Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99932 * 2 1 4 4 H 1.48495 * 109.47102 * 268.84816 * 3 2 1 5 5 H 1.48503 * 109.47284 * 28.85007 * 3 2 1 6 6 H 1.48497 * 109.47190 * 148.85037 * 3 2 1 7 7 C 1.38807 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00378 * 171.78735 * 7 2 1 9 9 N 1.36937 * 119.99696 * 351.78715 * 7 2 1 10 10 C 1.48259 * 126.39628 * 352.48152 * 9 7 2 11 11 C 1.55288 * 106.99693 * 184.93865 * 10 9 7 12 12 C 1.53741 * 101.87382 * 22.48762 * 11 10 9 13 13 H 1.08999 * 111.30692 * 79.82851 * 12 11 10 14 14 C 1.52241 * 114.74385 * 207.22160 * 12 11 10 15 15 N 1.47707 * 106.36667 * 169.57749 * 14 12 11 16 16 C 1.34783 * 119.68638 * 127.94312 * 15 14 12 17 17 O 1.21445 * 120.00292 * 176.85000 * 16 15 14 18 18 C 1.48635 * 119.99675 * 356.84538 * 16 15 14 19 19 N 1.33519 * 120.60184 * 44.03700 * 18 16 15 20 20 C 1.30811 * 122.65355 * 179.74076 * 19 18 16 21 21 N 1.34048 * 123.37728 * 0.55411 * 20 19 18 22 22 H 0.97006 * 120.21410 * 179.74579 * 21 20 19 23 23 C 1.36861 * 119.57966 * 359.73116 * 21 20 19 24 24 N 1.31641 * 135.96709 * 179.97438 * 23 21 20 25 25 C 1.33518 * 110.83411 * 179.97438 * 24 23 21 26 26 C 1.36075 * 110.93374 * 0.02562 * 25 24 23 27 27 C 1.39534 * 120.60897 * 224.31189 * 18 16 15 28 28 C 1.46599 * 120.63533 * 307.96309 * 15 14 12 29 29 C 1.53947 * 110.57276 * 47.80304 * 28 15 14 30 30 C 1.45464 * 126.40868 * 172.50373 * 9 7 2 31 31 H 1.09006 * 108.77881 * 265.96453 * 30 9 7 32 32 H 0.97003 * 120.00213 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.95106 * 65.59625 * 10 9 7 34 34 H 1.08999 * 109.93200 * 304.26663 * 10 9 7 35 35 H 1.09005 * 110.95413 * 264.33151 * 11 10 9 36 36 H 1.08998 * 110.95178 * 140.64563 * 11 10 9 37 37 H 1.09002 * 110.07027 * 288.79689 * 14 12 11 38 38 H 1.09003 * 110.07036 * 50.36520 * 14 12 11 39 39 H 1.07996 * 118.30418 * 180.27900 * 20 19 18 40 40 H 1.08008 * 124.53482 * 179.97438 * 25 24 23 41 41 H 1.08003 * 126.72400 * 180.02562 * 26 25 24 42 42 H 1.09003 * 109.25930 * 168.08889 * 28 15 14 43 43 H 1.09000 * 109.25260 * 287.52069 * 28 15 14 44 44 H 1.09001 * 109.88561 * 68.40886 * 29 28 15 45 45 H 1.09008 * 109.87985 * 189.48453 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5220 2.0324 -1.3997 5 1 1.4357 2.6597 0.6756 6 1 3.5353 1.4474 0.7242 7 6 2.0103 -1.2021 0.0005 8 1 3.0820 -1.2069 -0.1331 9 7 1.3362 -2.3818 0.1705 10 6 -0.0970 -2.5339 0.5184 11 6 -0.3562 -4.0515 0.7214 12 6 1.0551 -4.5743 1.0352 13 1 1.3255 -4.3854 2.0741 14 6 1.2931 -6.0305 0.6602 15 7 2.7454 -6.2633 0.7964 16 6 3.1889 -7.2998 1.5349 17 8 4.3792 -7.5308 1.6042 18 6 2.2212 -8.1602 2.2647 19 7 1.0985 -8.5742 1.6723 20 6 0.2221 -9.3358 2.2747 21 7 0.3600 -9.7618 3.5382 22 1 -0.3209 -10.3229 3.9413 23 6 1.4679 -9.4004 4.2558 24 7 1.9217 -9.6216 5.4716 25 6 3.0941 -9.0109 5.6593 26 6 3.4766 -8.3382 4.5400 27 6 2.4666 -8.5453 3.5832 28 6 3.7091 -5.3774 0.1363 29 6 3.3543 -3.9022 0.3966 30 6 1.8923 -3.7200 0.0438 31 1 1.7196 -4.0771 -0.9715 32 1 -0.4850 0.8400 0.0004 33 1 -0.7188 -2.1561 -0.2931 34 1 -0.3151 -1.9935 1.4395 35 1 -0.7466 -4.5055 -0.1895 36 1 -1.0310 -4.2229 1.5601 37 1 0.7442 -6.6856 1.3368 38 1 0.9808 -6.2076 -0.3690 39 1 -0.6601 -9.6331 1.7272 40 1 3.6624 -9.0453 6.5771 41 1 4.3791 -7.7590 4.4114 42 1 4.7077 -5.5807 0.5230 43 1 3.6945 -5.5667 -0.9371 44 1 3.5147 -3.6622 1.4477 45 1 3.9699 -3.2567 -0.2299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036760443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = 88.544241 kcal Electronic energy + Delta-G solvation = -30082.069403 eV Core-core repulsion = 26101.289376 eV Total energy + Delta-G solvation = -3980.780027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.02012 -41.45781 -39.83628 -39.66266 -36.84236 -36.19129 -34.43654 -33.29677 -31.67790 -31.30801 -30.16946 -29.63208 -27.29231 -26.37135 -24.99729 -24.38247 -23.75973 -22.32852 -21.81404 -21.41197 -20.63701 -19.52571 -19.02979 -18.48240 -17.97212 -17.53852 -17.16892 -16.89977 -16.69317 -16.24250 -15.94156 -15.67313 -15.55777 -14.93537 -14.73525 -14.53249 -14.24056 -14.12861 -14.01352 -13.78741 -13.49975 -13.45193 -13.14191 -13.01182 -12.73498 -12.65622 -12.44934 -12.10624 -12.03575 -11.85177 -11.75937 -11.60909 -11.44265 -11.33960 -10.92550 -10.71566 -10.62554 -9.87134 -9.69080 -9.04279 -8.83921 -7.84188 -5.18050 -1.30804 0.38022 1.22881 1.32664 1.45392 1.46642 1.54983 1.62135 2.20451 2.35142 2.50185 2.71017 2.97086 3.33837 3.44253 3.46955 3.60658 3.82088 3.93179 4.01677 4.06069 4.18258 4.23090 4.29745 4.38054 4.40857 4.47562 4.66063 4.70963 4.78772 4.82403 4.85745 4.89548 5.00734 5.10031 5.12132 5.17110 5.37649 5.40959 5.52355 5.53934 5.62302 5.69074 5.78148 5.91094 6.12200 6.22216 6.43005 6.80153 6.82196 7.10328 7.80736 8.48847 9.27247 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017829 B = 0.002941 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.124963 B = 9516.687729 C = 9846.461856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.969 3.031 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.616 5.616 10 C 0.177 3.823 11 C -0.113 4.113 12 C -0.114 4.114 13 H 0.058 0.942 14 C 0.130 3.870 15 N -0.585 5.585 16 C 0.562 3.438 17 O -0.557 6.557 18 C 0.210 3.790 19 N -0.527 5.527 20 C 0.383 3.617 21 N -0.500 5.500 22 H 0.452 0.548 23 C 0.258 3.742 24 N -0.538 5.538 25 C 0.055 3.945 26 C -0.231 4.231 27 C -0.198 4.198 28 C 0.124 3.876 29 C -0.121 4.121 30 C 0.157 3.843 31 H 0.027 0.973 32 H 0.245 0.755 33 H 0.022 0.978 34 H -0.004 1.004 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.294 0.706 40 H 0.186 0.814 41 H 0.132 0.868 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 -23.795 3.661 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.798 3.202 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.340 5.340 10 C 0.052 3.948 11 C -0.151 4.151 12 C -0.135 4.135 13 H 0.076 0.924 14 C 0.009 3.991 15 N -0.315 5.315 16 C 0.348 3.652 17 O -0.434 6.434 18 C 0.074 3.926 19 N -0.248 5.248 20 C 0.102 3.898 21 N -0.105 5.105 22 H 0.295 0.705 23 C 0.004 3.996 24 N -0.259 5.259 25 C -0.087 4.087 26 C -0.255 4.255 27 C -0.210 4.210 28 C 0.002 3.998 29 C -0.160 4.160 30 C 0.050 3.950 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.040 0.960 34 H 0.015 0.985 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.309 0.691 40 H 0.203 0.797 41 H 0.150 0.850 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.058 -23.946 3.645 24.559 hybrid contribution 1.028 1.811 0.548 2.153 sum -3.030 -22.135 4.193 22.731 Atomic orbital electron populations 1.70137 1.06175 1.25138 1.58262 1.25553 0.96460 1.00753 1.03109 0.85223 0.77659 0.79786 0.77541 1.21123 1.22258 1.19867 1.19333 0.91436 0.83984 1.41445 0.90150 1.44506 1.07221 1.00731 1.81574 1.21370 0.84541 0.92416 0.96458 1.22536 0.95432 0.94762 1.02418 1.22545 0.97034 0.95285 0.98622 0.92354 1.22111 0.78037 0.94570 1.04420 1.48268 1.08941 1.26846 1.47460 1.18301 0.87105 0.81259 0.78498 1.90767 1.16902 1.71745 1.64025 1.20890 0.90752 0.91179 0.89747 1.68087 1.03210 1.17469 1.36074 1.26373 0.98290 0.85508 0.79625 1.41954 1.17175 1.39569 1.11822 0.70469 1.20605 0.89185 0.97556 0.92292 1.69526 1.13727 1.28076 1.14595 1.22916 0.91986 0.94863 0.98939 1.21496 1.00897 1.08379 0.94723 1.20968 0.99835 1.05287 0.94910 1.21620 0.92584 0.87630 0.98004 1.21774 0.97634 0.95424 1.01160 1.20869 0.92813 0.85359 0.95964 0.95528 0.94535 0.95976 0.98516 0.89405 0.89875 0.86620 0.88374 0.69121 0.79733 0.84982 0.89535 0.89373 0.93324 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.68 10.66 21.65 0.23 -56.45 16 2 C -0.07 -3.72 5.45 84.86 0.46 -3.26 16 3 Si 0.97 45.96 29.56 68.60 2.03 47.99 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.23 -12.84 9.88 84.03 0.83 -12.01 16 8 H 0.08 4.26 7.18 -2.91 -0.02 4.24 16 9 N -0.62 -30.64 3.35 -669.72 -2.25 -32.88 16 10 C 0.18 8.36 5.46 86.83 0.47 8.84 16 11 C -0.11 -3.62 6.53 31.63 0.21 -3.42 16 12 C -0.11 -3.61 2.85 -9.98 -0.03 -3.64 16 13 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 14 C 0.13 3.08 5.52 85.90 0.47 3.56 16 15 N -0.58 -16.21 3.00 -820.56 -2.46 -18.67 16 16 C 0.56 16.87 7.42 87.02 0.65 17.52 16 17 O -0.56 -20.16 16.22 -3.54 -0.06 -20.22 16 18 C 0.21 5.15 5.85 41.98 0.25 5.40 16 19 N -0.53 -7.86 7.60 -187.68 -1.43 -9.29 16 20 C 0.38 1.56 12.24 180.49 2.21 3.77 16 21 N -0.50 -3.61 5.32 -191.95 -1.02 -4.63 16 22 H 0.45 -0.59 8.93 -92.70 -0.83 -1.41 16 23 C 0.26 5.37 8.72 136.29 1.19 6.56 16 24 N -0.54 -13.57 11.16 -188.43 -2.10 -15.67 16 25 C 0.06 1.42 11.70 83.93 0.98 2.40 16 26 C -0.23 -6.67 10.79 22.36 0.24 -6.43 16 27 C -0.20 -5.28 6.17 -19.88 -0.12 -5.40 16 28 C 0.12 3.58 6.32 86.68 0.55 4.12 16 29 C -0.12 -4.21 5.45 30.42 0.17 -4.04 16 30 C 0.16 6.01 2.55 45.50 0.12 6.13 16 31 H 0.03 1.03 7.94 -2.38 -0.02 1.01 16 32 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.02 1.18 7.25 -2.39 -0.02 1.16 16 34 H 0.00 -0.19 7.86 -2.39 -0.02 -0.21 16 35 H 0.09 2.40 8.12 -2.38 -0.02 2.38 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.12 2.29 4.82 -2.39 -0.01 2.28 16 38 H 0.10 2.03 8.08 -2.39 -0.02 2.01 16 39 H 0.29 -3.12 8.06 -2.91 -0.02 -3.15 16 40 H 0.19 3.64 8.06 -2.91 -0.02 3.62 16 41 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 42 H 0.09 2.59 6.97 -2.39 -0.02 2.57 16 43 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.05 1.85 8.13 -2.39 -0.02 1.83 16 45 H 0.07 2.61 7.64 -2.38 -0.02 2.59 16 Total: -1.00 -86.23 360.92 1.80 -84.43 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.21 Total: 5.30 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 8.64 Total: 20.10 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -9.03 Total: -137.61 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.06 Total: -20.22 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -86.23 1.80 -84.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036760443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.976 kcal (2) G-P(sol) polarization free energy of solvation -86.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds