Wall clock time and date at job start Sat Apr 11 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00153 * 2 1 4 4 H 1.48500 * 109.47205 * 240.00512 * 3 2 1 5 5 H 1.48500 * 109.46940 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47078 * 120.00302 * 3 2 1 7 7 C 1.38818 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99715 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.48156 * 126.40504 * 0.02562 * 9 7 2 11 11 C 1.55294 * 107.04295 * 175.08043 * 10 9 7 12 12 C 1.53750 * 101.83885 * 337.52069 * 11 10 9 13 13 H 1.09001 * 111.30773 * 280.14746 * 12 11 10 14 14 C 1.52243 * 114.73644 * 152.75049 * 12 11 10 15 15 N 1.47713 * 106.36398 * 190.42764 * 14 12 11 16 16 C 1.34778 * 119.68283 * 232.03448 * 15 14 12 17 17 O 1.21686 * 120.00053 * 355.81581 * 16 15 14 18 18 C 1.46815 * 120.00102 * 175.81030 * 16 15 14 19 19 C 1.40420 * 126.53898 * 49.62695 * 18 16 15 20 20 N 1.30972 * 108.76662 * 179.81685 * 19 18 16 21 21 N 1.39714 * 109.48561 * 0.45360 * 20 19 18 22 22 C 1.36352 * 133.19201 * 179.68910 * 21 20 19 23 23 C 1.35289 * 119.81336 * 179.97438 * 22 21 20 24 24 N 1.33251 * 121.26628 * 0.04078 * 23 22 21 25 25 C 1.31405 * 121.08457 * 359.97438 * 24 23 22 26 26 C 1.36821 * 107.96799 * 359.71139 * 21 20 19 27 27 C 1.46595 * 120.63424 * 52.06406 * 15 14 12 28 28 C 1.53961 * 110.57280 * 312.16897 * 27 15 14 29 29 C 1.45462 * 126.40424 * 179.71608 * 9 7 2 30 30 H 1.09000 * 109.26524 * 93.79652 * 29 9 7 31 31 H 0.96998 * 120.00252 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.92010 * 294.42167 * 10 9 7 33 33 H 1.09000 * 109.92011 * 55.73108 * 10 9 7 34 34 H 1.08996 * 110.95306 * 95.65734 * 11 10 9 35 35 H 1.09000 * 110.95234 * 219.38219 * 11 10 9 36 36 H 1.08999 * 110.07238 * 309.64510 * 14 12 11 37 37 H 1.09001 * 110.06757 * 71.21580 * 14 12 11 38 38 H 1.08004 * 125.61011 * 359.97438 * 19 18 16 39 39 H 1.08007 * 120.08815 * 359.97438 * 22 21 20 40 40 H 1.07996 * 119.36748 * 180.02562 * 23 22 21 41 41 H 1.07995 * 120.18361 * 180.02562 * 25 24 23 42 42 H 1.08994 * 109.26136 * 72.45506 * 27 15 14 43 43 H 1.09004 * 109.25613 * 191.92566 * 27 15 14 44 44 H 1.08998 * 109.87813 * 170.51746 * 28 27 15 45 45 H 1.08998 * 109.87839 * 291.52387 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1468 -2.5534 -0.0028 11 6 -0.4340 -4.0741 -0.1310 12 6 0.8690 -4.5889 -0.7643 13 1 0.8866 -4.4058 -1.8387 14 6 1.2013 -6.0404 -0.4474 15 7 2.5832 -6.2636 -0.9190 16 6 2.8504 -7.3027 -1.7347 17 8 1.9718 -8.0954 -2.0181 18 6 4.2016 -7.4781 -2.2815 19 6 5.4052 -7.4574 -1.5585 20 7 6.3990 -7.6531 -2.3889 21 7 5.9005 -7.7998 -3.6858 22 6 6.4936 -8.0131 -4.8950 23 6 5.7324 -8.1156 -6.0087 24 7 4.4052 -8.0112 -5.9514 25 6 3.7896 -7.8053 -4.8089 26 6 4.5377 -7.6927 -3.6289 27 6 3.6669 -5.3661 -0.5078 28 6 3.2482 -3.8952 -0.6860 29 6 1.9077 -3.7211 -0.0081 30 1 1.9933 -4.0812 1.0172 31 1 -0.4850 0.8400 0.0004 32 1 -0.5639 -2.1741 0.9301 33 1 -0.5796 -2.0210 -0.8498 34 1 -0.5958 -4.5242 0.8484 35 1 -1.2850 -4.2561 -0.7875 36 1 1.1404 -6.2121 0.6273 37 1 0.5149 -6.7045 -0.9727 38 1 5.4962 -7.3075 -0.4928 39 1 7.5680 -8.1000 -4.9633 40 1 6.2096 -8.2849 -6.9626 41 1 2.7132 -7.7235 -4.7791 42 1 3.9058 -5.5474 0.5401 43 1 4.5488 -5.5646 -1.1169 44 1 3.9878 -3.2409 -0.2247 45 1 3.1573 -3.6618 -1.7468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036738626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:55 Heat of formation + Delta-G solvation = 129.356072 kcal Electronic energy + Delta-G solvation = -29909.294398 eV Core-core repulsion = 25930.284105 eV Total energy + Delta-G solvation = -3979.010293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.85419 -40.17508 -38.70967 -38.05787 -35.37962 -34.03599 -32.70218 -31.73798 -31.58963 -30.31221 -29.18693 -28.00834 -25.29660 -25.05281 -24.41344 -23.43239 -22.41632 -22.18736 -20.19045 -19.92007 -19.26636 -18.39826 -17.78998 -17.08499 -16.47492 -16.29794 -16.04744 -15.59599 -15.32738 -15.04934 -14.91313 -14.44232 -14.00097 -13.93971 -13.68216 -13.37522 -13.33511 -13.07486 -12.93880 -12.56418 -12.41801 -11.68054 -11.55670 -11.51586 -11.42103 -11.22027 -10.83753 -10.80861 -10.71269 -10.38282 -10.21987 -10.16275 -10.11849 -9.91036 -9.77197 -9.63841 -9.49827 -8.63381 -8.55307 -8.19045 -6.84955 -5.72822 -3.06006 0.03443 0.47130 1.54494 1.88926 2.69160 2.95985 3.22445 3.38639 3.43108 3.44466 3.68040 3.80156 3.87197 4.38538 4.47490 4.55489 4.63755 4.83527 4.99026 5.03993 5.07688 5.10824 5.26805 5.33369 5.52526 5.55853 5.60237 5.69208 5.78700 5.81670 5.88853 6.02274 6.07007 6.14935 6.17370 6.23383 6.35704 6.48708 6.60866 6.63245 6.82467 6.89643 7.05362 7.19610 7.45567 7.54054 7.60810 7.79860 8.19801 8.23344 9.18139 9.81747 10.49844 11.39609 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014631 B = 0.003020 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.279873 B = 9269.351216 C =10045.518860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.079 0.921 14 C 0.128 3.872 15 N -0.597 5.597 16 C 0.593 3.407 17 O -0.544 6.544 18 C -0.259 4.259 19 C 0.112 3.888 20 N -0.301 5.301 21 N -0.250 5.250 22 C 0.066 3.934 23 C 0.025 3.975 24 N -0.444 5.444 25 C 0.168 3.832 26 C 0.084 3.916 27 C 0.106 3.894 28 C -0.129 4.129 29 C 0.169 3.831 30 H 0.019 0.981 31 H 0.253 0.747 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.206 0.794 39 H 0.182 0.818 40 H 0.186 0.814 41 H 0.189 0.811 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.868 -17.019 -6.762 21.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.144 4.144 13 H 0.098 0.902 14 C 0.007 3.993 15 N -0.329 5.329 16 C 0.381 3.619 17 O -0.422 6.422 18 C -0.278 4.278 19 C -0.066 4.066 20 N -0.124 5.124 21 N -0.018 5.018 22 C -0.063 4.063 23 C -0.116 4.116 24 N -0.155 5.155 25 C -0.012 4.012 26 C -0.038 4.038 27 C -0.017 4.017 28 C -0.169 4.169 29 C 0.060 3.940 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.222 0.778 39 H 0.199 0.801 40 H 0.203 0.797 41 H 0.206 0.794 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.383 -17.359 -7.748 22.157 hybrid contribution 0.349 1.231 0.901 1.565 sum 11.731 -16.128 -6.847 21.086 Atomic orbital electron populations 1.69921 1.04879 1.25167 1.56870 1.24785 0.95667 0.97603 1.02301 0.86245 0.78502 0.83431 0.77845 1.21248 1.21610 1.21195 1.18940 0.90301 0.82344 1.43924 0.90480 1.44194 1.01670 0.99431 1.86571 1.21532 0.83889 0.88331 1.00954 1.22717 0.95735 0.99636 0.99361 1.22579 0.97868 0.93293 1.00680 0.90242 1.21659 0.81157 0.97122 0.99384 1.48160 1.09965 1.26987 1.47775 1.17015 0.85809 0.80901 0.78216 1.90792 1.47418 1.43503 1.60483 1.19782 0.95294 1.21615 0.91066 1.24241 0.88420 0.93559 1.00379 1.77689 1.21152 1.29395 0.84201 1.46148 1.05634 1.42812 1.07160 1.22645 1.01701 1.00867 0.81083 1.22431 0.89398 1.01810 0.97999 1.68244 1.10329 1.09731 1.27154 1.23143 1.01473 0.92626 0.83984 1.20293 0.84970 1.01923 0.96614 1.21974 0.89238 0.90524 0.99987 1.21838 0.99510 0.93460 1.02046 1.20488 0.91039 0.87255 0.95208 0.96388 0.93692 0.94336 0.92774 0.92273 0.92003 0.91130 0.89046 0.77768 0.80103 0.79676 0.79369 0.91396 0.90134 0.90539 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.64 10.44 55.49 0.58 -26.06 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.07 9.88 -15.06 -0.15 -6.22 16 8 H 0.08 1.97 7.21 -52.48 -0.38 1.59 16 9 N -0.59 -14.49 3.35 -163.46 -0.55 -15.04 16 10 C 0.18 4.17 5.45 -1.91 -0.01 4.16 16 11 C -0.14 -2.43 6.54 -25.12 -0.16 -2.60 16 12 C -0.12 -2.12 2.85 -89.53 -0.26 -2.37 16 13 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 14 C 0.13 1.86 5.94 -3.76 -0.02 1.84 16 15 N -0.60 -8.24 3.00 -173.98 -0.52 -8.76 16 16 C 0.59 8.51 7.53 -12.79 -0.10 8.41 16 17 O -0.54 -9.22 16.48 5.20 0.09 -9.14 16 18 C -0.26 -3.25 5.08 -104.75 -0.53 -3.78 16 19 C 0.11 1.19 9.56 -17.10 -0.16 1.03 16 20 N -0.30 -3.44 12.60 30.76 0.39 -3.06 16 21 N -0.25 -2.73 3.91 -10.50 -0.04 -2.77 16 22 C 0.07 0.49 11.24 -16.59 -0.19 0.31 16 23 C 0.03 0.18 11.07 -17.99 -0.20 -0.02 16 24 N -0.44 -4.50 10.44 -13.26 -0.14 -4.64 16 25 C 0.17 1.86 11.31 -17.01 -0.19 1.66 16 26 C 0.08 1.02 6.81 -84.06 -0.57 0.44 16 27 C 0.11 1.33 5.59 -3.49 -0.02 1.32 16 28 C -0.13 -2.12 5.48 -27.12 -0.15 -2.26 16 29 C 0.17 3.24 2.55 -68.30 -0.17 3.06 16 30 H 0.02 0.36 7.89 -51.93 -0.41 -0.05 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.04 1.00 7.77 -51.93 -0.40 0.59 16 33 H 0.05 1.43 7.21 -51.93 -0.37 1.05 16 34 H 0.06 0.98 8.11 -51.93 -0.42 0.55 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 37 H 0.09 1.35 7.02 -51.93 -0.36 0.98 16 38 H 0.21 1.52 7.60 -52.48 -0.40 1.12 16 39 H 0.18 0.72 8.06 -52.48 -0.42 0.29 16 40 H 0.19 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.19 1.93 8.06 -52.49 -0.42 1.51 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.90 4.69 -51.93 -0.24 0.66 16 44 H 0.08 1.27 7.62 -51.93 -0.40 0.87 16 45 H 0.07 1.18 8.13 -51.93 -0.42 0.75 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -33.79 361.75 -8.66 -42.45 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.90 Total: 0.18 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -2.98 Total: 4.68 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.28 Total: -60.32 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.79 -8.66 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036738626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.802 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds