Wall clock time and date at job start Sat Apr 11 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00601 * 2 1 4 4 H 1.48499 * 109.47208 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46831 * 299.99894 * 3 2 1 6 6 H 1.48506 * 109.46888 * 59.99758 * 3 2 1 7 7 C 1.38824 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00032 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99528 * 0.02562 * 7 2 1 10 10 C 1.47427 * 126.06082 * 0.02562 * 9 7 2 11 11 C 1.54503 * 107.15538 * 181.57496 * 10 9 7 12 12 C 1.55515 * 102.19271 * 23.33912 * 11 10 9 13 13 H 1.09001 * 112.35767 * 202.11173 * 12 11 10 14 14 C 1.52730 * 106.81572 * 77.70269 * 12 11 10 15 15 N 1.46526 * 110.47305 * 202.66761 * 14 12 11 16 16 C 1.34771 * 121.01294 * 235.56654 * 15 14 12 17 17 O 1.21451 * 120.00174 * 9.60401 * 16 15 14 18 18 C 1.48639 * 119.99960 * 189.61242 * 16 15 14 19 19 N 1.33506 * 120.60085 * 7.07528 * 18 16 15 20 20 C 1.30811 * 122.65337 * 180.02562 * 19 18 16 21 21 N 1.34058 * 123.38078 * 359.93365 * 20 19 18 22 22 H 0.97003 * 120.20918 * 180.02562 * 21 20 19 23 23 C 1.36868 * 119.56897 * 0.02562 * 21 20 19 24 24 N 1.31632 * 135.95691 * 180.38511 * 23 21 20 25 25 C 1.33523 * 110.83691 * 180.02562 * 24 23 21 26 26 C 1.36074 * 110.92317 * 359.54238 * 25 24 23 27 27 C 1.39537 * 120.60502 * 187.00729 * 18 16 15 28 28 C 1.47140 * 117.97152 * 55.28931 * 15 14 12 29 29 C 1.53045 * 107.68697 * 302.83197 * 28 15 14 30 30 C 1.46467 * 126.05140 * 179.97438 * 9 7 2 31 31 H 1.09003 * 108.34635 * 269.16965 * 30 9 7 32 32 H 0.97007 * 119.99387 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.90309 * 300.95299 * 10 9 7 34 34 H 1.08998 * 109.90469 * 62.01245 * 10 9 7 35 35 H 1.08992 * 110.78290 * 141.10810 * 11 10 9 36 36 H 1.08999 * 110.77823 * 264.54610 * 11 10 9 37 37 H 1.09001 * 109.25128 * 82.33603 * 14 12 11 38 38 H 1.08996 * 109.18127 * 322.95072 * 14 12 11 39 39 H 1.07998 * 118.30951 * 179.97438 * 20 19 18 40 40 H 1.08004 * 124.53849 * 179.81046 * 25 24 23 41 41 H 1.08004 * 126.72116 * 180.30526 * 26 25 24 42 42 H 1.08999 * 109.81692 * 62.37531 * 28 15 14 43 43 H 1.08995 * 109.81861 * 183.28965 * 28 15 14 44 44 H 1.08995 * 109.15462 * 174.81811 * 29 28 15 45 45 H 1.09001 * 109.15385 * 293.98068 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1407 -2.5436 -0.0005 11 6 -0.4383 -4.0591 0.0405 12 6 0.8658 -4.6331 0.6637 13 1 1.0090 -5.6875 0.4274 14 6 0.7940 -4.3632 2.1652 15 7 2.1372 -4.3627 2.7507 16 6 2.4459 -5.1750 3.7809 17 8 1.6680 -6.0418 4.1250 18 6 3.7385 -5.0097 4.4960 19 7 4.5390 -3.9768 4.2231 20 6 5.6845 -3.7927 4.8272 21 7 6.1608 -4.6159 5.7720 22 1 7.0170 -4.4350 6.1906 23 6 5.4313 -5.7133 6.1419 24 7 5.5747 -6.6984 7.0031 25 6 4.5293 -7.5277 6.9545 26 6 3.6173 -7.1067 6.0365 27 6 4.1365 -5.9306 5.4659 28 6 3.1404 -3.4529 2.1755 29 6 3.2660 -3.7811 0.6860 30 6 1.9197 -3.7267 0.0005 31 1 2.0453 -4.0464 -1.0340 32 1 -0.4849 0.8402 -0.0004 33 1 -0.5659 -2.0581 0.8778 34 1 -0.5597 -2.1048 -0.9061 35 1 -1.2934 -4.2680 0.6832 36 1 -0.6041 -4.4479 -0.9642 37 1 0.1928 -5.1379 2.6413 38 1 0.3267 -3.3928 2.3327 39 1 6.2768 -2.9328 4.5511 40 1 4.4201 -8.4118 7.5652 41 1 2.6786 -7.5825 5.7936 42 1 2.8166 -2.4196 2.3002 43 1 4.1007 -3.6022 2.6690 44 1 3.9354 -3.0605 0.2162 45 1 3.6839 -4.7816 0.5742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036760446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:13 Heat of formation + Delta-G solvation = 121.638140 kcal Electronic energy + Delta-G solvation = -30528.065434 eV Core-core repulsion = 26548.720466 eV Total energy + Delta-G solvation = -3979.344968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.13238 -40.06174 -38.86959 -38.26368 -35.49693 -34.80877 -32.75348 -31.61834 -30.68832 -29.52148 -29.07980 -27.69735 -26.11687 -24.85297 -23.91264 -23.51100 -22.46552 -21.42184 -20.25686 -19.94772 -18.80655 -18.43705 -17.87015 -16.92085 -16.44692 -16.09645 -15.98112 -15.89508 -15.27279 -14.78764 -14.61489 -14.31495 -13.92488 -13.75111 -13.31014 -13.14815 -13.00070 -12.88728 -12.60158 -12.43179 -12.11934 -11.82385 -11.54087 -11.44025 -11.17198 -11.05905 -10.85507 -10.72114 -10.35526 -10.15471 -10.07722 -9.88914 -9.84130 -9.63421 -9.61312 -9.17504 -8.77815 -8.61520 -8.23073 -8.01597 -6.82063 -5.72657 -3.04916 -0.45529 1.15117 1.93464 2.56585 2.97837 3.21570 3.36530 3.41019 3.44868 3.48973 3.58934 3.91730 4.28713 4.47081 4.57131 4.69293 5.04492 5.22329 5.29233 5.35096 5.42150 5.57125 5.59209 5.77667 5.82325 5.88141 5.96995 6.08849 6.11824 6.15301 6.19767 6.30234 6.37697 6.38984 6.46202 6.51567 6.69468 6.72111 6.82499 6.82727 6.92952 6.99890 7.21887 7.56200 7.60850 7.71279 7.73809 7.81146 8.23373 8.24264 9.19814 9.82251 10.50226 11.39603 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.003586 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.488726 B = 7806.910832 C = 9097.526814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.221 4.221 8 H 0.080 0.920 9 N -0.594 5.594 10 C 0.176 3.824 11 C -0.143 4.143 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.125 3.875 15 N -0.572 5.572 16 C 0.559 3.441 17 O -0.528 6.528 18 C 0.207 3.793 19 N -0.501 5.501 20 C 0.347 3.653 21 N -0.519 5.519 22 H 0.427 0.573 23 C 0.252 3.748 24 N -0.519 5.519 25 C 0.056 3.944 26 C -0.192 4.192 27 C -0.155 4.155 28 C 0.080 3.920 29 C -0.129 4.129 30 C 0.169 3.831 31 H 0.017 0.983 32 H 0.250 0.750 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.223 0.777 40 H 0.166 0.834 41 H 0.153 0.847 42 H 0.087 0.913 43 H 0.133 0.867 44 H 0.074 0.926 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.438 -8.906 8.910 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.349 4.349 8 H 0.097 0.903 9 N -0.320 5.320 10 C 0.051 3.949 11 C -0.182 4.182 12 C -0.136 4.136 13 H 0.094 0.906 14 C 0.003 3.997 15 N -0.302 5.302 16 C 0.343 3.657 17 O -0.405 6.405 18 C 0.073 3.927 19 N -0.223 5.223 20 C 0.065 3.935 21 N -0.123 5.123 22 H 0.266 0.734 23 C -0.002 4.002 24 N -0.240 5.240 25 C -0.086 4.086 26 C -0.216 4.216 27 C -0.168 4.168 28 C -0.042 4.042 29 C -0.168 4.168 30 C 0.061 3.939 31 H 0.034 0.966 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.239 0.761 40 H 0.183 0.817 41 H 0.170 0.830 42 H 0.105 0.895 43 H 0.149 0.851 44 H 0.093 0.907 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.386 -8.814 9.151 17.061 hybrid contribution 0.328 0.741 0.014 0.810 sum 11.713 -8.073 9.165 16.923 Atomic orbital electron populations 1.69965 1.04851 1.24781 1.57179 1.24770 0.95619 0.97490 1.02565 0.86125 0.78696 0.84225 0.77181 1.20538 1.21954 1.21942 1.19000 0.90391 0.82154 1.43333 0.90273 1.44337 1.01456 0.99432 1.86732 1.21243 0.84362 0.88281 1.00985 1.23052 0.95924 0.99730 0.99486 1.22553 0.97962 0.98583 0.94466 0.90618 1.21542 0.82264 1.03064 0.92831 1.47996 1.13613 1.37952 1.30594 1.17798 0.84624 0.82153 0.81086 1.90743 1.49756 1.33062 1.66919 1.21455 0.92772 0.87931 0.90515 1.68147 1.04690 1.22663 1.26757 1.25171 0.92503 0.92416 0.83406 1.41840 1.20765 1.18542 1.31112 0.73420 1.20523 0.90803 0.91086 0.97787 1.69510 1.28476 1.03979 1.22027 1.22644 0.89689 0.98128 0.98153 1.21590 1.02442 0.96590 1.00940 1.20819 0.96269 0.99496 1.00191 1.22951 0.93857 0.94261 0.93111 1.21621 0.98799 1.00325 0.96046 1.20299 0.91021 0.87029 0.95523 0.96592 0.93902 0.93535 0.93997 0.92025 0.92208 0.90255 0.89877 0.76129 0.81654 0.82968 0.89476 0.85077 0.90726 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.87 10.38 55.49 0.58 -25.29 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.22 -5.58 8.94 -15.06 -0.13 -5.71 16 8 H 0.08 1.91 6.71 -52.49 -0.35 1.56 16 9 N -0.59 -13.83 3.08 -164.47 -0.51 -14.34 16 10 C 0.18 4.05 4.62 -2.75 -0.01 4.03 16 11 C -0.14 -2.60 6.32 -24.61 -0.16 -2.76 16 12 C -0.12 -2.03 3.78 -88.89 -0.34 -2.36 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.12 2.23 5.43 -4.17 -0.02 2.21 16 15 N -0.57 -9.77 2.94 -174.11 -0.51 -10.28 16 16 C 0.56 9.53 7.68 -11.97 -0.09 9.44 16 17 O -0.53 -10.07 14.92 5.41 0.08 -9.99 16 18 C 0.21 2.99 6.67 -82.36 -0.55 2.44 16 19 N -0.50 -5.63 6.20 -10.67 -0.07 -5.70 16 20 C 0.35 2.22 12.24 -91.00 -1.11 1.11 16 21 N -0.52 -3.56 5.32 -12.02 -0.06 -3.62 16 22 H 0.43 1.24 8.93 -40.82 -0.36 0.88 16 23 C 0.25 3.06 8.71 -154.20 -1.34 1.72 16 24 N -0.52 -7.04 11.16 -10.91 -0.12 -7.16 16 25 C 0.06 0.73 11.70 -17.59 -0.21 0.52 16 26 C -0.19 -2.76 10.26 -39.45 -0.40 -3.17 16 27 C -0.16 -2.25 6.19 -104.65 -0.65 -2.90 16 28 C 0.08 1.30 5.89 -3.67 -0.02 1.27 16 29 C -0.13 -2.17 5.18 -27.63 -0.14 -2.31 16 30 C 0.17 3.28 2.89 -68.34 -0.20 3.08 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.05 1.19 6.94 -51.93 -0.36 0.83 16 34 H 0.04 1.08 7.56 -51.93 -0.39 0.69 16 35 H 0.06 1.02 7.97 -51.93 -0.41 0.61 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.39 7.01 -51.93 -0.36 1.03 16 38 H 0.08 1.67 6.73 -51.93 -0.35 1.32 16 39 H 0.22 0.18 8.06 -52.49 -0.42 -0.25 16 40 H 0.17 1.63 8.06 -52.48 -0.42 1.20 16 41 H 0.15 2.21 7.40 -52.48 -0.39 1.83 16 42 H 0.09 1.66 7.39 -51.93 -0.38 1.28 16 43 H 0.13 1.81 3.99 -80.72 -0.32 1.49 16 44 H 0.07 1.27 7.05 -51.93 -0.37 0.91 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -34.45 351.55 -11.55 -45.99 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.73 Total: 2.84 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -5.48 Total: 6.31 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.69 Total: -66.39 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.45 -11.55 -45.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036760446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.631 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds