 * 107.40209 * 54.76830 * 28 15 14 30 30 C 1.48008 * 125.33977 * 165.89824 * 9 7 2 31 31 H 1.08997 * 110.22817 * 303.31254 * 30 9 7 32 32 H 0.97006 * 119.99925 * 174.08611 * 1 2 3 33 33 H 1.08997 * 110.02606 * 314.64047 * 10 9 7 34 34 H 1.09006 * 110.01756 * 75.98416 * 10 9 7 35 35 H 1.09000 * 110.79165 * 90.54174 * 11 10 9 36 36 H 1.08998 * 110.79476 * 214.01224 * 11 10 9 37 37 H 1.08997 * 108.44443 * 20.49004 * 14 12 11 38 38 H 1.09000 * 108.43975 * 137.79599 * 14 12 11 39 39 H 1.08003 * 120.31011 * 359.95011 * 19 18 16 40 40 H 1.08003 * 119.22545 * 179.97438 * 20 19 18 41 41 H 1.08005 * 124.96600 * 179.97438 * 25 23 22 42 42 H 1.08998 * 109.86868 * 295.29244 * 28 15 14 43 43 H 1.08993 * 109.92745 * 174.27564 * 28 15 14 44 44 H 1.09003 * 109.38258 * 178.38718 * 29 28 15 45 45 H 1.08997 * 109.38529 * 58.69992 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1038 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 2.9570 -1.2789 -0.5146 9 7 1.4946 -2.2908 0.6508 10 6 0.3860 -2.2582 1.6136 11 6 0.4117 -3.6078 2.3645 12 6 1.0437 -4.5507 1.3330 13 1 0.2313 -4.8513 0.6713 14 6 1.5826 -5.8180 1.9091 15 7 3.0241 -5.8398 2.0869 16 6 3.5655 -6.4635 3.1519 17 8 4.7733 -6.5614 3.2497 18 6 2.6911 -7.0283 4.2006 19 6 1.4234 -7.5254 3.8914 20 6 0.6342 -8.0468 4.9008 21 7 1.0498 -8.0857 6.1502 22 6 2.2382 -7.6313 6.5061 23 7 2.9091 -7.5515 7.7087 24 1 2.5794 -7.8468 8.5718 25 6 4.1186 -6.9819 7.4596 26 7 4.2315 -6.7100 6.1905 27 6 3.1125 -7.0891 5.5445 28 6 3.8852 -5.1735 1.1018 29 6 3.4105 -3.7240 0.9854 30 6 1.9629 -3.6856 0.4901 31 1 1.9073 -3.9835 -0.5569 32 1 -0.4850 -0.8356 -0.0866 33 1 0.5263 -1.4372 2.3167 34 1 -0.5616 -2.1409 1.0878 35 1 1.0312 -3.5413 3.2589 36 1 -0.5988 -3.9302 2.6156 37 1 1.1060 -5.9880 2.8745 38 1 1.3127 -6.6402 1.2462 39 1 1.0623 -7.5026 2.8738 40 1 -0.3461 -8.4302 4.6590 41 1 4.8748 -6.7840 8.2049 42 1 3.7969 -5.6710 0.1360 43 1 4.9218 -5.1980 1.4376 44 1 4.0481 -3.1900 0.2808 45 1 3.4715 -3.2438 1.9619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036728466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = 111.847699 kcal Electronic energy + Delta-G solvation = -30288.922157 eV Core-core repulsion = 26309.152644 eV Total energy + Delta-G solvation = -3979.769513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.71761 -40.53047 -38.65930 -38.16275 -35.54212 -34.09896 -32.87871 -32.55301 -31.08325 -30.09086 -29.55430 -28.30672 -25.81157 -24.46304 -23.90593 -23.28001 -22.95658 -21.85852 -20.49271 -20.30640 -18.87650 -18.32060 -17.91228 -17.54017 -16.99355 -16.18449 -15.94235 -15.52721 -15.35716 -15.14129 -14.60471 -14.49118 -14.27824 -13.81899 -13.59455 -13.21619 -13.14597 -13.07058 -12.95033 -12.81646 -12.36500 -11.88295 -11.70098 -11.44754 -11.37851 -11.12555 -10.96785 -10.63534 -10.48242 -10.40305 -10.16358 -9.99754 -9.93301 -9.74228 -9.56971 -9.37937 -9.05613 -8.85072 -8.54864 -8.27340 -6.94503 -6.10457 -3.09259 0.17566 0.83804 2.19577 2.47475 2.75535 2.99441 3.51693 3.57433 3.58815 3.74005 3.75875 4.07741 4.26265 4.45433 4.56274 4.62286 4.75547 4.80976 4.97924 5.07055 5.09976 5.20302 5.37102 5.42133 5.47041 5.51160 5.59075 5.67213 5.73059 5.78930 5.83331 5.91461 6.09413 6.15957 6.19408 6.28228 6.32535 6.53164 6.57979 6.73853 6.83574 6.93775 7.03862 7.10552 7.41083 7.46106 7.50402 7.81797 8.18484 8.50834 9.02391 9.83258 10.37526 11.20810 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016558 B = 0.003059 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.614708 B = 9150.300476 C = 9255.867422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.023 4.023 3 Si 1.055 2.945 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.339 4.339 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.144 3.856 11 C -0.125 4.125 12 C -0.109 4.109 13 H 0.068 0.932 14 C 0.106 3.894 15 N -0.592 5.592 16 C 0.557 3.443 17 O -0.514 6.514 18 C -0.027 4.027 19 C -0.166 4.166 20 C 0.133 3.867 21 N -0.470 5.470 22 C 0.233 3.767 23 N -0.589 5.589 24 H 0.430 0.570 25 C 0.278 3.722 26 N -0.468 5.468 27 C 0.052 3.948 28 C 0.113 3.887 29 C -0.136 4.136 30 C 0.172 3.828 31 H 0.042 0.958 32 H 0.268 0.732 33 H 0.040 0.960 34 H 0.029 0.971 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.166 0.834 40 H 0.174 0.826 41 H 0.228 0.772 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.337 -18.914 13.063 23.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.225 4.225 3 Si 0.885 3.115 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.466 4.466 8 H 0.084 0.916 9 N -0.321 5.321 10 C 0.019 3.981 11 C -0.163 4.163 12 C -0.129 4.129 13 H 0.086 0.914 14 C -0.017 4.017 15 N -0.325 5.325 16 C 0.344 3.656 17 O -0.389 6.389 18 C -0.040 4.040 19 C -0.188 4.188 20 C -0.033 4.033 21 N -0.183 5.183 22 C -0.004 4.004 23 N -0.204 5.204 24 H 0.270 0.730 25 C -0.010 4.010 26 N -0.187 5.187 27 C -0.071 4.071 28 C -0.009 4.009 29 C -0.176 4.176 30 C 0.065 3.935 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.183 0.817 40 H 0.191 0.809 41 H 0.244 0.756 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.063 -17.136 13.326 21.805 hybrid contribution -0.252 -1.709 0.120 1.732 sum 1.811 -18.845 13.445 23.221 Atomic orbital electron populations 1.70807 1.06892 1.30038 1.47178 1.25614 0.96162 1.00891 0.99837 0.83665 0.75106 0.76491 0.76246 1.21209 1.22018 1.22212 1.19648 1.03343 0.89360 1.34254 0.91601 1.44781 1.39256 1.01247 1.46808 1.21254 0.92031 0.93601 0.91248 1.22454 0.99306 0.96872 0.97708 1.20762 0.99271 0.94477 0.98356 0.91370 1.21299 0.80631 0.97642 1.02154 1.47563 1.07290 1.53697 1.23944 1.17944 0.87634 0.79112 0.80941 1.90810 1.13857 1.57536 1.76684 1.19599 0.94290 0.98802 0.91282 1.22811 0.93288 0.99752 1.02968 1.22559 0.99707 0.95469 0.85547 1.66193 1.13207 1.17496 1.21393 1.18941 0.92328 1.02062 0.87090 1.42910 1.15490 1.53211 1.08782 0.73018 1.25724 0.86647 0.93577 0.95022 1.70311 1.23141 1.21955 1.03256 1.19182 0.92477 1.02080 0.93381 1.21727 0.95087 0.93366 0.90704 1.22339 0.98997 0.93600 1.02698 1.20435 0.91414 0.86078 0.95537 0.94003 0.92053 0.94196 0.95382 0.92249 0.91528 0.88568 0.91793 0.81656 0.80867 0.75616 0.91380 0.89155 0.90973 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.19 12.95 55.49 0.72 -26.47 16 2 C -0.02 -0.64 5.07 -17.43 -0.09 -0.73 16 3 Si 1.06 25.49 30.03 -169.99 -5.10 20.39 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.34 -9.37 9.53 -15.06 -0.14 -9.52 16 8 H 0.07 1.83 7.79 -52.48 -0.41 1.42 16 9 N -0.60 -14.58 2.97 -163.99 -0.49 -15.06 16 10 C 0.14 3.29 5.55 -3.07 -0.02 3.27 16 11 C -0.13 -2.14 6.37 -25.76 -0.16 -2.30 16 12 C -0.11 -1.71 2.45 -92.87 -0.23 -1.94 16 13 H 0.07 1.00 8.05 -51.93 -0.42 0.59 16 14 C 0.11 1.32 4.37 -6.54 -0.03 1.29 16 15 N -0.59 -8.82 2.99 -177.78 -0.53 -9.36 16 16 C 0.56 9.11 7.48 -12.37 -0.09 9.02 16 17 O -0.51 -10.11 16.10 5.31 0.09 -10.03 16 18 C -0.03 -0.38 5.54 -104.45 -0.58 -0.96 16 19 C -0.17 -1.68 7.56 -39.02 -0.29 -1.97 16 20 C 0.13 1.21 11.14 -17.56 -0.20 1.01 16 21 N -0.47 -5.24 10.35 -12.30 -0.13 -5.37 16 22 C 0.23 2.76 8.46 -155.65 -1.32 1.45 16 23 N -0.59 -4.71 6.23 -13.21 -0.08 -4.79 16 24 H 0.43 1.81 8.96 -40.82 -0.37 1.44 16 25 C 0.28 2.37 12.97 -89.69 -1.16 1.21 16 26 N -0.47 -6.67 11.04 -11.88 -0.13 -6.80 16 27 C 0.05 0.75 6.85 -84.62 -0.58 0.17 16 28 C 0.11 1.76 6.42 -3.88 -0.02 1.74 16 29 C -0.14 -2.52 5.18 -26.72 -0.14 -2.66 16 30 C 0.17 3.37 3.41 -67.69 -0.23 3.14 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.27 8.01 6.21 -40.82 -0.25 7.76 16 33 H 0.04 1.01 8.13 -51.93 -0.42 0.59 16 34 H 0.03 0.69 6.42 -51.93 -0.33 0.36 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 1.08 3.92 -51.93 -0.20 0.87 16 38 H 0.06 0.63 7.58 -51.93 -0.39 0.23 16 39 H 0.17 1.27 4.88 -52.48 -0.26 1.02 16 40 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.23 0.69 8.06 -52.48 -0.42 0.27 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.48 7.02 -51.93 -0.36 1.11 16 44 H 0.07 1.39 7.90 -51.93 -0.41 0.98 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 356.03 15.07 5.37 5.37 Total: -1.00 -38.14 356.03 -11.17 -49.31 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.58 Total: 0.59 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -5.29 Total: 2.23 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -0.64 Total: -67.85 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.10 Total: 20.39 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.14 -11.17 -49.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036728466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.155 kcal (2) G-P(sol) polarization free energy of solvation -38.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds