Wall clock time and date at job start Sat Apr 11 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00359 * 2 1 4 4 H 1.48497 * 109.47161 * 240.00068 * 3 2 1 5 5 H 1.48497 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47058 * 120.00210 * 3 2 1 7 7 C 1.38817 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99610 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00226 * 0.02562 * 7 2 1 10 10 C 1.48154 * 126.40341 * 359.97180 * 9 7 2 11 11 C 1.55289 * 107.04349 * 175.09751 * 10 9 7 12 12 C 1.53749 * 101.83902 * 337.52256 * 11 10 9 13 13 H 1.08999 * 111.97695 * 280.76039 * 12 11 10 14 14 C 1.52246 * 114.74820 * 152.76725 * 12 11 10 15 15 N 1.47713 * 106.35792 * 190.40573 * 14 12 11 16 16 C 1.34781 * 119.68458 * 232.05311 * 15 14 12 17 17 O 1.21583 * 119.99760 * 356.59095 * 16 15 14 18 18 C 1.47576 * 120.00114 * 176.59037 * 16 15 14 19 19 C 1.41525 * 120.56665 * 227.59937 * 18 16 15 20 20 N 1.30903 * 120.16714 * 179.76399 * 19 18 16 21 21 C 1.34255 * 121.27076 * 0.50352 * 20 19 18 22 22 N 1.32423 * 131.62817 * 179.73924 * 21 20 19 23 23 C 1.33705 * 109.32264 * 180.02562 * 22 21 20 24 24 C 1.34905 * 108.65793 * 359.97438 * 23 22 21 25 25 N 1.37012 * 107.05167 * 359.97438 * 24 23 22 26 26 C 1.35973 * 132.54596 * 180.02562 * 25 24 23 27 27 C 1.47146 * 120.93641 * 51.05552 * 15 14 12 28 28 C 1.53958 * 110.87487 * 313.55377 * 27 15 14 29 29 C 1.45468 * 126.40585 * 179.97438 * 9 7 2 30 30 H 1.09008 * 109.26515 * 93.77213 * 29 9 7 31 31 H 0.97003 * 119.99527 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.92269 * 294.45139 * 10 9 7 33 33 H 1.08998 * 109.91838 * 55.75440 * 10 9 7 34 34 H 1.09001 * 110.95999 * 219.38187 * 11 10 9 35 35 H 1.09002 * 110.95275 * 95.65484 * 11 10 9 36 36 H 1.08998 * 110.06688 * 309.61707 * 14 12 11 37 37 H 1.08997 * 110.06926 * 71.19661 * 14 12 11 38 38 H 1.08003 * 119.91189 * 359.97438 * 19 18 16 39 39 H 1.07999 * 125.67168 * 180.02562 * 23 22 21 40 40 H 1.07997 * 126.47460 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.58477 * 0.02562 * 26 25 24 42 42 H 1.09003 * 109.82657 * 192.70977 * 27 15 14 43 43 H 1.08993 * 108.37987 * 73.45955 * 27 15 14 44 44 H 1.09009 * 109.88166 * 290.68841 * 28 27 15 45 45 H 1.09000 * 109.94004 * 169.64991 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 -0.1469 -2.5533 -0.0017 11 6 -0.4343 -4.0740 -0.1300 12 6 0.8682 -4.5888 -0.7643 13 1 0.9011 -4.4013 -1.8375 14 6 1.2006 -6.0405 -0.4483 15 7 2.5820 -6.2634 -0.9216 16 6 2.8483 -7.3019 -1.7384 17 8 1.9666 -8.0856 -2.0325 18 6 4.2102 -7.4877 -2.2758 19 6 4.4117 -7.7433 -3.6531 20 7 5.6234 -7.9023 -4.1222 21 6 6.6962 -7.8382 -3.3175 22 7 7.9905 -7.9700 -3.5648 23 6 8.6757 -7.8223 -2.4262 24 6 7.8029 -7.5898 -1.4242 25 7 6.5482 -7.5965 -1.9747 26 6 5.3097 -7.4184 -1.4425 27 6 3.6713 -5.3542 -0.5315 28 6 3.2444 -3.8842 -0.6965 29 6 1.9076 -3.7212 -0.0028 30 1 1.9895 -4.0788 1.0237 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5632 -2.1740 0.9315 33 1 -0.5802 -2.0208 -0.8483 34 1 -1.2858 -4.2559 -0.7857 35 1 -0.5953 -4.5242 0.8496 36 1 1.1410 -6.2125 0.6263 37 1 0.5137 -6.7043 -0.9733 38 1 3.5639 -7.8040 -4.3193 39 1 9.7495 -7.8789 -2.3256 40 1 8.0470 -7.4281 -0.3847 41 1 5.1876 -7.2282 -0.3864 42 1 4.5502 -5.5447 -1.1474 43 1 3.9178 -5.5417 0.5135 44 1 3.1442 -3.6439 -1.7551 45 1 3.9836 -3.2286 -0.2362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036772046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:22 Heat of formation + Delta-G solvation = 102.623503 kcal Electronic energy + Delta-G solvation = -29850.041596 eV Core-core repulsion = 25869.872091 eV Total energy + Delta-G solvation = -3980.169504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.14829 -41.68846 -39.99923 -38.82966 -36.95002 -35.81537 -34.56343 -33.09229 -32.67609 -31.12139 -30.36532 -29.55274 -26.89468 -26.17862 -25.58951 -24.27576 -23.83297 -22.93251 -21.89954 -21.46517 -20.60511 -19.75900 -19.02043 -18.36808 -17.77851 -17.47639 -17.09160 -17.01865 -16.63532 -16.26813 -15.93202 -15.64406 -15.31725 -15.13782 -14.90721 -14.72695 -14.61342 -14.23377 -14.08591 -13.88736 -13.54912 -13.34156 -13.26935 -13.09139 -12.87208 -12.64838 -12.49130 -12.15125 -12.04295 -11.79739 -11.75039 -11.60343 -11.50470 -11.32125 -10.99440 -10.87321 -10.68753 -10.25728 -9.80748 -9.27640 -8.85488 -7.82638 -5.16439 -0.78790 -0.27935 1.10775 1.38389 1.46345 1.48367 1.54397 1.62399 1.90377 2.40115 2.49137 2.51025 2.94799 3.17782 3.36494 3.38318 3.51579 3.73056 3.76332 3.88994 4.00678 4.03183 4.16238 4.20237 4.28148 4.38916 4.41420 4.48413 4.53832 4.65482 4.70656 4.75146 4.84065 4.89650 4.95496 5.03660 5.11139 5.22169 5.32232 5.40355 5.50975 5.52588 5.57059 5.69227 5.79670 6.16641 6.22567 6.35393 6.80951 6.89183 7.10793 7.81780 8.49796 9.28931 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.003080 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.639342 B = 9090.134985 C =10519.224023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.971 3.029 4 H -0.280 1.280 5 H -0.300 1.300 6 H -0.275 1.275 7 C -0.229 4.229 8 H 0.088 0.912 9 N -0.617 5.617 10 C 0.180 3.820 11 C -0.120 4.120 12 C -0.112 4.112 13 H 0.061 0.939 14 C 0.138 3.862 15 N -0.595 5.595 16 C 0.582 3.418 17 O -0.557 6.557 18 C -0.221 4.221 19 C 0.214 3.786 20 N -0.471 5.471 21 C 0.351 3.649 22 N -0.515 5.515 23 C 0.034 3.966 24 C -0.072 4.072 25 N -0.403 5.403 26 C 0.173 3.827 27 C 0.109 3.891 28 C -0.125 4.125 29 C 0.156 3.844 30 H 0.033 0.967 31 H 0.244 0.756 32 H 0.004 0.996 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.199 0.801 39 H 0.222 0.778 40 H 0.240 0.760 41 H 0.225 0.775 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.048 0.952 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.500 -17.296 2.872 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.800 3.200 4 H -0.206 1.206 5 H -0.227 1.227 6 H -0.201 1.201 7 C -0.358 4.358 8 H 0.106 0.894 9 N -0.341 5.341 10 C 0.055 3.945 11 C -0.158 4.158 12 C -0.132 4.132 13 H 0.080 0.920 14 C 0.016 3.984 15 N -0.327 5.327 16 C 0.368 3.632 17 O -0.435 6.435 18 C -0.230 4.230 19 C 0.026 3.974 20 N -0.183 5.183 21 C 0.003 3.997 22 N -0.238 5.238 23 C -0.115 4.115 24 C -0.200 4.200 25 N -0.081 5.081 26 C 0.039 3.961 27 C -0.013 4.013 28 C -0.164 4.164 29 C 0.050 3.950 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.022 0.978 33 H 0.031 0.969 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.216 0.784 39 H 0.238 0.762 40 H 0.256 0.744 41 H 0.242 0.758 42 H 0.114 0.886 43 H 0.125 0.875 44 H 0.067 0.933 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.816 -17.792 1.146 21.957 hybrid contribution -0.564 1.922 1.121 2.295 sum 12.252 -15.870 2.267 20.177 Atomic orbital electron populations 1.70155 1.06316 1.25071 1.58772 1.25590 0.96456 1.00895 1.03299 0.85262 0.77168 0.79404 0.78196 1.20590 1.22670 1.20085 1.19354 0.91013 0.83439 1.41951 0.89429 1.44486 1.02241 1.00934 1.86434 1.21309 0.83788 0.91899 0.97467 1.22563 0.96873 0.95229 1.01178 1.22500 0.96523 0.94959 0.99248 0.92002 1.21607 0.81226 0.94644 1.00885 1.48442 1.10529 1.26409 1.47274 1.17608 0.86429 0.81232 0.77924 1.90825 1.47573 1.45146 1.59993 1.20550 0.93930 1.12251 0.96296 1.23534 0.93564 0.87686 0.92577 1.67836 0.97564 1.18134 1.34736 1.22248 0.93501 1.04770 0.79169 1.70670 0.99168 1.24196 1.29780 1.23381 1.02137 0.99753 0.86252 1.23629 0.79512 1.13598 1.03291 1.44162 1.07532 1.44907 1.11476 1.23256 0.80499 0.90536 1.01826 1.22295 0.88706 0.87732 1.02595 1.21811 0.98009 0.96120 1.00489 1.20924 0.92964 0.85005 0.96155 0.94999 0.94685 0.97800 0.96879 0.90543 0.89871 0.88537 0.88742 0.78424 0.76184 0.74419 0.75823 0.88596 0.87527 0.93338 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.36 10.44 21.65 0.23 -56.13 16 2 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 3 Si 0.97 44.40 29.55 68.60 2.03 46.43 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.23 -11.92 9.86 84.03 0.83 -11.09 16 8 H 0.09 4.26 7.18 -2.91 -0.02 4.24 16 9 N -0.62 -29.00 3.35 -670.02 -2.24 -31.25 16 10 C 0.18 8.44 5.45 86.85 0.47 8.91 16 11 C -0.12 -3.93 6.54 31.63 0.21 -3.72 16 12 C -0.11 -3.35 2.86 -9.99 -0.03 -3.38 16 13 H 0.06 2.11 8.11 -2.39 -0.02 2.09 16 14 C 0.14 3.07 5.96 85.90 0.51 3.58 16 15 N -0.60 -11.81 3.03 -820.34 -2.49 -14.29 16 16 C 0.58 12.37 7.26 86.71 0.63 13.00 16 17 O -0.56 -15.52 16.40 -3.98 -0.07 -15.59 16 18 C -0.22 -4.01 5.00 -20.03 -0.10 -4.11 16 19 C 0.21 4.54 10.99 85.64 0.94 5.48 16 20 N -0.47 -12.45 10.45 -196.22 -2.05 -14.50 16 21 C 0.35 8.89 8.91 261.30 2.33 11.22 16 22 N -0.51 -13.30 11.31 -199.53 -2.26 -15.56 16 23 C 0.03 0.52 11.82 83.64 0.99 1.51 16 24 C -0.07 -0.78 11.77 83.12 0.98 0.20 16 25 N -0.40 -6.74 2.94 -355.67 -1.04 -7.78 16 26 C 0.17 2.25 8.40 84.03 0.71 2.95 16 27 C 0.11 1.81 4.97 86.58 0.43 2.24 16 28 C -0.13 -3.41 5.46 30.42 0.17 -3.25 16 29 C 0.16 5.30 2.57 45.49 0.12 5.42 16 30 H 0.03 1.06 7.93 -2.38 -0.02 1.04 16 31 H 0.24 14.22 8.31 -92.71 -0.77 13.44 16 32 H 0.00 0.20 7.77 -2.39 -0.02 0.18 16 33 H 0.01 0.70 7.21 -2.39 -0.02 0.68 16 34 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.08 2.36 8.12 -2.39 -0.02 2.34 16 36 H 0.10 1.81 8.08 -2.39 -0.02 1.79 16 37 H 0.09 2.20 7.02 -2.39 -0.02 2.18 16 38 H 0.20 3.53 8.06 -2.91 -0.02 3.50 16 39 H 0.22 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.24 0.10 8.06 -2.91 -0.02 0.07 16 41 H 0.23 0.95 6.86 -2.91 -0.02 0.93 16 42 H 0.10 1.28 4.67 -2.39 -0.01 1.27 16 43 H 0.11 1.14 8.11 -2.39 -0.02 1.12 16 44 H 0.05 1.53 8.11 -2.38 -0.02 1.51 16 45 H 0.08 2.15 7.59 -2.39 -0.02 2.13 16 Total: -1.00 -79.83 359.45 2.77 -77.06 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.02 Total: 6.00 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 9.64 Total: 25.61 kcal Atomic # 7 Polarization: -129.66 SS G_CDS: -9.85 Total: -139.51 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.07 Total: -15.59 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -79.83 2.77 -77.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036772046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.685 kcal (2) G-P(sol) polarization free energy of solvation -79.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds