Wall clock time and date at job start Sat Apr 11 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00359 * 2 1 4 4 H 1.48497 * 109.47161 * 240.00068 * 3 2 1 5 5 H 1.48497 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47058 * 120.00210 * 3 2 1 7 7 C 1.38817 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99610 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00226 * 0.02562 * 7 2 1 10 10 C 1.48154 * 126.40341 * 359.97180 * 9 7 2 11 11 C 1.55289 * 107.04349 * 175.09751 * 10 9 7 12 12 C 1.53749 * 101.83902 * 337.52256 * 11 10 9 13 13 H 1.08999 * 111.97695 * 280.76039 * 12 11 10 14 14 C 1.52246 * 114.74820 * 152.76725 * 12 11 10 15 15 N 1.47713 * 106.35792 * 190.40573 * 14 12 11 16 16 C 1.34781 * 119.68458 * 232.05311 * 15 14 12 17 17 O 1.21583 * 119.99760 * 356.59095 * 16 15 14 18 18 C 1.47576 * 120.00114 * 176.59037 * 16 15 14 19 19 C 1.41525 * 120.56665 * 227.59937 * 18 16 15 20 20 N 1.30903 * 120.16714 * 179.76399 * 19 18 16 21 21 C 1.34255 * 121.27076 * 0.50352 * 20 19 18 22 22 N 1.32423 * 131.62817 * 179.73924 * 21 20 19 23 23 C 1.33705 * 109.32264 * 180.02562 * 22 21 20 24 24 C 1.34905 * 108.65793 * 359.97438 * 23 22 21 25 25 N 1.37012 * 107.05167 * 359.97438 * 24 23 22 26 26 C 1.35973 * 132.54596 * 180.02562 * 25 24 23 27 27 C 1.47146 * 120.93641 * 51.05552 * 15 14 12 28 28 C 1.53958 * 110.87487 * 313.55377 * 27 15 14 29 29 C 1.45468 * 126.40585 * 179.97438 * 9 7 2 30 30 H 1.09008 * 109.26515 * 93.77213 * 29 9 7 31 31 H 0.97003 * 119.99527 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.92269 * 294.45139 * 10 9 7 33 33 H 1.08998 * 109.91838 * 55.75440 * 10 9 7 34 34 H 1.09001 * 110.95999 * 219.38187 * 11 10 9 35 35 H 1.09002 * 110.95275 * 95.65484 * 11 10 9 36 36 H 1.08998 * 110.06688 * 309.61707 * 14 12 11 37 37 H 1.08997 * 110.06926 * 71.19661 * 14 12 11 38 38 H 1.08003 * 119.91189 * 359.97438 * 19 18 16 39 39 H 1.07999 * 125.67168 * 180.02562 * 23 22 21 40 40 H 1.07997 * 126.47460 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.58477 * 0.02562 * 26 25 24 42 42 H 1.09003 * 109.82657 * 192.70977 * 27 15 14 43 43 H 1.08993 * 108.37987 * 73.45955 * 27 15 14 44 44 H 1.09009 * 109.88166 * 290.68841 * 28 27 15 45 45 H 1.09000 * 109.94004 * 169.64991 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 -0.1469 -2.5533 -0.0017 11 6 -0.4343 -4.0740 -0.1300 12 6 0.8682 -4.5888 -0.7643 13 1 0.9011 -4.4013 -1.8375 14 6 1.2006 -6.0405 -0.4483 15 7 2.5820 -6.2634 -0.9216 16 6 2.8483 -7.3019 -1.7384 17 8 1.9666 -8.0856 -2.0325 18 6 4.2102 -7.4877 -2.2758 19 6 4.4117 -7.7433 -3.6531 20 7 5.6234 -7.9023 -4.1222 21 6 6.6962 -7.8382 -3.3175 22 7 7.9905 -7.9700 -3.5648 23 6 8.6757 -7.8223 -2.4262 24 6 7.8029 -7.5898 -1.4242 25 7 6.5482 -7.5965 -1.9747 26 6 5.3097 -7.4184 -1.4425 27 6 3.6713 -5.3542 -0.5315 28 6 3.2444 -3.8842 -0.6965 29 6 1.9076 -3.7212 -0.0028 30 1 1.9895 -4.0788 1.0237 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5632 -2.1740 0.9315 33 1 -0.5802 -2.0208 -0.8483 34 1 -1.2858 -4.2559 -0.7857 35 1 -0.5953 -4.5242 0.8496 36 1 1.1410 -6.2125 0.6263 37 1 0.5137 -6.7043 -0.9733 38 1 3.5639 -7.8040 -4.3193 39 1 9.7495 -7.8789 -2.3256 40 1 8.0470 -7.4281 -0.3847 41 1 5.1876 -7.2282 -0.3864 42 1 4.5502 -5.5447 -1.1474 43 1 3.9178 -5.5417 0.5135 44 1 3.1442 -3.6439 -1.7551 45 1 3.9836 -3.2286 -0.2362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036772046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:23 Heat of formation + Delta-G solvation = 122.375866 kcal Electronic energy + Delta-G solvation = -29849.185069 eV Core-core repulsion = 25869.872091 eV Total energy + Delta-G solvation = -3979.312978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -43.42167 -40.68046 -38.81832 -37.90733 -35.75802 -34.95778 -32.94567 -31.78693 -31.68981 -29.76130 -29.49523 -28.20750 -25.75424 -24.98270 -24.45917 -23.21356 -22.66176 -22.18990 -20.50436 -20.12618 -19.45073 -18.99005 -18.03273 -17.15083 -16.74995 -16.46146 -16.14401 -15.99622 -15.30808 -15.03983 -14.58206 -14.56050 -14.32335 -14.11580 -13.94985 -13.76438 -13.31513 -13.13580 -12.86253 -12.73088 -12.64370 -12.15958 -11.78323 -11.60071 -11.56394 -11.02668 -10.93898 -10.89755 -10.84300 -10.51839 -10.27276 -10.21354 -10.03497 -9.94821 -9.73901 -9.65202 -9.45759 -8.81664 -8.70914 -8.57634 -6.94102 -5.80417 -3.14347 -0.08399 0.48414 1.81196 2.16744 2.43296 2.75068 3.20201 3.21510 3.33597 3.38277 3.39891 3.73612 3.76754 4.16725 4.38716 4.40522 4.69878 4.73078 4.83298 4.89465 4.97462 5.01625 5.16816 5.21745 5.26756 5.42032 5.44978 5.63439 5.63978 5.71930 5.84943 5.96427 5.98983 6.01853 6.07074 6.08481 6.16086 6.30229 6.46824 6.50611 6.64914 6.91575 7.07361 7.12192 7.45325 7.51952 7.54047 7.72055 7.81175 8.15133 9.09942 9.73525 10.40669 11.31852 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.003080 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.639342 B = 9090.134985 C =10519.224023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.126 4.126 13 H 0.082 0.918 14 C 0.128 3.872 15 N -0.596 5.596 16 C 0.571 3.429 17 O -0.526 6.526 18 C -0.207 4.207 19 C 0.217 3.783 20 N -0.436 5.436 21 C 0.385 3.615 22 N -0.472 5.472 23 C 0.052 3.948 24 C -0.096 4.096 25 N -0.400 5.400 26 C 0.152 3.848 27 C 0.100 3.900 28 C -0.129 4.129 29 C 0.168 3.832 30 H 0.021 0.979 31 H 0.254 0.746 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.191 0.809 39 H 0.191 0.809 40 H 0.191 0.809 41 H 0.184 0.816 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.048 -15.614 0.752 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.146 4.146 13 H 0.100 0.900 14 C 0.007 3.993 15 N -0.328 5.328 16 C 0.356 3.644 17 O -0.403 6.403 18 C -0.216 4.216 19 C 0.029 3.971 20 N -0.146 5.146 21 C 0.037 3.963 22 N -0.194 5.194 23 C -0.099 4.099 24 C -0.225 4.225 25 N -0.077 5.077 26 C 0.017 3.983 27 C -0.023 4.023 28 C -0.169 4.169 29 C 0.059 3.941 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.208 0.792 39 H 0.208 0.792 40 H 0.208 0.792 41 H 0.201 0.799 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.311 -16.075 -0.981 19.123 hybrid contribution 0.109 1.422 1.763 2.267 sum 10.420 -14.653 0.781 17.998 Atomic orbital electron populations 1.69922 1.04908 1.25297 1.56552 1.24794 0.95678 0.97671 1.02057 0.86239 0.78533 0.83335 0.77882 1.21161 1.21539 1.21168 1.18916 0.90267 0.82299 1.44384 0.90489 1.44192 1.01667 0.99367 1.86638 1.21545 0.83876 0.88290 1.01068 1.22705 0.95631 0.99657 0.99351 1.22668 0.98094 0.93003 1.00867 0.90007 1.21736 0.80491 0.97504 0.99547 1.48459 1.10688 1.26342 1.47331 1.17567 0.86257 0.81787 0.78780 1.90833 1.46378 1.43923 1.59125 1.20804 0.94167 1.10258 0.96368 1.23363 0.93862 0.88142 0.91717 1.67896 0.96803 1.16447 1.33492 1.22204 0.93528 1.02885 0.77643 1.70748 0.98315 1.23155 1.27174 1.22699 1.00439 0.99724 0.87018 1.22784 0.81067 1.16946 1.01741 1.44023 1.06375 1.45048 1.12271 1.22745 0.81613 0.93289 1.00640 1.22239 0.88879 0.91201 1.00015 1.21892 0.99801 0.92756 1.02410 1.20635 0.90878 0.87504 0.95083 0.96192 0.93602 0.94284 0.92655 0.91885 0.92219 0.90760 0.88753 0.79178 0.79187 0.79175 0.79869 0.90556 0.91117 0.91137 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.99 10.44 55.49 0.58 -25.41 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -5.97 9.86 -15.06 -0.15 -6.12 16 8 H 0.08 1.90 7.18 -52.48 -0.38 1.52 16 9 N -0.59 -13.87 3.35 -163.13 -0.55 -14.42 16 10 C 0.18 3.99 5.45 -1.92 -0.01 3.98 16 11 C -0.13 -2.27 6.54 -25.13 -0.16 -2.43 16 12 C -0.13 -1.98 2.86 -89.38 -0.26 -2.24 16 13 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 14 C 0.13 1.64 5.96 -3.76 -0.02 1.62 16 15 N -0.60 -7.00 3.03 -173.26 -0.52 -7.52 16 16 C 0.57 6.86 7.26 -12.45 -0.09 6.77 16 17 O -0.53 -7.83 16.40 5.29 0.09 -7.74 16 18 C -0.21 -2.14 5.00 -104.87 -0.52 -2.66 16 19 C 0.22 2.37 10.99 -16.70 -0.18 2.19 16 20 N -0.44 -5.75 10.45 -13.37 -0.14 -5.89 16 21 C 0.39 5.09 8.91 -322.27 -2.87 2.21 16 22 N -0.47 -6.30 11.31 -14.42 -0.16 -6.47 16 23 C 0.05 0.47 11.82 -17.92 -0.21 0.26 16 24 C -0.10 -0.74 11.77 -16.42 -0.19 -0.93 16 25 N -0.40 -4.02 2.94 -63.77 -0.19 -4.20 16 26 C 0.15 1.31 8.40 -15.75 -0.13 1.18 16 27 C 0.10 1.05 4.97 -3.19 -0.02 1.04 16 28 C -0.13 -1.92 5.46 -26.99 -0.15 -2.07 16 29 C 0.17 2.99 2.57 -68.01 -0.17 2.82 16 30 H 0.02 0.37 7.93 -51.92 -0.41 -0.04 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.04 0.98 7.77 -51.93 -0.40 0.57 16 33 H 0.06 1.41 7.21 -51.93 -0.37 1.04 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 36 H 0.07 0.87 8.08 -51.93 -0.42 0.46 16 37 H 0.09 1.23 7.02 -51.93 -0.36 0.87 16 38 H 0.19 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.19 0.70 8.06 -52.49 -0.42 0.27 16 41 H 0.18 1.01 6.86 -52.49 -0.36 0.65 16 42 H 0.08 0.70 4.67 -51.93 -0.24 0.45 16 43 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 44 H 0.07 1.15 8.11 -51.92 -0.42 0.73 16 45 H 0.08 1.20 7.59 -51.93 -0.39 0.81 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -33.79 359.45 -11.60 -45.39 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.86 Total: -0.75 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -5.24 Total: 5.38 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.98 Total: -63.92 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.09 Total: -7.74 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.79 -11.60 -45.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036772046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.768 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds