Wall clock time and date at job start Sat Apr 11 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00018 * 2 1 4 4 H 1.48504 * 109.46937 * 240.00522 * 3 2 1 5 5 H 1.48500 * 109.46828 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47162 * 120.00330 * 3 2 1 7 7 C 1.38818 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00078 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99557 * 359.97438 * 7 2 1 10 10 C 1.47425 * 126.06064 * 0.02562 * 9 7 2 11 11 C 1.54494 * 107.15215 * 178.38509 * 10 9 7 12 12 C 1.56017 * 102.62159 * 337.16743 * 11 10 9 13 13 H 1.08996 * 112.90537 * 157.10557 * 12 11 10 14 14 C 1.53645 * 106.25226 * 281.81392 * 12 11 10 15 15 N 1.46529 * 109.96478 * 157.19977 * 14 12 11 16 16 C 1.34777 * 121.00601 * 124.38626 * 15 14 12 17 17 O 1.21451 * 120.00464 * 5.88859 * 16 15 14 18 18 C 1.48637 * 119.99500 * 185.88332 * 16 15 14 19 19 N 1.33506 * 120.60795 * 354.12489 * 18 16 15 20 20 C 1.30804 * 122.65769 * 180.02562 * 19 18 16 21 21 N 1.34053 * 123.38084 * 0.02562 * 20 19 18 22 22 H 0.97004 * 120.21549 * 179.97438 * 21 20 19 23 23 C 1.36871 * 119.57243 * 0.02562 * 21 20 19 24 24 N 1.31632 * 135.96266 * 179.97438 * 23 21 20 25 25 C 1.33521 * 110.83590 * 180.02562 * 24 23 21 26 26 C 1.36068 * 110.93070 * 0.02562 * 25 24 23 27 27 C 1.39549 * 120.59971 * 174.39948 * 18 16 15 28 28 C 1.47138 * 117.98143 * 304.11213 * 15 14 12 29 29 C 1.53055 * 107.68278 * 57.68655 * 28 15 14 30 30 C 1.46471 * 126.05087 * 180.02562 * 9 7 2 31 31 H 1.09001 * 107.75136 * 90.46388 * 30 9 7 32 32 H 0.96996 * 119.99989 * 0.02562 * 1 2 3 33 33 H 1.09005 * 109.89917 * 59.00664 * 10 9 7 34 34 H 1.08997 * 110.05546 * 297.85634 * 10 9 7 35 35 H 1.09001 * 110.78402 * 218.87898 * 11 10 9 36 36 H 1.09007 * 110.77838 * 95.44716 * 11 10 9 37 37 H 1.09001 * 109.50437 * 37.03293 * 14 12 11 38 38 H 1.08994 * 109.44043 * 277.33304 * 14 12 11 39 39 H 1.08001 * 118.31369 * 179.97438 * 20 19 18 40 40 H 1.08004 * 124.53702 * 179.97438 * 25 24 23 41 41 H 1.08008 * 126.72400 * 179.97438 * 26 25 24 42 42 H 1.08993 * 109.81994 * 177.23138 * 28 15 14 43 43 H 1.08997 * 109.81788 * 298.14519 * 28 15 14 44 44 H 1.09005 * 109.14702 * 66.00738 * 29 28 15 45 45 H 1.08995 * 109.15327 * 185.17347 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1405 -2.5437 -0.0005 11 6 -0.4378 -4.0592 -0.0421 12 6 0.8717 -4.6469 -0.6535 13 1 1.0213 -5.6976 -0.4055 14 6 0.7952 -4.3857 -2.1657 15 7 2.1419 -4.3916 -2.7432 16 6 2.4556 -5.2128 -3.7648 17 8 1.5917 -5.8849 -4.2911 18 6 3.8590 -5.2959 -4.2474 19 7 4.7955 -4.4796 -3.7583 20 6 6.0416 -4.5175 -4.1542 21 7 6.4950 -5.3722 -5.0821 22 1 7.4296 -5.3602 -5.3418 23 6 5.6306 -6.2614 -5.6614 24 7 5.7167 -7.2094 -6.5706 25 6 4.5295 -7.7878 -6.7674 26 6 3.5782 -7.2283 -5.9715 27 6 4.2205 -6.2247 -5.2242 28 6 3.1395 -3.4695 -2.1780 29 6 3.2668 -3.7806 -0.6848 30 6 1.9200 -3.7267 -0.0005 31 1 2.0472 -4.0339 1.0375 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5651 -2.0580 -0.8792 34 1 -0.5627 -2.1074 0.9047 35 1 -1.2927 -4.2681 -0.6854 36 1 -0.6042 -4.4483 0.9624 37 1 0.3300 -3.4163 -2.3445 38 1 0.1962 -5.1640 -2.6384 39 1 6.7411 -3.8239 -3.7114 40 1 4.3483 -8.5917 -7.4656 41 1 2.5339 -7.5001 -5.9244 42 1 4.1008 -3.6184 -2.6696 43 1 2.8096 -2.4396 -2.3140 44 1 3.6905 -4.7775 -0.5621 45 1 3.9319 -3.0510 -0.2229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036760445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:10 Heat of formation + Delta-G solvation = 125.470255 kcal Electronic energy + Delta-G solvation = -30533.173746 eV Core-core repulsion = 26553.994951 eV Total energy + Delta-G solvation = -3979.178795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.16635 -40.02952 -38.89604 -38.22725 -35.55266 -34.78576 -32.70610 -31.57597 -30.72655 -29.51541 -29.08554 -27.67787 -26.12727 -24.84255 -23.92849 -23.51374 -22.44304 -21.46584 -20.24498 -19.94697 -18.81857 -18.42134 -17.92608 -16.93879 -16.43471 -16.06523 -15.98022 -15.93457 -15.25276 -14.91665 -14.52004 -14.31971 -13.89713 -13.80543 -13.33389 -13.14396 -12.94850 -12.89898 -12.67750 -12.46425 -12.10470 -11.83315 -11.52825 -11.47125 -11.18008 -11.06080 -10.81164 -10.71411 -10.30068 -10.15337 -10.08441 -9.90153 -9.84680 -9.62807 -9.60658 -8.89498 -8.84733 -8.59709 -8.22764 -8.02482 -6.80474 -5.71127 -3.03397 -0.47165 1.11662 1.90377 2.56604 2.97100 3.19975 3.37716 3.42031 3.44521 3.48624 3.55675 3.90372 4.25255 4.48383 4.55142 4.65365 5.03119 5.23596 5.26410 5.34723 5.44574 5.57468 5.61133 5.75996 5.85421 5.90933 5.98741 6.07683 6.11239 6.15315 6.20681 6.31527 6.36119 6.39469 6.49151 6.56294 6.70898 6.79155 6.81603 6.84543 6.94684 7.07359 7.19666 7.56870 7.61775 7.71720 7.74159 7.81901 8.24829 8.25817 9.21272 9.83727 10.51860 11.41102 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015920 B = 0.003501 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.402189 B = 7994.822647 C = 9118.456349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.177 3.823 11 C -0.143 4.143 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.123 3.877 15 N -0.569 5.569 16 C 0.557 3.443 17 O -0.530 6.530 18 C 0.211 3.789 19 N -0.500 5.500 20 C 0.348 3.652 21 N -0.518 5.518 22 H 0.427 0.573 23 C 0.252 3.748 24 N -0.518 5.518 25 C 0.055 3.945 26 C -0.190 4.190 27 C -0.155 4.155 28 C 0.049 3.951 29 C -0.122 4.122 30 C 0.168 3.832 31 H 0.015 0.985 32 H 0.252 0.748 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.223 0.777 40 H 0.167 0.833 41 H 0.153 0.847 42 H 0.161 0.839 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.424 -10.667 -7.581 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.182 4.182 12 C -0.135 4.135 13 H 0.095 0.905 14 C 0.001 3.999 15 N -0.298 5.298 16 C 0.341 3.659 17 O -0.407 6.407 18 C 0.077 3.923 19 N -0.221 5.221 20 C 0.066 3.934 21 N -0.122 5.122 22 H 0.266 0.734 23 C -0.002 4.002 24 N -0.238 5.238 25 C -0.087 4.087 26 C -0.214 4.214 27 C -0.168 4.168 28 C -0.072 4.072 29 C -0.161 4.161 30 C 0.060 3.940 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.239 0.761 40 H 0.184 0.816 41 H 0.171 0.829 42 H 0.176 0.824 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.376 -10.579 -7.822 18.063 hybrid contribution 0.263 0.784 0.019 0.828 sum 12.640 -9.794 -7.804 17.793 Atomic orbital electron populations 1.69938 1.04850 1.25031 1.57040 1.24768 0.95618 0.97483 1.02550 0.86276 0.78494 0.83659 0.77770 1.21256 1.21773 1.21308 1.18906 0.90333 0.82179 1.43556 0.90384 1.44312 1.01426 0.99431 1.86751 1.21226 0.84417 0.88210 1.00938 1.23149 0.95887 0.99667 0.99473 1.22813 0.97952 0.98434 0.94344 0.90511 1.21751 0.82355 1.03130 0.92618 1.48046 1.13731 1.36543 1.31528 1.17800 0.85696 0.81133 0.81251 1.90745 1.47635 1.45174 1.57097 1.21500 0.93421 0.88270 0.89125 1.67810 0.99774 1.26162 1.28356 1.25252 0.94147 0.89077 0.84876 1.41806 1.13418 1.26234 1.30730 0.73386 1.20518 0.87527 0.94689 0.97490 1.69510 1.27640 1.09490 1.17203 1.22647 0.87530 0.99257 0.99225 1.21603 1.01156 0.98483 1.00131 1.20792 0.94055 1.01142 1.00772 1.23601 0.95891 0.93366 0.94362 1.21521 0.98477 1.00216 0.95933 1.20310 0.91204 0.86958 0.95518 0.96760 0.93792 0.93579 0.94025 0.92004 0.92352 0.89930 0.90273 0.76097 0.81624 0.82916 0.82444 0.90057 0.93342 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 10.38 55.49 0.58 -25.54 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.22 -5.66 9.01 -15.06 -0.14 -5.79 16 8 H 0.08 1.89 6.69 -52.49 -0.35 1.54 16 9 N -0.59 -13.96 3.12 -164.48 -0.51 -14.47 16 10 C 0.18 4.10 4.63 -2.75 -0.01 4.09 16 11 C -0.14 -2.62 6.29 -24.33 -0.15 -2.77 16 12 C -0.12 -2.03 3.88 -88.14 -0.34 -2.37 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.12 2.23 5.45 -3.69 -0.02 2.21 16 15 N -0.57 -9.78 2.93 -173.54 -0.51 -10.29 16 16 C 0.56 9.49 7.71 -11.97 -0.09 9.40 16 17 O -0.53 -10.14 14.90 5.41 0.08 -10.06 16 18 C 0.21 2.99 6.75 -82.36 -0.56 2.44 16 19 N -0.50 -5.41 6.03 -10.67 -0.06 -5.47 16 20 C 0.35 2.07 12.24 -91.01 -1.11 0.96 16 21 N -0.52 -3.37 5.32 -12.02 -0.06 -3.44 16 22 H 0.43 1.09 8.93 -40.82 -0.36 0.73 16 23 C 0.25 2.99 8.72 -154.19 -1.34 1.65 16 24 N -0.52 -6.91 11.16 -10.91 -0.12 -7.03 16 25 C 0.06 0.71 11.70 -17.60 -0.21 0.50 16 26 C -0.19 -2.71 10.26 -39.45 -0.40 -3.11 16 27 C -0.16 -2.22 6.19 -104.64 -0.65 -2.86 16 28 C 0.05 0.81 6.19 -3.67 -0.02 0.78 16 29 C -0.12 -2.05 5.19 -27.63 -0.14 -2.19 16 30 C 0.17 3.27 2.85 -68.35 -0.19 3.08 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.05 1.19 6.99 -51.93 -0.36 0.83 16 34 H 0.04 1.08 7.57 -51.93 -0.39 0.69 16 35 H 0.06 1.03 7.97 -51.93 -0.41 0.62 16 36 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 37 H 0.08 1.68 6.81 -51.93 -0.35 1.33 16 38 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 39 H 0.22 0.05 8.06 -52.49 -0.42 -0.38 16 40 H 0.17 1.61 8.06 -52.48 -0.42 1.18 16 41 H 0.15 2.21 7.40 -52.48 -0.39 1.82 16 42 H 0.16 2.16 3.34 -101.91 -0.34 1.82 16 43 H 0.08 1.59 7.48 -51.93 -0.39 1.20 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.24 7.01 -51.93 -0.36 0.87 16 LS Contribution 351.44 15.07 5.30 5.30 Total: -1.00 -34.90 351.44 -11.58 -46.48 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.76 Total: 2.70 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -5.48 Total: 5.70 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -0.70 Total: -66.24 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.90 -11.58 -46.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036760445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.949 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds