Wall clock time and date at job start Sat Apr 11 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 120.00454 * 2 1 4 4 H 1.48502 * 109.47134 * 274.97422 * 3 2 1 5 5 H 1.48505 * 109.46573 * 34.96757 * 3 2 1 6 6 H 1.48497 * 109.47386 * 154.96810 * 3 2 1 7 7 C 1.38816 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99666 * 169.81165 * 7 2 1 9 9 N 1.36935 * 119.99752 * 349.81454 * 7 2 1 10 10 C 1.47818 * 125.94461 * 346.91232 * 9 7 2 11 11 C 1.55103 * 104.89047 * 201.55297 * 10 9 7 12 12 C 1.56115 * 101.12095 * 322.99658 * 11 10 9 13 13 H 1.08998 * 112.18498 * 158.26460 * 12 11 10 14 14 C 1.53111 * 106.65115 * 281.12448 * 12 11 10 15 15 N 1.46693 * 109.12155 * 160.07842 * 14 12 11 16 16 C 1.34777 * 120.97408 * 121.18943 * 15 14 12 17 17 O 1.21589 * 120.00498 * 355.20322 * 16 15 14 18 18 C 1.47504 * 119.99844 * 175.19783 * 16 15 14 19 19 C 1.36884 * 120.61103 * 134.42262 * 18 16 15 20 20 C 1.40131 * 119.26087 * 179.78108 * 19 18 16 21 21 N 1.31142 * 120.45824 * 0.50348 * 20 19 18 22 22 C 1.33705 * 121.18881 * 359.74963 * 21 20 19 23 23 C 1.39067 * 132.55372 * 180.02562 * 22 21 20 24 24 C 1.38500 * 107.66744 * 179.97438 * 23 22 21 25 25 N 1.31534 * 109.03802 * 0.02562 * 24 23 22 26 26 N 1.37295 * 120.63550 * 359.97438 * 22 21 20 27 27 C 1.46528 * 118.04529 * 301.17220 * 15 14 12 28 28 C 1.51786 * 110.13808 * 53.77095 * 27 15 14 29 29 C 1.46258 * 125.95974 * 166.96006 * 9 7 2 30 30 H 1.08993 * 104.68640 * 70.97925 * 29 9 7 31 31 H 0.97001 * 119.99686 * 359.97438 * 1 2 3 32 32 H 1.09002 * 110.33198 * 82.72013 * 10 9 7 33 33 H 1.08997 * 110.39405 * 320.42061 * 10 9 7 34 34 H 1.08997 * 111.09649 * 205.02677 * 11 10 9 35 35 H 1.08997 * 111.09771 * 80.97432 * 11 10 9 36 36 H 1.09003 * 109.52552 * 279.97530 * 14 12 11 37 37 H 1.09003 * 109.52807 * 40.18461 * 14 12 11 38 38 H 1.08002 * 120.36434 * 0.02562 * 19 18 16 39 39 H 1.08005 * 119.77195 * 180.25331 * 20 19 18 40 40 H 1.07993 * 126.16678 * 359.97438 * 23 22 21 41 41 H 1.07994 * 125.48216 * 180.02562 * 24 23 22 42 42 H 1.09004 * 109.35884 * 173.97146 * 27 15 14 43 43 H 1.08996 * 109.36198 * 293.56124 * 27 15 14 44 44 H 1.08998 * 108.36246 * 79.85141 * 28 27 15 45 45 H 1.08993 * 108.36349 * 196.95614 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3927 2.1071 -1.3948 5 1 1.5042 2.6200 0.8025 6 1 3.5964 1.4121 0.5924 7 6 2.0102 -1.2022 -0.0005 8 1 3.0775 -1.2095 -0.1660 9 7 1.3417 -2.3788 0.2086 10 6 -0.0419 -2.5131 0.7112 11 6 -0.1203 -3.9527 1.2830 12 6 0.7637 -4.7319 0.2590 13 1 1.1461 -5.6654 0.6720 14 6 -0.1047 -4.9685 -0.9796 15 7 0.7631 -5.2522 -2.1278 16 6 0.6543 -6.4093 -2.8103 17 8 -0.1106 -7.2726 -2.4255 18 6 1.4631 -6.6284 -4.0242 19 6 2.1208 -7.8129 -4.2192 20 6 2.8774 -7.9924 -5.3849 21 7 2.9639 -7.0337 -6.2756 22 6 2.3333 -5.8676 -6.1011 23 6 2.2607 -4.7130 -6.8728 24 6 1.4566 -3.8078 -6.2003 25 7 1.0461 -4.3518 -5.0753 26 7 1.5746 -5.6436 -4.9790 27 6 1.7513 -4.2405 -2.5111 28 6 2.6116 -3.8714 -1.3163 29 6 1.8723 -3.7215 -0.0253 30 1 2.6122 -3.8672 0.7616 31 1 -0.4850 0.8401 0.0004 32 1 -0.7547 -2.3897 -0.1042 33 1 -0.2333 -1.7822 1.4969 34 1 -1.1458 -4.3220 1.2768 35 1 0.3054 -4.0006 2.2852 36 1 -0.7661 -5.8170 -0.8041 37 1 -0.6991 -4.0779 -1.1833 38 1 2.0539 -8.6019 -3.4847 39 1 3.3964 -8.9253 -5.5492 40 1 2.7442 -4.5513 -7.8248 41 1 1.2069 -2.8150 -6.5443 42 1 2.3854 -4.6370 -3.3041 43 1 1.2360 -3.3512 -2.8738 44 1 3.3717 -4.6423 -1.1892 45 1 3.1163 -2.9303 -1.5342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036736337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:42 Heat of formation + Delta-G solvation = 119.694840 kcal Electronic energy + Delta-G solvation = -30880.470539 eV Core-core repulsion = 26901.041304 eV Total energy + Delta-G solvation = -3979.429236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.53232 -41.57077 -39.99912 -38.95209 -36.86835 -35.29781 -34.50990 -33.46787 -32.13318 -31.29482 -30.24365 -29.50789 -27.62168 -26.51456 -25.36513 -24.44749 -24.21519 -23.17099 -21.99095 -21.19225 -20.02022 -19.50664 -18.64569 -18.22424 -18.06981 -17.68806 -17.08493 -16.86428 -16.52268 -16.15923 -16.11291 -15.72036 -15.37325 -15.23958 -14.68564 -14.57525 -14.43301 -14.23894 -13.97035 -13.90857 -13.75038 -13.37904 -13.15009 -12.98610 -12.78615 -12.56679 -12.34413 -12.33135 -12.13899 -12.01824 -11.80062 -11.65852 -11.62301 -11.49240 -11.38383 -10.89015 -10.65586 -10.64388 -9.82213 -9.06785 -8.77555 -7.87286 -5.21335 -0.91458 -0.21254 0.68689 1.30368 1.44937 1.45869 1.54115 1.55088 1.66838 2.33059 2.48886 2.68582 2.88633 3.20695 3.31156 3.56190 3.64073 3.73530 3.85626 3.91213 3.94920 3.98396 4.08027 4.15899 4.31608 4.39069 4.40123 4.48598 4.50579 4.66242 4.70734 4.81409 4.83789 4.85335 4.95681 5.01292 5.07896 5.16923 5.30890 5.32697 5.37926 5.45233 5.47729 5.60191 5.73658 6.06429 6.22085 6.31227 6.48517 6.61372 7.09103 7.78416 8.47538 9.24865 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.004005 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.668233 B = 6990.130259 C = 8321.787597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.056 4.056 3 Si 0.968 3.032 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.608 5.608 10 C 0.179 3.821 11 C -0.127 4.127 12 C -0.092 4.092 13 H 0.110 0.890 14 C 0.125 3.875 15 N -0.576 5.576 16 C 0.564 3.436 17 O -0.545 6.545 18 C 0.117 3.883 19 C -0.142 4.142 20 C 0.193 3.807 21 N -0.465 5.465 22 C 0.232 3.768 23 C -0.256 4.256 24 C 0.084 3.916 25 N -0.338 5.338 26 N -0.315 5.315 27 C 0.148 3.852 28 C -0.131 4.131 29 C 0.166 3.834 30 H 0.008 0.992 31 H 0.246 0.754 32 H 0.002 0.998 33 H 0.023 0.977 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.204 0.796 39 H 0.242 0.758 40 H 0.186 0.814 41 H 0.224 0.776 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.272 -17.385 -9.795 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.250 4.250 3 Si 0.796 3.204 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.165 4.165 12 C -0.112 4.112 13 H 0.128 0.872 14 C 0.004 3.996 15 N -0.305 5.305 16 C 0.350 3.650 17 O -0.423 6.423 18 C 0.000 4.000 19 C -0.166 4.166 20 C 0.009 3.991 21 N -0.177 5.177 22 C 0.005 3.995 23 C -0.286 4.286 24 C -0.093 4.093 25 N -0.163 5.163 26 N -0.090 5.090 27 C 0.025 3.975 28 C -0.171 4.171 29 C 0.059 3.941 30 H 0.026 0.974 31 H 0.055 0.945 32 H 0.020 0.980 33 H 0.041 0.959 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.221 0.779 39 H 0.258 0.742 40 H 0.203 0.797 41 H 0.241 0.759 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.532 -17.194 -9.366 20.346 hybrid contribution 0.043 1.777 -0.041 1.778 sum 5.575 -15.417 -9.407 18.901 Atomic orbital electron populations 1.70139 1.06317 1.25300 1.57373 1.25568 0.96256 1.00746 1.02464 0.85234 0.78001 0.79908 0.77217 1.21523 1.22209 1.19439 1.19183 0.91305 0.83837 1.41930 0.90626 1.44781 1.13050 1.00483 1.74965 1.21241 0.85676 0.92860 0.94857 1.23141 1.00066 0.95171 0.98161 1.22297 0.95580 0.98195 0.95096 0.87215 1.21706 0.92319 1.01579 0.84037 1.47845 1.35912 1.16412 1.30293 1.17768 0.82351 0.82163 0.82728 1.90818 1.38907 1.43441 1.69176 1.20705 1.00182 0.89016 0.90065 1.22617 0.96729 0.95021 1.02278 1.24317 0.90905 0.98180 0.85731 1.68065 1.19814 0.98850 1.30928 1.21205 0.94456 0.95741 0.88063 1.21373 1.11279 0.91010 1.04947 1.24449 0.93592 1.01266 0.89996 1.78217 1.25598 0.89107 1.23368 1.47536 1.34097 1.11665 1.15667 1.21149 0.89714 0.90616 0.96044 1.21200 0.98611 1.01773 0.95478 1.19690 0.94507 0.85673 0.94205 0.97411 0.94463 0.97996 0.95866 0.89318 0.90588 0.88207 0.92400 0.77861 0.74204 0.79660 0.75937 0.90885 0.92934 0.90884 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.04 10.89 21.65 0.24 -55.80 16 2 C -0.06 -3.14 5.40 84.86 0.46 -2.68 16 3 Si 0.97 45.26 29.57 68.60 2.03 47.29 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.23 -12.67 9.32 84.03 0.78 -11.89 16 8 H 0.08 3.98 7.46 -2.91 -0.02 3.96 16 9 N -0.61 -29.95 3.32 -678.00 -2.25 -32.20 16 10 C 0.18 8.52 4.92 86.85 0.43 8.95 16 11 C -0.13 -4.42 6.46 32.40 0.21 -4.21 16 12 C -0.09 -3.05 3.69 -9.78 -0.04 -3.08 16 13 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 14 C 0.13 4.27 5.55 86.38 0.48 4.75 16 15 N -0.58 -19.24 2.94 -827.15 -2.44 -21.67 16 16 C 0.56 17.66 7.33 86.69 0.64 18.30 16 17 O -0.55 -18.60 16.43 -4.00 -0.07 -18.66 16 18 C 0.12 3.08 5.59 40.36 0.23 3.30 16 19 C -0.14 -2.31 9.70 22.41 0.22 -2.09 16 20 C 0.19 2.45 11.26 85.26 0.96 3.41 16 21 N -0.47 -9.52 10.44 -192.62 -2.01 -11.53 16 22 C 0.23 5.90 7.93 133.23 1.06 6.95 16 23 C -0.26 -5.81 10.91 22.53 0.25 -5.57 16 24 C 0.08 2.06 11.94 84.80 1.01 3.07 16 25 N -0.34 -10.66 9.52 -57.55 -0.55 -11.21 16 26 N -0.31 -9.02 2.81 -181.98 -0.51 -9.54 16 27 C 0.15 5.18 4.63 85.97 0.40 5.58 16 28 C -0.13 -4.71 5.62 29.08 0.16 -4.55 16 29 C 0.17 6.54 2.62 43.82 0.11 6.66 16 30 H 0.01 0.33 8.08 -2.39 -0.02 0.31 16 31 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 33 H 0.02 1.24 7.37 -2.39 -0.02 1.22 16 34 H 0.09 2.67 7.98 -2.39 -0.02 2.65 16 35 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.10 3.17 7.01 -2.39 -0.02 3.15 16 37 H 0.06 2.31 6.49 -2.39 -0.02 2.29 16 38 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.24 0.26 8.06 -2.91 -0.02 0.24 16 40 H 0.19 3.14 8.06 -2.91 -0.02 3.12 16 41 H 0.22 3.92 8.06 -2.91 -0.02 3.90 16 42 H 0.07 2.40 4.97 -2.38 -0.01 2.39 16 43 H 0.05 2.21 7.60 -2.39 -0.02 2.20 16 44 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.06 2.57 6.87 -2.39 -0.02 2.55 16 Total: -1.00 -75.09 355.76 2.82 -72.27 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 1.03 Total: 14.15 kcal Atomic # 6 Polarization: 19.55 SS G_CDS: 7.35 Total: 26.90 kcal Atomic # 7 Polarization: -134.43 SS G_CDS: -7.52 Total: -141.95 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.07 Total: -18.66 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -75.09 2.82 -72.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036736337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.970 kcal (2) G-P(sol) polarization free energy of solvation -75.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds