Wall clock time and date at job start Sat Apr 11 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00329 * 2 1 4 4 H 1.48497 * 109.47057 * 239.99838 * 3 2 1 5 5 H 1.48507 * 109.46830 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47476 * 119.99627 * 3 2 1 7 7 C 1.38811 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00083 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00249 * 0.02562 * 7 2 1 10 10 C 1.48164 * 126.40575 * 359.97098 * 9 7 2 11 11 C 1.55283 * 107.04413 * 184.93888 * 10 9 7 12 12 C 1.53740 * 101.84083 * 22.49107 * 11 10 9 13 13 H 1.08995 * 111.30908 * 78.94700 * 12 11 10 14 14 C 1.52670 * 114.67904 * 207.35951 * 12 11 10 15 15 N 1.47725 * 106.14107 * 169.72271 * 14 12 11 16 16 C 1.34776 * 119.69054 * 127.90425 * 15 14 12 17 17 O 1.21595 * 119.99515 * 354.32560 * 16 15 14 18 18 C 1.47504 * 120.00209 * 174.58955 * 16 15 14 19 19 C 1.36884 * 120.60733 * 128.74636 * 18 16 15 20 20 C 1.40139 * 119.25728 * 180.02562 * 19 18 16 21 21 N 1.31136 * 120.46038 * 359.97438 * 20 19 18 22 22 C 1.33700 * 121.18751 * 0.02630 * 21 20 19 23 23 C 1.39072 * 132.55499 * 179.97438 * 22 21 20 24 24 C 1.38507 * 107.66480 * 180.02562 * 23 22 21 25 25 N 1.31523 * 109.03831 * 359.97438 * 24 23 22 26 26 N 1.37291 * 120.63695 * 359.71570 * 22 21 20 27 27 C 1.46601 * 120.62344 * 307.63525 * 15 14 12 28 28 C 1.53950 * 110.58569 * 48.07416 * 27 15 14 29 29 C 1.45472 * 126.40615 * 179.97438 * 9 7 2 30 30 H 1.08999 * 108.78720 * 265.97252 * 29 9 7 31 31 H 0.96995 * 119.99560 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.91434 * 65.59204 * 10 9 7 33 33 H 1.08999 * 110.08876 * 304.38901 * 10 9 7 34 34 H 1.08998 * 110.96191 * 264.34907 * 11 10 9 35 35 H 1.09007 * 110.95291 * 140.62095 * 11 10 9 36 36 H 1.08998 * 110.22348 * 50.55868 * 14 12 11 37 37 H 1.09004 * 110.13329 * 288.83513 * 14 12 11 38 38 H 1.08006 * 120.37355 * 359.97438 * 19 18 16 39 39 H 1.08000 * 119.76762 * 180.02562 * 20 19 18 40 40 H 1.07999 * 126.16731 * 0.05683 * 23 22 21 41 41 H 1.08004 * 125.47690 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.25370 * 168.35944 * 27 15 14 43 43 H 1.09004 * 109.25389 * 287.78873 * 27 15 14 44 44 H 1.09001 * 109.88288 * 68.41040 * 28 27 15 45 45 H 1.09005 * 109.88257 * 189.49243 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1468 -2.5534 0.0006 11 6 -0.4341 -4.0740 0.1284 12 6 0.8682 -4.5889 0.7628 13 1 0.8916 -4.3917 1.8345 14 6 1.2017 -6.0438 0.4422 15 7 2.5821 -6.2636 0.9202 16 6 2.8483 -7.3023 1.7367 17 8 1.9401 -7.9916 2.1594 18 6 4.2407 -7.5994 2.1223 19 6 4.5806 -7.7583 3.4387 20 6 5.9122 -8.0394 3.7731 21 7 6.8236 -8.1500 2.8368 22 6 6.5117 -7.9984 1.5456 23 6 7.2694 -8.0625 0.3812 24 6 6.4204 -7.8223 -0.6865 25 7 5.2038 -7.6195 -0.2299 26 7 5.2208 -7.7272 1.1648 27 6 3.6663 -5.3660 0.5102 28 6 3.2475 -3.8952 0.6872 29 6 1.9078 -3.7212 0.0005 30 1 1.9819 -4.0719 -1.0288 31 1 -0.4849 0.8400 -0.0004 32 1 -0.5631 -2.1739 -0.9326 33 1 -0.5833 -2.0206 0.8454 34 1 -0.5951 -4.5241 -0.8512 35 1 -1.2857 -4.2561 0.7841 36 1 1.1465 -6.2149 -0.6329 37 1 0.5147 -6.7100 0.9639 38 1 3.8312 -7.6671 4.2111 39 1 6.1894 -8.1667 4.8091 40 1 8.3287 -8.2640 0.3203 41 1 6.7108 -7.8043 -1.7266 42 1 4.5475 -5.5648 1.1201 43 1 3.9066 -5.5478 -0.5374 44 1 3.1539 -3.6615 1.7478 45 1 3.9877 -3.2410 0.2265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036736338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:45 Heat of formation + Delta-G solvation = 114.901858 kcal Electronic energy + Delta-G solvation = -30360.920649 eV Core-core repulsion = 26381.283574 eV Total energy + Delta-G solvation = -3979.637075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.48913 -41.58077 -39.97841 -38.94001 -37.03562 -35.31202 -34.44206 -33.19582 -32.12196 -31.47029 -30.20693 -29.85730 -27.21272 -26.55967 -24.94445 -24.42858 -23.95227 -23.04708 -21.91640 -21.38151 -20.54681 -19.59967 -18.72843 -18.26913 -18.01314 -17.61164 -17.00487 -16.91189 -16.43493 -16.27966 -15.94270 -15.67963 -15.32024 -15.21479 -14.81153 -14.60744 -14.40548 -14.22955 -13.99829 -13.92965 -13.72050 -13.37191 -13.23328 -13.16462 -12.69029 -12.58266 -12.43426 -12.33376 -12.15802 -12.06714 -11.84981 -11.69898 -11.64279 -11.53180 -11.07812 -10.88923 -10.71732 -10.62424 -9.96362 -9.04978 -8.90194 -7.85083 -5.19926 -0.89548 -0.20995 0.64933 1.30766 1.44929 1.47251 1.48457 1.53623 1.68247 2.32837 2.48727 2.65631 2.89902 3.21217 3.32828 3.38669 3.62634 3.72318 3.86469 3.90300 3.95478 4.04861 4.08947 4.13224 4.27118 4.37427 4.41849 4.47166 4.58658 4.59922 4.62496 4.70881 4.78871 4.84106 4.90393 4.98202 5.03459 5.09552 5.25327 5.30820 5.45180 5.47690 5.49382 5.63688 5.75347 5.95288 6.18753 6.32989 6.49361 6.58639 7.07760 7.77194 8.45389 9.26331 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014853 B = 0.003282 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.626662 B = 8529.737123 C = 9350.746151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.066 4.066 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.234 4.234 8 H 0.084 0.916 9 N -0.615 5.615 10 C 0.182 3.818 11 C -0.120 4.120 12 C -0.107 4.107 13 H 0.070 0.930 14 C 0.135 3.865 15 N -0.582 5.582 16 C 0.564 3.436 17 O -0.545 6.545 18 C 0.122 3.878 19 C -0.152 4.152 20 C 0.192 3.808 21 N -0.468 5.468 22 C 0.230 3.770 23 C -0.257 4.257 24 C 0.091 3.909 25 N -0.334 5.334 26 N -0.313 5.313 27 C 0.140 3.860 28 C -0.120 4.120 29 C 0.160 3.840 30 H 0.021 0.979 31 H 0.246 0.754 32 H 0.005 0.995 33 H 0.019 0.981 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.198 0.802 39 H 0.237 0.763 40 H 0.184 0.816 41 H 0.233 0.767 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.708 -18.618 5.013 23.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.363 4.363 8 H 0.101 0.899 9 N -0.340 5.340 10 C 0.057 3.943 11 C -0.158 4.158 12 C -0.128 4.128 13 H 0.088 0.912 14 C 0.014 3.986 15 N -0.312 5.312 16 C 0.350 3.650 17 O -0.423 6.423 18 C 0.005 3.995 19 C -0.177 4.177 20 C 0.008 3.992 21 N -0.179 5.179 22 C 0.003 3.997 23 C -0.288 4.288 24 C -0.086 4.086 25 N -0.159 5.159 26 N -0.088 5.088 27 C 0.017 3.983 28 C -0.159 4.159 29 C 0.053 3.947 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.215 0.785 39 H 0.253 0.747 40 H 0.201 0.799 41 H 0.250 0.750 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.902 -18.642 4.727 22.617 hybrid contribution 0.069 1.434 -0.170 1.446 sum 11.971 -17.208 4.557 21.452 Atomic orbital electron populations 1.70149 1.06275 1.25246 1.58415 1.25595 0.96515 1.00861 1.02884 0.85226 0.77193 0.79183 0.78197 1.20355 1.22239 1.20344 1.19326 0.90894 0.83469 1.42619 0.89865 1.44480 1.02343 1.00643 1.86509 1.21310 0.83473 0.91700 0.97768 1.22589 0.96737 0.95404 1.01121 1.22556 0.96644 0.94002 0.99579 0.91188 1.21765 0.80822 0.95596 1.00418 1.48215 1.10666 1.26585 1.45712 1.17827 0.86896 0.81275 0.79038 1.90838 1.45710 1.50709 1.55031 1.20609 0.88415 1.01361 0.89123 1.22565 1.01114 1.00898 0.93112 1.24218 0.86479 0.87296 1.01237 1.68049 1.36322 1.15875 0.97666 1.21254 0.83494 1.01506 0.93448 1.21414 1.02170 1.17893 0.87318 1.24516 0.88554 0.93319 1.02228 1.78035 1.23426 1.31055 0.83421 1.47452 1.07635 1.46637 1.07052 1.21629 0.87480 0.87886 1.01312 1.21806 0.98187 0.95040 1.00891 1.20832 0.92734 0.85489 0.95673 0.96177 0.94496 0.97704 0.96241 0.90251 0.89884 0.89325 0.88154 0.78503 0.74715 0.79865 0.75038 0.91178 0.90014 0.92392 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.08 10.44 21.65 0.23 -56.85 16 2 C -0.07 -3.70 5.49 84.86 0.47 -3.24 16 3 Si 0.97 45.41 29.55 68.60 2.03 47.43 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.23 -12.82 9.88 84.03 0.83 -11.99 16 8 H 0.08 4.32 7.21 -2.91 -0.02 4.30 16 9 N -0.62 -30.86 3.35 -669.79 -2.24 -33.11 16 10 C 0.18 8.89 5.45 86.84 0.47 9.37 16 11 C -0.12 -4.25 6.54 31.63 0.21 -4.04 16 12 C -0.11 -3.64 2.87 -9.83 -0.03 -3.67 16 13 H 0.07 2.56 8.12 -2.39 -0.02 2.54 16 14 C 0.14 3.86 6.00 86.03 0.52 4.37 16 15 N -0.58 -16.62 2.99 -820.98 -2.46 -19.08 16 16 C 0.56 16.07 7.24 86.69 0.63 16.70 16 17 O -0.55 -17.74 16.41 -4.01 -0.07 -17.81 16 18 C 0.12 2.93 5.20 40.36 0.21 3.14 16 19 C -0.15 -2.44 9.75 22.41 0.22 -2.22 16 20 C 0.19 2.41 11.26 85.26 0.96 3.37 16 21 N -0.47 -9.01 10.44 -192.62 -2.01 -11.02 16 22 C 0.23 5.18 7.93 133.23 1.06 6.24 16 23 C -0.26 -4.79 10.91 22.53 0.25 -4.55 16 24 C 0.09 1.63 11.94 84.80 1.01 2.64 16 25 N -0.33 -8.26 10.32 -57.54 -0.59 -8.86 16 26 N -0.31 -7.75 2.92 -181.99 -0.53 -8.28 16 27 C 0.14 3.96 4.71 86.68 0.41 4.37 16 28 C -0.12 -4.09 5.48 30.44 0.17 -3.92 16 29 C 0.16 6.27 2.55 45.53 0.12 6.38 16 30 H 0.02 0.83 7.94 -2.39 -0.02 0.81 16 31 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.00 0.26 7.77 -2.38 -0.02 0.24 16 33 H 0.02 1.07 7.21 -2.39 -0.02 1.05 16 34 H 0.08 2.52 8.11 -2.39 -0.02 2.50 16 35 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 36 H 0.09 2.36 8.08 -2.39 -0.02 2.34 16 37 H 0.10 2.80 6.98 -2.38 -0.02 2.79 16 38 H 0.20 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.24 0.43 8.06 -2.91 -0.02 0.41 16 40 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 41 H 0.23 2.18 8.06 -2.91 -0.02 2.15 16 42 H 0.07 1.91 5.62 -2.39 -0.01 1.90 16 43 H 0.08 2.33 7.48 -2.39 -0.02 2.31 16 44 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 45 H 0.07 2.54 7.62 -2.38 -0.02 2.52 16 Total: -1.00 -75.55 359.91 2.85 -72.69 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.02 Total: 11.92 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 7.49 Total: 22.96 kcal Atomic # 7 Polarization: -129.58 SS G_CDS: -7.61 Total: -137.19 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.07 Total: -17.81 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -75.55 2.85 -72.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036736338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.594 kcal (2) G-P(sol) polarization free energy of solvation -75.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds