Wall clock time and date at job start Sat Apr 11 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00274 * 2 1 4 4 H 1.48500 * 109.47087 * 274.98523 * 3 2 1 5 5 H 1.48502 * 109.46951 * 34.98965 * 3 2 1 6 6 H 1.48502 * 109.46840 * 154.98589 * 3 2 1 7 7 C 1.38817 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00054 * 172.48643 * 7 2 1 9 9 N 1.36939 * 119.99643 * 352.48883 * 7 2 1 10 10 C 1.48157 * 126.40904 * 4.02064 * 9 7 2 11 11 C 1.55282 * 107.04735 * 184.91591 * 10 9 7 12 12 C 1.53745 * 101.84232 * 22.47809 * 11 10 9 13 13 H 1.09002 * 111.30436 * 79.83878 * 12 11 10 14 14 C 1.52243 * 114.75360 * 207.23575 * 12 11 10 15 15 N 1.47724 * 106.35754 * 169.60324 * 14 12 11 16 16 C 1.34771 * 119.68183 * 127.94282 * 15 14 12 17 17 O 1.21589 * 119.99732 * 176.70207 * 16 15 14 18 18 C 1.47580 * 120.00451 * 356.97800 * 16 15 14 19 19 C 1.41514 * 120.56411 * 33.61732 * 18 16 15 20 20 N 1.30910 * 120.16864 * 179.71686 * 19 18 16 21 21 C 1.34253 * 121.26546 * 0.60690 * 20 19 18 22 22 N 1.32426 * 131.63475 * 179.69952 * 21 20 19 23 23 C 1.33692 * 109.33212 * 179.97438 * 22 21 20 24 24 C 1.34906 * 108.65334 * 359.97438 * 23 22 21 25 25 N 1.37012 * 107.05971 * 359.97438 * 24 23 22 26 26 C 1.35961 * 132.55267 * 180.02562 * 25 24 23 27 27 C 1.46598 * 120.62823 * 308.21713 * 15 14 12 28 28 C 1.53538 * 110.81787 * 47.45842 * 27 15 14 29 29 C 1.45475 * 126.40241 * 184.01617 * 9 7 2 30 30 H 1.09003 * 109.27266 * 266.22167 * 29 9 7 31 31 H 0.97001 * 119.99129 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.91971 * 65.56621 * 10 9 7 33 33 H 1.08999 * 109.91827 * 304.27209 * 10 9 7 34 34 H 1.09000 * 110.95957 * 264.34724 * 11 10 9 35 35 H 1.08999 * 110.96085 * 140.61414 * 11 10 9 36 36 H 1.09003 * 110.06854 * 50.39265 * 14 12 11 37 37 H 1.09000 * 110.06987 * 288.81069 * 14 12 11 38 38 H 1.08007 * 119.91884 * 359.97438 * 19 18 16 39 39 H 1.08002 * 125.67737 * 180.02562 * 23 22 21 40 40 H 1.08006 * 126.47213 * 180.02562 * 24 23 22 41 41 H 1.07996 * 120.58252 * 0.02562 * 26 25 24 42 42 H 1.08996 * 109.25161 * 167.82578 * 27 15 14 43 43 H 1.09000 * 109.25520 * 287.26400 * 27 15 14 44 44 H 1.08996 * 109.96364 * 189.66721 * 28 27 15 45 45 H 1.08999 * 109.78229 * 68.66880 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5045 2.6199 0.8029 6 1 3.5966 1.4119 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0832 -1.2063 -0.1218 9 7 1.3343 -2.3829 0.1561 10 6 -0.1349 -2.5492 0.2506 11 6 -0.4052 -4.0497 0.5452 12 6 0.9321 -4.4967 1.1581 13 1 1.0040 -4.2065 2.2063 14 6 1.2571 -5.9723 0.9717 15 7 2.6629 -6.1450 1.3914 16 6 2.9782 -7.0960 2.2928 17 8 4.1403 -7.2833 2.5975 18 6 1.9137 -7.9142 2.9054 19 6 0.7584 -8.2627 2.1661 20 7 -0.1785 -8.9935 2.7154 21 6 -0.0767 -9.4179 3.9850 22 7 -0.8867 -10.1482 4.7362 23 6 -0.3432 -10.3079 5.9471 24 6 0.8433 -9.6666 5.9756 25 7 1.0240 -9.1006 4.7410 26 6 2.0263 -8.3501 4.2113 27 6 3.7172 -5.2877 0.8414 28 6 3.2994 -3.8110 0.8877 29 6 1.9245 -3.7085 0.2594 30 1 1.9546 -4.1670 -0.7291 31 1 -0.4849 0.8401 -0.0004 32 1 -0.6021 -2.2659 -0.6926 33 1 -0.5268 -1.9350 1.0613 34 1 -0.6144 -4.5961 -0.3744 35 1 -1.2198 -4.1661 1.2600 36 1 1.1425 -6.2512 -0.0758 37 1 0.6029 -6.5812 1.5958 38 1 0.6514 -7.9283 1.1446 39 1 -0.7808 -10.8594 6.7662 40 1 1.5230 -9.6106 6.8131 41 1 2.8944 -8.0973 4.8020 42 1 4.6289 -5.4209 1.4237 43 1 3.9077 -5.5715 -0.1937 44 1 4.0101 -3.2054 0.3254 45 1 3.2603 -3.4710 1.9226 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036772044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:17 Heat of formation + Delta-G solvation = 117.835133 kcal Electronic energy + Delta-G solvation = -29890.483080 eV Core-core repulsion = 25910.973202 eV Total energy + Delta-G solvation = -3979.509879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.15570 -41.80662 -39.95992 -38.94873 -36.89624 -35.74118 -34.41786 -33.85585 -32.12756 -31.19512 -30.43851 -29.59785 -26.91645 -26.21748 -25.79169 -24.36781 -23.61282 -22.91268 -21.90130 -21.46624 -20.60403 -19.89876 -19.00454 -18.45822 -17.64528 -17.54489 -17.23990 -16.80824 -16.61855 -16.37798 -15.98701 -15.69190 -15.22066 -15.13770 -14.87495 -14.76049 -14.68883 -14.30692 -14.02443 -13.87765 -13.63625 -13.21195 -13.09095 -13.02047 -12.88946 -12.71928 -12.43541 -12.08216 -12.03570 -11.91076 -11.67845 -11.57675 -11.44818 -11.37046 -10.94819 -10.83245 -10.65302 -10.30346 -9.78857 -9.29210 -8.84710 -7.84246 -5.15539 -0.78696 -0.33855 1.06507 1.39554 1.45848 1.46838 1.55455 1.74757 1.89008 2.38696 2.46346 2.51216 2.97076 3.21684 3.34833 3.35035 3.45589 3.67797 3.79291 3.89555 3.98981 4.11659 4.20299 4.26756 4.29319 4.34901 4.38185 4.47207 4.52148 4.57069 4.69559 4.79569 4.88032 4.92200 4.95005 5.04315 5.13960 5.22383 5.30151 5.44254 5.48162 5.53153 5.58279 5.70589 5.80186 6.17354 6.23048 6.32604 6.78208 6.88710 7.11583 7.82419 8.49971 9.28081 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.002775 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.737002 B =10086.818000 C =10713.450799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.228 4.228 8 H 0.085 0.915 9 N -0.616 5.616 10 C 0.179 3.821 11 C -0.120 4.120 12 C -0.110 4.110 13 H 0.065 0.935 14 C 0.099 3.901 15 N -0.592 5.592 16 C 0.582 3.418 17 O -0.563 6.563 18 C -0.228 4.228 19 C 0.189 3.811 20 N -0.463 5.463 21 C 0.352 3.648 22 N -0.510 5.510 23 C 0.036 3.964 24 C -0.076 4.076 25 N -0.406 5.406 26 C 0.191 3.809 27 C 0.128 3.872 28 C -0.122 4.122 29 C 0.156 3.844 30 H 0.031 0.969 31 H 0.244 0.756 32 H 0.004 0.996 33 H 0.012 0.988 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.225 0.775 39 H 0.223 0.777 40 H 0.234 0.766 41 H 0.212 0.788 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.500 -20.494 9.299 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.797 3.203 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.357 4.357 8 H 0.103 0.897 9 N -0.341 5.341 10 C 0.054 3.946 11 C -0.159 4.159 12 C -0.130 4.130 13 H 0.083 0.917 14 C -0.023 4.023 15 N -0.322 5.322 16 C 0.370 3.630 17 O -0.443 6.443 18 C -0.237 4.237 19 C 0.002 3.998 20 N -0.175 5.175 21 C 0.004 3.996 22 N -0.233 5.233 23 C -0.113 4.113 24 C -0.205 4.205 25 N -0.084 5.084 26 C 0.056 3.944 27 C 0.006 3.994 28 C -0.161 4.161 29 C 0.049 3.951 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.022 0.978 33 H 0.031 0.969 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.241 0.759 39 H 0.240 0.760 40 H 0.250 0.750 41 H 0.229 0.771 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.090 0.910 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.470 -21.080 8.955 23.165 hybrid contribution 1.413 2.267 0.538 2.725 sum 4.882 -18.814 9.493 21.631 Atomic orbital electron populations 1.70168 1.06251 1.24999 1.58612 1.25567 0.96434 1.00765 1.03301 0.85217 0.77959 0.79999 0.77155 1.21628 1.22559 1.19291 1.19356 0.91638 0.83733 1.40949 0.89746 1.44482 1.02501 1.01916 1.85175 1.21323 0.83639 0.92396 0.97228 1.22592 0.96467 0.95540 1.01289 1.22479 0.96358 0.95084 0.99125 0.91696 1.22778 0.80589 0.95778 1.03132 1.48121 1.09494 1.32941 1.41689 1.17535 0.87044 0.79784 0.78667 1.90804 1.20486 1.69625 1.63360 1.20495 0.99595 1.07785 0.95796 1.24379 0.85633 0.87918 1.01835 1.67896 1.29973 1.13418 1.06187 1.22342 0.85601 1.00953 0.90698 1.70675 1.28723 1.18929 1.05016 1.23369 0.92826 1.00332 0.94784 1.23583 1.03683 1.05223 0.87988 1.44146 1.16130 1.34134 1.13958 1.22844 0.91219 0.86451 0.93879 1.21502 0.89953 0.87791 1.00159 1.21730 0.97786 0.95847 1.00748 1.20921 0.92834 0.85606 0.95762 0.95156 0.94660 0.97812 0.96934 0.89401 0.90377 0.86836 0.86591 0.75929 0.76045 0.75001 0.77129 0.89021 0.89417 0.91021 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.48 10.49 21.65 0.23 -56.25 16 2 C -0.07 -3.78 5.48 84.86 0.46 -3.32 16 3 Si 0.97 45.08 29.56 68.60 2.03 47.11 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.23 -12.12 9.85 84.03 0.83 -11.30 16 8 H 0.08 4.27 7.28 -2.91 -0.02 4.25 16 9 N -0.62 -29.39 3.35 -669.91 -2.24 -31.63 16 10 C 0.18 8.33 5.46 86.84 0.47 8.80 16 11 C -0.12 -3.78 6.54 31.63 0.21 -3.57 16 12 C -0.11 -3.14 2.85 -9.98 -0.03 -3.17 16 13 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 14 C 0.10 1.87 4.38 85.89 0.38 2.24 16 15 N -0.59 -12.50 3.00 -822.53 -2.47 -14.98 16 16 C 0.58 12.58 7.42 86.71 0.64 13.22 16 17 O -0.56 -15.14 16.17 -4.00 -0.06 -15.21 16 18 C -0.23 -4.18 5.49 -20.03 -0.11 -4.29 16 19 C 0.19 3.43 8.64 85.64 0.74 4.17 16 20 N -0.46 -11.26 10.45 -198.87 -2.08 -13.34 16 21 C 0.35 8.84 8.91 261.29 2.33 11.17 16 22 N -0.51 -13.11 11.31 -199.52 -2.26 -15.37 16 23 C 0.04 0.57 11.82 83.64 0.99 1.56 16 24 C -0.08 -0.96 11.76 83.12 0.98 0.02 16 25 N -0.41 -7.48 2.94 -355.66 -1.04 -8.52 16 26 C 0.19 3.09 10.67 84.03 0.90 3.98 16 27 C 0.13 2.97 6.28 86.54 0.54 3.51 16 28 C -0.12 -3.73 5.48 30.29 0.17 -3.56 16 29 C 0.16 5.45 2.57 45.51 0.12 5.57 16 30 H 0.03 1.05 7.92 -2.39 -0.02 1.03 16 31 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.00 0.19 7.80 -2.39 -0.02 0.17 16 33 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 34 H 0.09 2.33 8.11 -2.39 -0.02 2.31 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.11 1.64 8.06 -2.39 -0.02 1.62 16 37 H 0.12 1.86 3.57 -4.18 -0.01 1.84 16 38 H 0.22 2.73 5.38 -2.91 -0.02 2.71 16 39 H 0.22 1.66 8.06 -2.91 -0.02 1.63 16 40 H 0.23 0.68 8.06 -2.91 -0.02 0.66 16 41 H 0.21 2.24 8.01 -2.91 -0.02 2.22 16 42 H 0.09 2.18 6.98 -2.39 -0.02 2.16 16 43 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 44 H 0.07 2.29 7.64 -2.39 -0.02 2.27 16 45 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 Total: -1.00 -78.39 357.12 2.73 -75.66 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.02 Total: 7.50 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 9.61 Total: 25.04 kcal Atomic # 7 Polarization: -130.23 SS G_CDS: -9.87 Total: -140.10 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.06 Total: -15.21 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -78.39 2.73 -75.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036772044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.495 kcal (2) G-P(sol) polarization free energy of solvation -78.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds