Wall clock time and date at job start Sat Apr 11 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99932 * 2 1 4 4 H 1.48495 * 109.47102 * 268.84816 * 3 2 1 5 5 H 1.48503 * 109.47284 * 28.85007 * 3 2 1 6 6 H 1.48497 * 109.47190 * 148.85037 * 3 2 1 7 7 C 1.38807 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00378 * 171.78735 * 7 2 1 9 9 N 1.36937 * 119.99696 * 351.78715 * 7 2 1 10 10 C 1.48259 * 126.39628 * 352.48152 * 9 7 2 11 11 C 1.55288 * 106.99693 * 184.93865 * 10 9 7 12 12 C 1.53741 * 101.87382 * 22.48762 * 11 10 9 13 13 H 1.08999 * 111.30692 * 79.82851 * 12 11 10 14 14 C 1.52241 * 114.74385 * 207.22160 * 12 11 10 15 15 N 1.47707 * 106.36667 * 169.57749 * 14 12 11 16 16 C 1.34783 * 119.68638 * 127.94312 * 15 14 12 17 17 O 1.21445 * 120.00292 * 176.85000 * 16 15 14 18 18 C 1.48635 * 119.99675 * 356.84538 * 16 15 14 19 19 N 1.33519 * 120.60184 * 44.03700 * 18 16 15 20 20 C 1.30811 * 122.65355 * 179.74076 * 19 18 16 21 21 N 1.34048 * 123.37728 * 0.55411 * 20 19 18 22 22 H 0.97006 * 120.21410 * 179.74579 * 21 20 19 23 23 C 1.36861 * 119.57966 * 359.73116 * 21 20 19 24 24 N 1.31641 * 135.96709 * 179.97438 * 23 21 20 25 25 C 1.33518 * 110.83411 * 179.97438 * 24 23 21 26 26 C 1.36075 * 110.93374 * 0.02562 * 25 24 23 27 27 C 1.39534 * 120.60897 * 224.31189 * 18 16 15 28 28 C 1.46599 * 120.63533 * 307.96309 * 15 14 12 29 29 C 1.53947 * 110.57276 * 47.80304 * 28 15 14 30 30 C 1.45464 * 126.40868 * 172.50373 * 9 7 2 31 31 H 1.09006 * 108.77881 * 265.96453 * 30 9 7 32 32 H 0.97003 * 120.00213 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.95106 * 65.59625 * 10 9 7 34 34 H 1.08999 * 109.93200 * 304.26663 * 10 9 7 35 35 H 1.09005 * 110.95413 * 264.33151 * 11 10 9 36 36 H 1.08998 * 110.95178 * 140.64563 * 11 10 9 37 37 H 1.09002 * 110.07027 * 288.79689 * 14 12 11 38 38 H 1.09003 * 110.07036 * 50.36520 * 14 12 11 39 39 H 1.07996 * 118.30418 * 180.27900 * 20 19 18 40 40 H 1.08008 * 124.53482 * 179.97438 * 25 24 23 41 41 H 1.08003 * 126.72400 * 180.02562 * 26 25 24 42 42 H 1.09003 * 109.25930 * 168.08889 * 28 15 14 43 43 H 1.09000 * 109.25260 * 287.52069 * 28 15 14 44 44 H 1.09001 * 109.88561 * 68.40886 * 29 28 15 45 45 H 1.09008 * 109.87985 * 189.48453 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5220 2.0324 -1.3997 5 1 1.4357 2.6597 0.6756 6 1 3.5353 1.4474 0.7242 7 6 2.0103 -1.2021 0.0005 8 1 3.0820 -1.2069 -0.1331 9 7 1.3362 -2.3818 0.1705 10 6 -0.0970 -2.5339 0.5184 11 6 -0.3562 -4.0515 0.7214 12 6 1.0551 -4.5743 1.0352 13 1 1.3255 -4.3854 2.0741 14 6 1.2931 -6.0305 0.6602 15 7 2.7454 -6.2633 0.7964 16 6 3.1889 -7.2998 1.5349 17 8 4.3792 -7.5308 1.6042 18 6 2.2212 -8.1602 2.2647 19 7 1.0985 -8.5742 1.6723 20 6 0.2221 -9.3358 2.2747 21 7 0.3600 -9.7618 3.5382 22 1 -0.3209 -10.3229 3.9413 23 6 1.4679 -9.4004 4.2558 24 7 1.9217 -9.6216 5.4716 25 6 3.0941 -9.0109 5.6593 26 6 3.4766 -8.3382 4.5400 27 6 2.4666 -8.5453 3.5832 28 6 3.7091 -5.3774 0.1363 29 6 3.3543 -3.9022 0.3966 30 6 1.8923 -3.7200 0.0438 31 1 1.7196 -4.0771 -0.9715 32 1 -0.4850 0.8400 0.0004 33 1 -0.7188 -2.1561 -0.2931 34 1 -0.3151 -1.9935 1.4395 35 1 -0.7466 -4.5055 -0.1895 36 1 -1.0310 -4.2229 1.5601 37 1 0.7442 -6.6856 1.3368 38 1 0.9808 -6.2076 -0.3690 39 1 -0.6601 -9.6331 1.7272 40 1 3.6624 -9.0453 6.5771 41 1 4.3791 -7.7590 4.4114 42 1 4.7077 -5.5807 0.5230 43 1 3.6945 -5.5667 -0.9371 44 1 3.5147 -3.6622 1.4477 45 1 3.9699 -3.2567 -0.2299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036760443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:06 Heat of formation + Delta-G solvation = 112.067376 kcal Electronic energy + Delta-G solvation = -30081.049363 eV Core-core repulsion = 26101.289376 eV Total energy + Delta-G solvation = -3979.759987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.22382 -40.22789 -38.93673 -38.36686 -35.51358 -35.27582 -32.61297 -31.89107 -30.78480 -29.66394 -29.26473 -28.14574 -26.12924 -24.76024 -23.95611 -23.29461 -22.45791 -21.34247 -20.33070 -20.04496 -19.37512 -18.72948 -18.03488 -17.16037 -16.83890 -16.34718 -16.09637 -15.77106 -15.17868 -14.91270 -14.78113 -14.45014 -13.91047 -13.72969 -13.38452 -13.25065 -13.22048 -13.09532 -12.57340 -12.55252 -12.46470 -11.96577 -11.68314 -11.52814 -11.38957 -10.93678 -10.85728 -10.76294 -10.66174 -10.33565 -10.15347 -10.08791 -9.92312 -9.80706 -9.63068 -9.42098 -8.89058 -8.65474 -8.58915 -8.14594 -6.83897 -5.74239 -3.07581 -0.49385 1.08035 1.85633 2.36013 2.71723 3.13313 3.15401 3.39026 3.45115 3.46453 3.56499 3.74645 4.18785 4.39698 4.48320 4.59404 4.93481 4.93949 5.20238 5.23134 5.29991 5.34440 5.48478 5.53951 5.62722 5.69438 5.80673 5.83885 5.96225 5.98295 6.06712 6.10456 6.14936 6.20830 6.30030 6.33885 6.40222 6.55172 6.59415 6.72587 6.78066 7.03287 7.11442 7.29861 7.44567 7.61833 7.66344 7.76439 7.97148 8.21895 9.16417 9.81092 10.49033 11.38381 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017829 B = 0.002941 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.124963 B = 9516.687729 C = 9846.461856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.175 3.825 11 C -0.133 4.133 12 C -0.129 4.129 13 H 0.077 0.923 14 C 0.119 3.881 15 N -0.584 5.584 16 C 0.566 3.434 17 O -0.523 6.523 18 C 0.210 3.790 19 N -0.510 5.510 20 C 0.350 3.650 21 N -0.520 5.520 22 H 0.428 0.572 23 C 0.256 3.744 24 N -0.517 5.517 25 C 0.063 3.937 26 C -0.200 4.200 27 C -0.160 4.160 28 C 0.116 3.884 29 C -0.129 4.129 30 C 0.168 3.832 31 H 0.022 0.978 32 H 0.252 0.748 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.223 0.777 40 H 0.168 0.832 41 H 0.147 0.853 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.293 -20.928 4.375 21.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.051 3.949 11 C -0.172 4.172 12 C -0.150 4.150 13 H 0.095 0.905 14 C -0.003 4.003 15 N -0.315 5.315 16 C 0.351 3.649 17 O -0.398 6.398 18 C 0.076 3.924 19 N -0.231 5.231 20 C 0.067 3.933 21 N -0.123 5.123 22 H 0.267 0.733 23 C 0.002 3.998 24 N -0.238 5.238 25 C -0.079 4.079 26 C -0.223 4.223 27 C -0.172 4.172 28 C -0.006 4.006 29 C -0.168 4.168 30 C 0.060 3.940 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.239 0.761 40 H 0.185 0.815 41 H 0.165 0.835 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.154 -21.016 4.351 21.569 hybrid contribution 0.518 0.978 0.402 1.178 sum -1.636 -20.037 4.753 20.658 Atomic orbital electron populations 1.69938 1.04948 1.25105 1.56624 1.24784 0.95608 0.97692 1.02261 0.86189 0.78735 0.83646 0.77598 1.21578 1.21673 1.20704 1.18975 0.90977 0.82629 1.42948 0.90426 1.44207 1.06372 0.99503 1.81740 1.21534 0.85377 0.88381 0.99646 1.22681 0.94671 0.99682 1.00142 1.22699 0.98211 0.93532 1.00547 0.90451 1.22067 0.78602 0.96935 1.02709 1.48220 1.08489 1.27114 1.47647 1.17891 0.86973 0.81065 0.78981 1.90792 1.15207 1.70788 1.63053 1.21197 0.89832 0.91203 0.90200 1.68110 1.03684 1.15744 1.35584 1.24915 0.98567 0.89328 0.80482 1.41807 1.18420 1.40183 1.11931 0.73276 1.20486 0.88168 0.98257 0.92890 1.69530 1.13384 1.27219 1.13665 1.22626 0.91670 0.95088 0.98523 1.21478 1.00511 1.06973 0.93382 1.20819 0.98695 1.03394 0.94303 1.21751 0.92537 0.89477 0.96883 1.21892 0.98881 0.93486 1.02578 1.20625 0.91240 0.87192 0.94963 0.96048 0.93781 0.92634 0.94693 0.92030 0.92326 0.88860 0.90413 0.76125 0.81501 0.83475 0.89183 0.91276 0.91447 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.66 55.49 0.59 -25.94 16 2 C -0.01 -0.19 5.45 -17.43 -0.09 -0.29 16 3 Si 0.91 21.85 29.56 -169.99 -5.03 16.83 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.12 9.88 -15.06 -0.15 -6.27 16 8 H 0.08 2.02 7.18 -52.49 -0.38 1.64 16 9 N -0.59 -14.51 3.35 -163.03 -0.55 -15.06 16 10 C 0.17 4.06 5.46 -1.86 -0.01 4.05 16 11 C -0.13 -2.28 6.53 -25.13 -0.16 -2.44 16 12 C -0.13 -2.16 2.85 -89.37 -0.26 -2.41 16 13 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 14 C 0.12 1.61 5.52 -3.77 -0.02 1.59 16 15 N -0.58 -8.58 3.00 -173.31 -0.52 -9.10 16 16 C 0.57 8.74 7.42 -11.96 -0.09 8.65 16 17 O -0.52 -9.34 16.22 5.41 0.09 -9.25 16 18 C 0.21 2.78 5.85 -82.36 -0.48 2.30 16 19 N -0.51 -4.96 7.60 -10.67 -0.08 -5.04 16 20 C 0.35 1.79 12.24 -91.01 -1.11 0.68 16 21 N -0.52 -3.12 5.32 -12.02 -0.06 -3.19 16 22 H 0.43 0.90 8.93 -40.82 -0.36 0.54 16 23 C 0.26 2.95 8.72 -154.19 -1.34 1.61 16 24 N -0.52 -6.79 11.16 -10.91 -0.12 -6.91 16 25 C 0.06 0.80 11.70 -17.60 -0.21 0.59 16 26 C -0.20 -2.76 10.79 -39.45 -0.43 -3.19 16 27 C -0.16 -2.20 6.17 -104.64 -0.65 -2.84 16 28 C 0.12 1.72 6.32 -3.49 -0.02 1.70 16 29 C -0.13 -2.24 5.45 -27.00 -0.15 -2.39 16 30 C 0.17 3.27 2.55 -68.00 -0.17 3.10 16 31 H 0.02 0.44 7.94 -51.93 -0.41 0.03 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.06 1.43 7.25 -51.93 -0.38 1.06 16 34 H 0.03 0.90 7.86 -51.93 -0.41 0.49 16 35 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.13 4.82 -51.93 -0.25 0.88 16 38 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 39 H 0.22 -0.17 8.06 -52.49 -0.42 -0.60 16 40 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 41 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 42 H 0.09 1.35 6.97 -51.93 -0.36 0.99 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.07 1.25 8.13 -51.93 -0.42 0.82 16 45 H 0.08 1.40 7.64 -51.92 -0.40 1.00 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -36.30 360.92 -11.46 -47.76 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.88 Total: 0.04 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -5.34 Total: 4.43 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -0.74 Total: -65.25 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.30 -11.46 -47.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036760443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.832 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds