Wall clock time and date at job start Sat Apr 11 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99881 * 2 1 4 4 H 1.48497 * 109.46878 * 273.26064 * 3 2 1 5 5 H 1.48496 * 109.47061 * 33.25551 * 3 2 1 6 6 H 1.48498 * 109.47091 * 153.26004 * 3 2 1 7 7 C 1.38813 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99965 * 187.07302 * 7 2 1 9 9 N 1.36935 * 119.99907 * 7.07107 * 7 2 1 10 10 C 1.47738 * 125.97338 * 5.54404 * 9 7 2 11 11 C 1.55072 * 104.87431 * 157.70585 * 10 9 7 12 12 C 1.56006 * 101.16985 * 36.82552 * 11 10 9 13 13 H 1.09001 * 110.86220 * 204.44113 * 12 11 10 14 14 C 1.52043 * 107.47164 * 83.33342 * 12 11 10 15 15 N 1.46120 * 111.67191 * 208.67002 * 14 12 11 16 16 C 1.34781 * 120.93000 * 232.42179 * 15 14 12 17 17 O 1.21591 * 119.99965 * 6.23835 * 16 15 14 18 18 C 1.47575 * 119.99884 * 186.23314 * 16 15 14 19 19 C 1.41523 * 120.56769 * 39.60337 * 18 16 15 20 20 N 1.30897 * 120.16516 * 180.02562 * 19 18 16 21 21 C 1.34258 * 121.27630 * 359.97438 * 20 19 18 22 22 N 1.32427 * 131.63317 * 180.02562 * 21 20 19 23 23 C 1.33713 * 109.32218 * 179.27505 * 22 21 20 24 24 C 1.34903 * 108.65101 * 0.61867 * 23 22 21 25 25 N 1.37004 * 107.06151 * 359.47388 * 24 23 22 26 26 C 1.35969 * 132.55597 * 180.02562 * 25 24 23 27 27 C 1.47061 * 118.13510 * 52.69710 * 15 14 12 28 28 C 1.53095 * 107.54638 * 300.89714 * 27 15 14 29 29 C 1.46508 * 125.97209 * 185.51929 * 9 7 2 30 30 H 1.08998 * 106.03003 * 291.67976 * 29 9 7 31 31 H 0.96991 * 119.99763 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.35835 * 38.85405 * 10 9 7 33 33 H 1.09000 * 110.45055 * 276.59852 * 10 9 7 34 34 H 1.08997 * 111.07610 * 278.85385 * 11 10 9 35 35 H 1.09000 * 111.08228 * 154.79711 * 11 10 9 36 36 H 1.08993 * 109.04059 * 88.10236 * 14 12 11 37 37 H 1.09005 * 109.03981 * 329.22996 * 14 12 11 38 38 H 1.07999 * 119.91595 * 0.02562 * 19 18 16 39 39 H 1.07998 * 125.67082 * 180.11614 * 23 22 21 40 40 H 1.08008 * 126.46752 * 179.50685 * 24 23 22 41 41 H 1.08006 * 120.57886 * 359.97438 * 26 25 24 42 42 H 1.09007 * 109.79869 * 60.49054 * 27 15 14 43 43 H 1.09005 * 109.79982 * 181.34307 * 27 15 14 44 44 H 1.08995 * 109.01221 * 291.80394 * 28 27 15 45 45 H 1.09001 * 108.74954 * 173.23598 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4287 2.0862 -1.3978 5 1 1.4838 2.6318 0.7677 6 1 3.5805 1.4213 0.6299 7 6 2.0104 -1.2021 0.0005 8 1 3.0842 -1.2056 0.1157 9 7 1.3335 -2.3836 -0.1449 10 6 -0.1098 -2.5280 -0.4253 11 6 -0.2546 -3.9399 -1.0500 12 6 0.7985 -4.7442 -0.2268 13 1 1.1444 -5.6148 -0.7841 14 6 0.1348 -5.1674 1.0740 15 7 1.1070 -5.3054 2.1560 16 6 1.1739 -6.4355 2.8873 17 8 0.4993 -7.3993 2.5801 18 6 2.0661 -6.5032 4.0609 19 6 2.1994 -5.3932 4.9287 20 7 2.9934 -5.4617 5.9671 21 6 3.6954 -6.5742 6.2355 22 7 4.5432 -6.8658 7.2102 23 6 4.9790 -8.1206 7.0568 24 6 4.4091 -8.6432 5.9514 25 7 3.5928 -7.6770 5.4250 26 6 2.7851 -7.6513 4.3315 27 6 2.0063 -4.1741 2.4286 28 6 2.8020 -3.8985 1.1501 29 6 1.9142 -3.7254 -0.0503 30 1 2.5652 -3.8334 -0.9177 31 1 -0.4849 0.8400 -0.0004 32 1 -0.4371 -1.7653 -1.1318 33 1 -0.6857 -2.4610 0.4978 34 1 0.0018 -3.9280 -2.1094 35 1 -1.2584 -4.3359 -0.8957 36 1 -0.3669 -6.1232 0.9226 37 1 -0.6062 -4.4190 1.3550 38 1 1.6445 -4.4874 4.7337 39 1 5.6779 -8.6282 7.7051 40 1 4.5663 -9.6360 5.5563 41 1 2.7040 -8.5148 3.6878 42 1 1.4218 -3.2948 2.6994 43 1 2.6865 -4.4306 3.2409 44 1 3.4821 -4.7308 0.9687 45 1 3.3869 -2.9895 1.2905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036772045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:21 Heat of formation + Delta-G solvation = 122.213201 kcal Electronic energy + Delta-G solvation = -30098.415183 eV Core-core repulsion = 26119.095152 eV Total energy + Delta-G solvation = -3979.320031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.34889 -40.59760 -38.76829 -37.88657 -35.45090 -34.86804 -33.02624 -31.86059 -31.56761 -29.61896 -29.42516 -27.88711 -25.89330 -25.17824 -24.35312 -23.52164 -22.73192 -22.18844 -20.48159 -20.19086 -19.01930 -18.52794 -17.89567 -16.91872 -16.73710 -16.36429 -16.29340 -15.81622 -15.21080 -15.04363 -14.57258 -14.49422 -14.28517 -14.04145 -13.98700 -13.73209 -13.14777 -13.03518 -12.88954 -12.51282 -12.19473 -12.17492 -11.82747 -11.39920 -11.28575 -11.15906 -10.95712 -10.80192 -10.68984 -10.43985 -10.26600 -10.19221 -10.02504 -9.86403 -9.78342 -9.66047 -9.44379 -8.66627 -8.55640 -8.47838 -6.89028 -5.80698 -3.14007 0.02487 0.49647 1.86578 2.20768 2.66716 2.90387 3.22200 3.29336 3.35205 3.41227 3.42946 3.88176 3.97233 4.24765 4.41261 4.41920 4.78975 4.87523 4.98245 5.02322 5.15713 5.17597 5.24027 5.29391 5.37528 5.46722 5.57173 5.69889 5.72062 5.79935 5.98136 6.05351 6.07101 6.13083 6.16152 6.22814 6.33053 6.44975 6.53764 6.57745 6.78709 6.86174 7.14427 7.35476 7.45263 7.50556 7.58416 7.72979 7.95186 8.19204 9.11920 9.74274 10.41450 11.30689 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.003171 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.015796 B = 8827.885664 C =10131.723274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.592 5.592 10 C 0.168 3.832 11 C -0.143 4.143 12 C -0.104 4.104 13 H 0.073 0.927 14 C 0.123 3.877 15 N -0.588 5.588 16 C 0.574 3.426 17 O -0.540 6.540 18 C -0.211 4.211 19 C 0.200 3.800 20 N -0.435 5.435 21 C 0.385 3.615 22 N -0.471 5.471 23 C 0.050 3.950 24 C -0.095 4.095 25 N -0.401 5.401 26 C 0.174 3.826 27 C 0.102 3.898 28 C -0.135 4.135 29 C 0.171 3.829 30 H 0.013 0.987 31 H 0.253 0.747 32 H 0.078 0.922 33 H 0.023 0.977 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.193 0.807 39 H 0.191 0.809 40 H 0.190 0.810 41 H 0.186 0.814 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.593 -16.900 6.425 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.044 3.956 11 C -0.182 4.182 12 C -0.123 4.123 13 H 0.091 0.909 14 C 0.002 3.998 15 N -0.318 5.318 16 C 0.360 3.640 17 O -0.418 6.418 18 C -0.220 4.220 19 C 0.012 3.988 20 N -0.146 5.146 21 C 0.037 3.963 22 N -0.193 5.193 23 C -0.101 4.101 24 C -0.225 4.225 25 N -0.079 5.079 26 C 0.039 3.961 27 C -0.020 4.020 28 C -0.175 4.175 29 C 0.064 3.936 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.209 0.791 39 H 0.208 0.792 40 H 0.207 0.793 41 H 0.203 0.797 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.721 -16.064 7.643 18.405 hybrid contribution 0.273 -0.274 -1.196 1.257 sum 4.994 -16.337 6.447 18.260 Atomic orbital electron populations 1.69925 1.04893 1.25164 1.56453 1.24767 0.95619 0.97656 1.02080 0.86156 0.78696 0.83655 0.77546 1.21676 1.21737 1.20625 1.18938 0.90770 0.82375 1.43399 0.90529 1.44562 1.05114 0.99171 1.82918 1.21599 0.84979 0.91201 0.97844 1.23312 0.96910 0.98934 0.99089 1.21887 0.97342 0.97629 0.95479 0.90867 1.21343 0.90310 1.02570 0.85607 1.47852 1.36530 1.14701 1.32734 1.17410 0.81865 0.83039 0.81692 1.90804 1.45106 1.35538 1.70386 1.20695 1.04400 0.95424 1.01469 1.23690 0.91517 0.97288 0.86337 1.67886 1.07743 1.20167 1.18777 1.22205 0.99258 0.84220 0.90599 1.70750 1.12447 1.15195 1.20904 1.22688 1.00440 0.90617 0.96387 1.22754 1.02138 0.96513 1.01062 1.44011 1.29418 1.15317 1.19120 1.22435 0.87518 0.99103 0.87065 1.22174 0.92674 0.88737 0.98393 1.21686 0.98618 1.01759 0.95428 1.19561 0.92687 0.86616 0.94779 0.96918 0.93671 0.90426 0.95872 0.91829 0.91850 0.89491 0.90525 0.79063 0.79233 0.79293 0.79706 0.89098 0.90493 0.93141 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.14 10.49 55.49 0.58 -24.56 16 2 C 0.00 -0.12 5.45 -17.43 -0.09 -0.21 16 3 Si 0.91 20.99 29.56 -169.99 -5.02 15.96 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.23 -5.71 9.52 -15.06 -0.14 -5.86 16 8 H 0.08 1.88 7.27 -52.49 -0.38 1.50 16 9 N -0.59 -13.36 3.29 -165.45 -0.54 -13.91 16 10 C 0.17 3.66 5.18 -2.27 -0.01 3.65 16 11 C -0.14 -2.41 6.38 -24.03 -0.15 -2.56 16 12 C -0.10 -1.62 3.45 -89.95 -0.31 -1.93 16 13 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 14 C 0.12 1.81 5.64 -4.73 -0.03 1.78 16 15 N -0.59 -8.07 2.93 -175.27 -0.51 -8.58 16 16 C 0.57 7.65 7.34 -12.45 -0.09 7.55 16 17 O -0.54 -8.46 16.35 5.29 0.09 -8.38 16 18 C -0.21 -2.42 5.19 -104.88 -0.54 -2.96 16 19 C 0.20 2.35 8.61 -16.70 -0.14 2.21 16 20 N -0.43 -6.12 10.45 -13.37 -0.14 -6.26 16 21 C 0.39 5.38 8.91 -322.24 -2.87 2.51 16 22 N -0.47 -6.58 11.31 -14.41 -0.16 -6.75 16 23 C 0.05 0.47 11.82 -17.92 -0.21 0.26 16 24 C -0.09 -0.79 11.76 -16.42 -0.19 -0.98 16 25 N -0.40 -4.41 2.94 -63.76 -0.19 -4.60 16 26 C 0.17 1.74 10.71 -15.76 -0.17 1.57 16 27 C 0.10 1.41 5.16 -3.69 -0.02 1.39 16 28 C -0.13 -2.14 5.62 -28.03 -0.16 -2.29 16 29 C 0.17 3.13 2.70 -69.72 -0.19 2.94 16 30 H 0.01 0.26 8.09 -51.93 -0.42 -0.16 16 31 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.08 1.94 6.68 -51.93 -0.35 1.60 16 33 H 0.02 0.54 7.43 -51.93 -0.39 0.16 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.93 7.94 -51.93 -0.41 0.52 16 36 H 0.09 1.24 6.96 -51.93 -0.36 0.88 16 37 H 0.08 1.20 6.81 -51.93 -0.35 0.84 16 38 H 0.19 1.93 6.57 -52.49 -0.34 1.59 16 39 H 0.19 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.19 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.19 1.37 8.06 -52.48 -0.42 0.94 16 42 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.08 0.92 4.46 -51.93 -0.23 0.68 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.47 6.91 -51.93 -0.36 1.11 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -32.13 356.27 -11.56 -43.68 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.69 Total: 0.94 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -5.33 Total: 7.07 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.97 Total: -64.65 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.13 -11.56 -43.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036772045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.897 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds