Wall clock time and date at job start Sat Apr 11 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00274 * 2 1 4 4 H 1.48500 * 109.47087 * 274.98523 * 3 2 1 5 5 H 1.48502 * 109.46951 * 34.98965 * 3 2 1 6 6 H 1.48502 * 109.46840 * 154.98589 * 3 2 1 7 7 C 1.38817 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00054 * 172.48643 * 7 2 1 9 9 N 1.36939 * 119.99643 * 352.48883 * 7 2 1 10 10 C 1.48157 * 126.40904 * 4.02064 * 9 7 2 11 11 C 1.55282 * 107.04735 * 184.91591 * 10 9 7 12 12 C 1.53745 * 101.84232 * 22.47809 * 11 10 9 13 13 H 1.09002 * 111.30436 * 79.83878 * 12 11 10 14 14 C 1.52243 * 114.75360 * 207.23575 * 12 11 10 15 15 N 1.47724 * 106.35754 * 169.60324 * 14 12 11 16 16 C 1.34771 * 119.68183 * 127.94282 * 15 14 12 17 17 O 1.21589 * 119.99732 * 176.70207 * 16 15 14 18 18 C 1.47580 * 120.00451 * 356.97800 * 16 15 14 19 19 C 1.41514 * 120.56411 * 33.61732 * 18 16 15 20 20 N 1.30910 * 120.16864 * 179.71686 * 19 18 16 21 21 C 1.34253 * 121.26546 * 0.60690 * 20 19 18 22 22 N 1.32426 * 131.63475 * 179.69952 * 21 20 19 23 23 C 1.33692 * 109.33212 * 179.97438 * 22 21 20 24 24 C 1.34906 * 108.65334 * 359.97438 * 23 22 21 25 25 N 1.37012 * 107.05971 * 359.97438 * 24 23 22 26 26 C 1.35961 * 132.55267 * 180.02562 * 25 24 23 27 27 C 1.46598 * 120.62823 * 308.21713 * 15 14 12 28 28 C 1.53538 * 110.81787 * 47.45842 * 27 15 14 29 29 C 1.45475 * 126.40241 * 184.01617 * 9 7 2 30 30 H 1.09003 * 109.27266 * 266.22167 * 29 9 7 31 31 H 0.97001 * 119.99129 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.91971 * 65.56621 * 10 9 7 33 33 H 1.08999 * 109.91827 * 304.27209 * 10 9 7 34 34 H 1.09000 * 110.95957 * 264.34724 * 11 10 9 35 35 H 1.08999 * 110.96085 * 140.61414 * 11 10 9 36 36 H 1.09003 * 110.06854 * 50.39265 * 14 12 11 37 37 H 1.09000 * 110.06987 * 288.81069 * 14 12 11 38 38 H 1.08007 * 119.91884 * 359.97438 * 19 18 16 39 39 H 1.08002 * 125.67737 * 180.02562 * 23 22 21 40 40 H 1.08006 * 126.47213 * 180.02562 * 24 23 22 41 41 H 1.07996 * 120.58252 * 0.02562 * 26 25 24 42 42 H 1.08996 * 109.25161 * 167.82578 * 27 15 14 43 43 H 1.09000 * 109.25520 * 287.26400 * 27 15 14 44 44 H 1.08996 * 109.96364 * 189.66721 * 28 27 15 45 45 H 1.08999 * 109.78229 * 68.66880 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5045 2.6199 0.8029 6 1 3.5966 1.4119 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0832 -1.2063 -0.1218 9 7 1.3343 -2.3829 0.1561 10 6 -0.1349 -2.5492 0.2506 11 6 -0.4052 -4.0497 0.5452 12 6 0.9321 -4.4967 1.1581 13 1 1.0040 -4.2065 2.2063 14 6 1.2571 -5.9723 0.9717 15 7 2.6629 -6.1450 1.3914 16 6 2.9782 -7.0960 2.2928 17 8 4.1403 -7.2833 2.5975 18 6 1.9137 -7.9142 2.9054 19 6 0.7584 -8.2627 2.1661 20 7 -0.1785 -8.9935 2.7154 21 6 -0.0767 -9.4179 3.9850 22 7 -0.8867 -10.1482 4.7362 23 6 -0.3432 -10.3079 5.9471 24 6 0.8433 -9.6666 5.9756 25 7 1.0240 -9.1006 4.7410 26 6 2.0263 -8.3501 4.2113 27 6 3.7172 -5.2877 0.8414 28 6 3.2994 -3.8110 0.8877 29 6 1.9245 -3.7085 0.2594 30 1 1.9546 -4.1670 -0.7291 31 1 -0.4849 0.8401 -0.0004 32 1 -0.6021 -2.2659 -0.6926 33 1 -0.5268 -1.9350 1.0613 34 1 -0.6144 -4.5961 -0.3744 35 1 -1.2198 -4.1661 1.2600 36 1 1.1425 -6.2512 -0.0758 37 1 0.6029 -6.5812 1.5958 38 1 0.6514 -7.9283 1.1446 39 1 -0.7808 -10.8594 6.7662 40 1 1.5230 -9.6106 6.8131 41 1 2.8944 -8.0973 4.8020 42 1 4.6289 -5.4209 1.4237 43 1 3.9077 -5.5715 -0.1937 44 1 4.0101 -3.2054 0.3254 45 1 3.2603 -3.4710 1.9226 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036772044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:18 Heat of formation + Delta-G solvation = 137.471844 kcal Electronic energy + Delta-G solvation = -29889.631569 eV Core-core repulsion = 25910.973202 eV Total energy + Delta-G solvation = -3978.658367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.41297 -40.78941 -38.73972 -38.05691 -35.61878 -34.92384 -32.81242 -32.60661 -31.04338 -29.73061 -29.61899 -28.24533 -25.63273 -25.31088 -24.39985 -23.27618 -22.51115 -22.10951 -20.46409 -20.16551 -19.43854 -19.04011 -18.14765 -16.93212 -16.76058 -16.60621 -16.19287 -15.72459 -15.38019 -15.11121 -14.62337 -14.49700 -14.36255 -14.20386 -13.83100 -13.57704 -13.37329 -13.17681 -12.93869 -12.64069 -12.32392 -12.15406 -11.74854 -11.62332 -11.51019 -11.03319 -10.90163 -10.82868 -10.75134 -10.53520 -10.20411 -10.16998 -10.01326 -9.98110 -9.71014 -9.65035 -9.44364 -8.77694 -8.65158 -8.56352 -6.91715 -5.79707 -3.11301 -0.04527 0.41591 1.80869 2.14405 2.60599 2.77165 3.16582 3.21635 3.35421 3.41567 3.43096 3.78427 3.90459 4.10890 4.33678 4.43508 4.68313 4.72731 4.82901 4.97410 5.02656 5.12457 5.18477 5.23813 5.33241 5.37281 5.48839 5.63022 5.68250 5.73659 5.81095 5.97999 5.99630 6.03366 6.08602 6.12380 6.23795 6.33913 6.50709 6.51476 6.68104 6.93850 7.08250 7.13519 7.47140 7.52620 7.53992 7.73923 7.83468 8.16870 9.12218 9.76095 10.43196 11.33358 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.002775 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.737002 B =10086.818000 C =10713.450799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.176 3.824 11 C -0.137 4.137 12 C -0.125 4.125 13 H 0.081 0.919 14 C 0.090 3.910 15 N -0.591 5.591 16 C 0.573 3.427 17 O -0.538 6.538 18 C -0.217 4.217 19 C 0.184 3.816 20 N -0.434 5.434 21 C 0.385 3.615 22 N -0.470 5.470 23 C 0.051 3.949 24 C -0.093 4.093 25 N -0.402 5.402 26 C 0.180 3.820 27 C 0.118 3.882 28 C -0.130 4.130 29 C 0.169 3.831 30 H 0.022 0.978 31 H 0.253 0.747 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.203 0.797 39 H 0.191 0.809 40 H 0.191 0.809 41 H 0.187 0.813 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 -18.214 8.301 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.146 4.146 13 H 0.099 0.901 14 C -0.033 4.033 15 N -0.323 5.323 16 C 0.359 3.641 17 O -0.416 6.416 18 C -0.226 4.226 19 C -0.003 4.003 20 N -0.145 5.145 21 C 0.036 3.964 22 N -0.192 5.192 23 C -0.100 4.100 24 C -0.223 4.223 25 N -0.079 5.079 26 C 0.045 3.955 27 C -0.004 4.004 28 C -0.169 4.169 29 C 0.060 3.940 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.219 0.781 39 H 0.208 0.792 40 H 0.208 0.792 41 H 0.204 0.796 42 H 0.109 0.891 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.039 -18.755 7.945 20.470 hybrid contribution 1.824 1.619 0.768 2.557 sum 3.863 -17.136 8.713 19.608 Atomic orbital electron populations 1.69951 1.04938 1.25147 1.56522 1.24805 0.95643 0.97656 1.02109 0.86179 0.78766 0.83796 0.77515 1.21654 1.21661 1.20630 1.18973 0.91138 0.82453 1.43078 0.90330 1.44190 1.01738 1.00565 1.85361 1.21535 0.84065 0.88621 1.00599 1.22738 0.95222 1.00086 0.99500 1.22647 0.98355 0.92660 1.00918 0.90055 1.22714 0.80792 0.98844 1.00907 1.48146 1.09429 1.33058 1.41618 1.17468 0.87181 0.80071 0.79368 1.90810 1.19318 1.68782 1.62684 1.20659 0.99787 1.07005 0.95104 1.24079 0.86320 0.88703 1.01208 1.67915 1.28804 1.12120 1.05671 1.22215 0.84405 0.99689 0.90043 1.70742 1.27238 1.18008 1.03188 1.22700 0.92262 0.99854 0.95218 1.22785 1.03751 1.07614 0.88151 1.44014 1.16530 1.33970 1.13392 1.22459 0.91189 0.87947 0.93914 1.21651 0.89863 0.89996 0.98904 1.21842 0.99260 0.93476 1.02355 1.20638 0.90939 0.87809 0.94579 0.96104 0.93704 0.94186 0.92804 0.92023 0.91975 0.89619 0.88530 0.78082 0.79168 0.79227 0.79575 0.89101 0.91322 0.90215 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.07 10.49 55.49 0.58 -25.49 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 21.40 29.56 -169.99 -5.02 16.38 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.23 -5.97 9.85 -15.06 -0.15 -6.12 16 8 H 0.08 1.98 7.28 -52.49 -0.38 1.60 16 9 N -0.59 -13.94 3.35 -163.09 -0.55 -14.48 16 10 C 0.18 3.97 5.46 -1.92 -0.01 3.95 16 11 C -0.14 -2.24 6.54 -25.13 -0.16 -2.40 16 12 C -0.13 -1.90 2.85 -89.37 -0.26 -2.16 16 13 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 14 C 0.09 1.00 4.38 -3.76 -0.02 0.98 16 15 N -0.59 -7.13 3.00 -173.95 -0.52 -7.65 16 16 C 0.57 7.00 7.42 -12.45 -0.09 6.91 16 17 O -0.54 -7.92 16.17 5.29 0.09 -7.83 16 18 C -0.22 -2.28 5.49 -104.88 -0.58 -2.86 16 19 C 0.18 1.90 8.64 -16.70 -0.14 1.75 16 20 N -0.43 -5.59 10.45 -14.21 -0.15 -5.74 16 21 C 0.38 5.09 8.91 -322.25 -2.87 2.21 16 22 N -0.47 -6.28 11.31 -14.42 -0.16 -6.44 16 23 C 0.05 0.46 11.82 -17.92 -0.21 0.25 16 24 C -0.09 -0.74 11.76 -16.42 -0.19 -0.94 16 25 N -0.40 -4.21 2.94 -63.77 -0.19 -4.40 16 26 C 0.18 1.72 10.67 -15.76 -0.17 1.55 16 27 C 0.12 1.51 6.28 -3.71 -0.02 1.49 16 28 C -0.13 -2.06 5.48 -27.20 -0.15 -2.21 16 29 C 0.17 3.05 2.57 -67.98 -0.17 2.87 16 30 H 0.02 0.39 7.92 -51.93 -0.41 -0.02 16 31 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 32 H 0.04 1.00 7.80 -51.93 -0.40 0.59 16 33 H 0.05 1.37 7.20 -51.93 -0.37 1.00 16 34 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.83 8.06 -51.93 -0.42 0.41 16 37 H 0.10 0.95 3.57 -53.83 -0.19 0.76 16 38 H 0.20 1.58 5.38 -52.48 -0.28 1.30 16 39 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.19 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.19 1.33 8.01 -52.49 -0.42 0.91 16 42 H 0.09 1.18 6.98 -51.93 -0.36 0.82 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.30 7.64 -51.93 -0.40 0.90 16 45 H 0.07 1.16 8.13 -51.93 -0.42 0.73 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -33.84 357.12 -11.57 -45.41 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.74 Total: -0.19 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -5.29 Total: 5.05 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.99 Total: -64.20 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.84 -11.57 -45.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036772044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.887 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds