Wall clock time and date at job start Sat Apr 11 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00018 * 2 1 4 4 H 1.48504 * 109.46937 * 240.00522 * 3 2 1 5 5 H 1.48500 * 109.46828 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47162 * 120.00330 * 3 2 1 7 7 C 1.38818 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00078 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99557 * 359.97438 * 7 2 1 10 10 C 1.47425 * 126.06064 * 0.02562 * 9 7 2 11 11 C 1.54494 * 107.15215 * 178.38509 * 10 9 7 12 12 C 1.56017 * 102.62159 * 337.16743 * 11 10 9 13 13 H 1.08996 * 112.90537 * 157.10557 * 12 11 10 14 14 C 1.53645 * 106.25226 * 281.81392 * 12 11 10 15 15 N 1.46529 * 109.96478 * 157.19977 * 14 12 11 16 16 C 1.34777 * 121.00601 * 124.38626 * 15 14 12 17 17 O 1.21451 * 120.00464 * 5.88859 * 16 15 14 18 18 C 1.48637 * 119.99500 * 185.88332 * 16 15 14 19 19 N 1.33506 * 120.60795 * 354.12489 * 18 16 15 20 20 C 1.30804 * 122.65769 * 180.02562 * 19 18 16 21 21 N 1.34053 * 123.38084 * 0.02562 * 20 19 18 22 22 H 0.97004 * 120.21549 * 179.97438 * 21 20 19 23 23 C 1.36871 * 119.57243 * 0.02562 * 21 20 19 24 24 N 1.31632 * 135.96266 * 179.97438 * 23 21 20 25 25 C 1.33521 * 110.83590 * 180.02562 * 24 23 21 26 26 C 1.36068 * 110.93070 * 0.02562 * 25 24 23 27 27 C 1.39549 * 120.59971 * 174.39948 * 18 16 15 28 28 C 1.47138 * 117.98143 * 304.11213 * 15 14 12 29 29 C 1.53055 * 107.68278 * 57.68655 * 28 15 14 30 30 C 1.46471 * 126.05087 * 180.02562 * 9 7 2 31 31 H 1.09001 * 107.75136 * 90.46388 * 30 9 7 32 32 H 0.96996 * 119.99989 * 0.02562 * 1 2 3 33 33 H 1.09005 * 109.89917 * 59.00664 * 10 9 7 34 34 H 1.08997 * 110.05546 * 297.85634 * 10 9 7 35 35 H 1.09001 * 110.78402 * 218.87898 * 11 10 9 36 36 H 1.09007 * 110.77838 * 95.44716 * 11 10 9 37 37 H 1.09001 * 109.50437 * 37.03293 * 14 12 11 38 38 H 1.08994 * 109.44043 * 277.33304 * 14 12 11 39 39 H 1.08001 * 118.31369 * 179.97438 * 20 19 18 40 40 H 1.08004 * 124.53702 * 179.97438 * 25 24 23 41 41 H 1.08008 * 126.72400 * 179.97438 * 26 25 24 42 42 H 1.08993 * 109.81994 * 177.23138 * 28 15 14 43 43 H 1.08997 * 109.81788 * 298.14519 * 28 15 14 44 44 H 1.09005 * 109.14702 * 66.00738 * 29 28 15 45 45 H 1.08995 * 109.15327 * 185.17347 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1405 -2.5437 -0.0005 11 6 -0.4378 -4.0592 -0.0421 12 6 0.8717 -4.6469 -0.6535 13 1 1.0213 -5.6976 -0.4055 14 6 0.7952 -4.3857 -2.1657 15 7 2.1419 -4.3916 -2.7432 16 6 2.4556 -5.2128 -3.7648 17 8 1.5917 -5.8849 -4.2911 18 6 3.8590 -5.2959 -4.2474 19 7 4.7955 -4.4796 -3.7583 20 6 6.0416 -4.5175 -4.1542 21 7 6.4950 -5.3722 -5.0821 22 1 7.4296 -5.3602 -5.3418 23 6 5.6306 -6.2614 -5.6614 24 7 5.7167 -7.2094 -6.5706 25 6 4.5295 -7.7878 -6.7674 26 6 3.5782 -7.2283 -5.9715 27 6 4.2205 -6.2247 -5.2242 28 6 3.1395 -3.4695 -2.1780 29 6 3.2668 -3.7806 -0.6848 30 6 1.9200 -3.7267 -0.0005 31 1 2.0472 -4.0339 1.0375 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5651 -2.0580 -0.8792 34 1 -0.5627 -2.1074 0.9047 35 1 -1.2927 -4.2681 -0.6854 36 1 -0.6042 -4.4483 0.9624 37 1 0.3300 -3.4163 -2.3445 38 1 0.1962 -5.1640 -2.6384 39 1 6.7411 -3.8239 -3.7114 40 1 4.3483 -8.5917 -7.4656 41 1 2.5339 -7.5001 -5.9244 42 1 4.1008 -3.6184 -2.6696 43 1 2.8096 -2.4396 -2.3140 44 1 3.6905 -4.7775 -0.5621 45 1 3.9319 -3.0510 -0.2229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036760445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:10 Heat of formation + Delta-G solvation = 103.479308 kcal Electronic energy + Delta-G solvation = -30534.127345 eV Core-core repulsion = 26553.994951 eV Total energy + Delta-G solvation = -3980.132394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.03959 -41.39371 -39.81927 -39.64812 -36.68855 -36.03797 -34.48525 -33.13246 -31.65873 -31.08683 -30.17421 -29.22668 -27.40193 -26.45799 -25.15704 -24.55120 -23.85346 -22.48085 -21.80012 -21.26077 -20.05225 -19.43365 -19.08775 -18.25132 -17.74242 -17.24614 -17.14036 -16.97539 -16.83894 -16.35605 -15.98245 -15.67940 -15.31028 -15.15165 -14.55017 -14.38556 -14.23525 -14.01152 -13.96109 -13.82975 -13.47130 -13.18333 -13.06959 -12.80795 -12.74642 -12.64456 -12.50922 -12.29509 -12.00739 -11.78184 -11.56374 -11.50028 -11.41660 -11.17803 -10.82820 -10.59005 -10.04081 -9.79129 -9.59067 -9.01462 -8.75521 -7.73913 -5.06888 -1.38028 0.34912 1.26267 1.41028 1.50994 1.53887 1.59488 1.76321 2.25421 2.50016 2.57517 2.68581 2.96956 3.45487 3.46480 3.59467 3.65998 3.89475 3.94156 4.02667 4.07179 4.21896 4.36050 4.41298 4.44175 4.53702 4.61760 4.75655 4.78869 4.82919 4.87140 5.01403 5.13804 5.16426 5.25225 5.31408 5.34285 5.38975 5.49898 5.58828 5.62569 5.70306 5.83053 5.84674 5.96344 6.28542 6.31298 6.49709 6.80749 6.94531 7.19135 7.89522 8.57029 9.37876 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015920 B = 0.003501 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.402189 B = 7994.822647 C = 9118.456349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.307 1.307 6 H -0.277 1.277 7 C -0.214 4.214 8 H 0.094 0.906 9 N -0.608 5.608 10 C 0.186 3.814 11 C -0.131 4.131 12 C -0.102 4.102 13 H 0.104 0.896 14 C 0.129 3.871 15 N -0.573 5.573 16 C 0.552 3.448 17 O -0.559 6.559 18 C 0.207 3.793 19 N -0.525 5.525 20 C 0.382 3.618 21 N -0.496 5.496 22 H 0.452 0.548 23 C 0.259 3.741 24 N -0.535 5.535 25 C 0.056 3.944 26 C -0.222 4.222 27 C -0.186 4.186 28 C 0.057 3.943 29 C -0.116 4.116 30 C 0.159 3.841 31 H 0.013 0.987 32 H 0.240 0.760 33 H 0.009 0.991 34 H 0.003 0.997 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.292 0.708 40 H 0.188 0.812 41 H 0.137 0.863 42 H 0.194 0.806 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.776 -11.407 -7.700 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.265 4.265 3 Si 0.799 3.201 4 H -0.199 1.199 5 H -0.234 1.234 6 H -0.203 1.203 7 C -0.343 4.343 8 H 0.111 0.889 9 N -0.333 5.333 10 C 0.061 3.939 11 C -0.169 4.169 12 C -0.122 4.122 13 H 0.122 0.878 14 C 0.006 3.994 15 N -0.302 5.302 16 C 0.339 3.661 17 O -0.438 6.438 18 C 0.073 3.927 19 N -0.245 5.245 20 C 0.102 3.898 21 N -0.102 5.102 22 H 0.296 0.704 23 C 0.004 3.996 24 N -0.256 5.256 25 C -0.086 4.086 26 C -0.246 4.246 27 C -0.198 4.198 28 C -0.064 4.064 29 C -0.155 4.155 30 C 0.052 3.948 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.027 0.973 34 H 0.022 0.978 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.307 0.693 40 H 0.205 0.795 41 H 0.155 0.845 42 H 0.208 0.792 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.825 -11.344 -7.947 21.793 hybrid contribution -0.995 1.007 0.050 1.417 sum 15.830 -10.336 -7.897 20.489 Atomic orbital electron populations 1.70185 1.06430 1.24736 1.59413 1.25576 0.96362 1.00827 1.03769 0.85262 0.77083 0.79361 0.78350 1.19880 1.23395 1.20332 1.19353 0.91173 0.82897 1.40910 0.88881 1.44553 1.01701 1.00729 1.86310 1.20933 0.84502 0.91155 0.97324 1.23027 0.97093 0.95884 1.00929 1.22782 0.96516 0.99365 0.93518 0.87789 1.21535 0.83333 1.01295 0.93224 1.48085 1.13313 1.36996 1.31830 1.18282 0.87086 0.80284 0.80489 1.90721 1.49147 1.46167 1.57757 1.20987 0.92501 0.89454 0.89783 1.67308 1.01343 1.26199 1.29658 1.26483 0.93065 0.87787 0.82502 1.41885 1.14075 1.24517 1.29692 0.70381 1.20640 0.87477 0.94745 0.96744 1.69542 1.27598 1.10398 1.18108 1.22990 0.87149 0.99450 0.99040 1.21592 1.00927 1.00100 1.01952 1.20943 0.95705 1.01690 1.01511 1.23741 0.97044 0.91056 0.94585 1.21471 0.96600 1.01763 0.95640 1.20561 0.93146 0.85089 0.95968 0.96938 0.95040 0.97318 0.97836 0.90527 0.90750 0.93226 0.90141 0.69277 0.79468 0.84537 0.79201 0.93871 0.90717 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.07 10.38 21.65 0.22 -56.84 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 3 Si 0.97 44.04 29.55 68.60 2.03 46.07 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.31 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.21 -11.03 9.01 84.03 0.76 -10.28 16 8 H 0.09 4.40 6.69 -2.91 -0.02 4.38 16 9 N -0.61 -29.07 3.12 -674.30 -2.10 -31.17 16 10 C 0.19 9.07 4.63 86.71 0.40 9.47 16 11 C -0.13 -4.80 6.29 32.15 0.20 -4.60 16 12 C -0.10 -3.49 3.88 -9.19 -0.04 -3.53 16 13 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 14 C 0.13 4.72 5.45 86.59 0.47 5.19 16 15 N -0.57 -19.47 2.93 -821.29 -2.40 -21.88 16 16 C 0.55 18.73 7.71 87.02 0.67 19.40 16 17 O -0.56 -21.99 14.90 -3.56 -0.05 -22.05 16 18 C 0.21 5.55 6.75 41.99 0.28 5.84 16 19 N -0.52 -9.30 6.03 -187.67 -1.13 -10.43 16 20 C 0.38 2.26 12.24 180.49 2.21 4.47 16 21 N -0.50 -3.92 5.32 -191.95 -1.02 -4.94 16 22 H 0.45 -0.39 8.93 -92.70 -0.83 -1.21 16 23 C 0.26 5.42 8.72 136.28 1.19 6.61 16 24 N -0.54 -13.22 11.16 -188.44 -2.10 -15.33 16 25 C 0.06 1.39 11.70 83.93 0.98 2.37 16 26 C -0.22 -6.42 10.26 22.36 0.23 -6.19 16 27 C -0.19 -5.10 6.19 -19.88 -0.12 -5.22 16 28 C 0.06 1.77 6.19 86.28 0.53 2.30 16 29 C -0.12 -3.60 5.19 30.01 0.16 -3.44 16 30 C 0.16 6.03 2.85 44.74 0.13 6.15 16 31 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.01 0.48 6.99 -2.38 -0.02 0.46 16 34 H 0.00 0.19 7.57 -2.39 -0.02 0.17 16 35 H 0.08 2.58 7.97 -2.39 -0.02 2.56 16 36 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 37 H 0.05 2.13 6.81 -2.39 -0.02 2.12 16 38 H 0.08 2.90 7.02 -2.39 -0.02 2.88 16 39 H 0.29 -2.43 8.06 -2.91 -0.02 -2.45 16 40 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 41 H 0.14 4.23 7.40 -2.91 -0.02 4.21 16 42 H 0.19 4.61 3.34 -101.07 -0.34 4.27 16 43 H 0.04 1.68 7.48 -2.39 -0.02 1.66 16 44 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.07 2.30 7.01 -2.39 -0.02 2.29 16 Total: -1.00 -83.32 351.44 1.85 -81.47 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -0.10 Total: 10.10 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 8.52 Total: 25.00 kcal Atomic # 7 Polarization: -132.05 SS G_CDS: -8.54 Total: -140.59 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -83.32 1.85 -81.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036760445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.951 kcal (2) G-P(sol) polarization free energy of solvation -83.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds