Wall clock time and date at job start Sat Apr 11 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99619 * 2 1 4 4 H 1.48503 * 109.47185 * 239.99586 * 3 2 1 5 5 H 1.48497 * 109.47447 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47121 * 120.00023 * 3 2 1 7 7 C 1.38804 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00460 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.48156 * 126.40448 * 359.97371 * 9 7 2 11 11 C 1.55287 * 107.04340 * 184.94470 * 10 9 7 12 12 C 1.53742 * 101.84218 * 22.47923 * 11 10 9 13 13 H 1.08992 * 111.30474 * 78.95865 * 12 11 10 14 14 C 1.52240 * 114.74613 * 207.23537 * 12 11 10 15 15 N 1.47720 * 106.35853 * 169.60142 * 14 12 11 16 16 C 1.34769 * 119.68648 * 127.94392 * 15 14 12 17 17 O 1.21718 * 119.99996 * 354.54879 * 16 15 14 18 18 C 1.46588 * 120.00376 * 174.54343 * 16 15 14 19 19 C 1.40642 * 126.53670 * 321.23008 * 18 16 15 20 20 N 1.30698 * 108.72585 * 179.84895 * 19 18 16 21 21 N 1.39908 * 109.51884 * 0.41332 * 20 19 18 22 22 C 1.36315 * 132.15996 * 179.71305 * 21 20 19 23 23 C 1.35754 * 119.15279 * 180.02562 * 22 21 20 24 24 C 1.39968 * 119.35568 * 0.02562 * 23 22 21 25 25 N 1.31496 * 120.10800 * 0.02562 * 24 23 22 26 26 C 1.33381 * 120.85258 * 359.97410 * 25 24 23 27 27 C 1.46601 * 120.62897 * 307.95233 * 15 14 12 28 28 C 1.53954 * 110.58629 * 47.81193 * 27 15 14 29 29 C 1.45468 * 126.40320 * 180.02562 * 9 7 2 30 30 H 1.09000 * 109.27062 * 266.19033 * 29 9 7 31 31 H 0.97000 * 120.00329 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.92071 * 65.59253 * 10 9 7 33 33 H 1.09002 * 110.08587 * 304.38152 * 10 9 7 34 34 H 1.09005 * 110.95354 * 264.33958 * 11 10 9 35 35 H 1.09006 * 110.95555 * 140.62007 * 11 10 9 36 36 H 1.09003 * 110.07269 * 288.80967 * 14 12 11 37 37 H 1.08998 * 110.07093 * 50.39193 * 14 12 11 38 38 H 1.08002 * 125.64074 * 359.97438 * 19 18 16 39 39 H 1.07995 * 120.42761 * 0.02562 * 22 21 20 40 40 H 1.07996 * 120.32126 * 180.02562 * 23 22 21 41 41 H 1.08004 * 119.94443 * 179.97438 * 24 23 22 42 42 H 1.08998 * 109.24926 * 287.52238 * 27 15 14 43 43 H 1.09005 * 109.25024 * 168.09353 * 27 15 14 44 44 H 1.09004 * 109.87911 * 189.49100 * 28 27 15 45 45 H 1.08998 * 109.88384 * 68.40794 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1467 -2.5534 -0.0017 11 6 -0.4340 -4.0742 0.1249 12 6 0.8685 -4.5896 0.7587 13 1 0.8919 -4.3934 1.8306 14 6 1.2010 -6.0408 0.4411 15 7 2.5824 -6.2643 0.9144 16 6 2.8486 -7.3036 1.7300 17 8 1.9395 -7.9936 2.1530 18 6 4.2329 -7.6033 2.1076 19 6 5.3644 -7.5193 1.2765 20 7 6.4194 -7.8608 1.9682 21 7 6.0362 -8.1920 3.2724 22 6 6.7484 -8.6087 4.3574 23 6 6.0949 -8.8618 5.5201 24 6 4.7070 -8.6900 5.5785 25 7 4.0468 -8.2877 4.5149 26 6 4.6825 -8.0373 3.3693 27 6 3.6665 -5.3662 0.5054 28 6 3.2476 -3.8956 0.6839 29 6 1.9079 -3.7211 -0.0017 30 1 1.9901 -4.0776 -1.0285 31 1 -0.4850 0.8400 0.0004 32 1 -0.5630 -2.1732 -0.9345 33 1 -0.5832 -2.0214 0.8436 34 1 -0.5950 -4.5234 -0.8552 35 1 -1.2855 -4.2569 0.7804 36 1 0.5140 -6.7054 0.9651 37 1 1.1416 -6.2116 -0.6338 38 1 5.3622 -7.2199 0.2388 39 1 7.8189 -8.7359 4.2930 40 1 6.6405 -9.1924 6.3914 41 1 4.1774 -8.8890 6.4985 42 1 3.9069 -5.5469 -0.5423 43 1 4.5477 -5.5655 1.1153 44 1 3.9878 -3.2408 0.2240 45 1 3.1538 -3.6630 1.7447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036788384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:29 Heat of formation + Delta-G solvation = 131.497153 kcal Electronic energy + Delta-G solvation = -29829.171888 eV Core-core repulsion = 25850.254439 eV Total energy + Delta-G solvation = -3978.917449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.77848 -40.01988 -38.48497 -37.86573 -35.23299 -34.40760 -32.67745 -31.56020 -31.47587 -30.27824 -29.12133 -27.93530 -25.31181 -25.03542 -24.33570 -23.35649 -22.33475 -22.03743 -20.13303 -19.84638 -19.22219 -18.29279 -17.69574 -17.18386 -16.54703 -16.41805 -15.83943 -15.57092 -15.03711 -14.84345 -14.61981 -14.34207 -14.00629 -13.83776 -13.54920 -13.34382 -13.05920 -12.97482 -12.89652 -12.49012 -12.32984 -11.79625 -11.66023 -11.55837 -11.35728 -11.33155 -10.78773 -10.75183 -10.65374 -10.19141 -10.13967 -10.03209 -9.97872 -9.81930 -9.60133 -9.58258 -9.38668 -8.59033 -8.42473 -8.20320 -6.79823 -5.68368 -3.01338 0.05407 0.42341 1.58167 1.94597 2.83231 3.06951 3.41406 3.45215 3.46269 3.46833 3.47147 3.73569 3.93656 4.42297 4.51530 4.59370 4.75414 4.85348 5.02252 5.05482 5.12278 5.21670 5.35315 5.42707 5.52569 5.60039 5.63647 5.69514 5.83563 5.89004 5.96324 6.04275 6.11949 6.23674 6.25626 6.31081 6.44062 6.60442 6.68998 6.71897 6.92959 6.96608 7.14187 7.26252 7.58852 7.63668 7.66774 7.84820 8.28101 8.44954 9.22726 9.86402 10.55072 11.44130 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.002889 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.293141 B = 9690.846117 C =10446.679163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.079 0.921 14 C 0.130 3.870 15 N -0.604 5.604 16 C 0.597 3.403 17 O -0.537 6.537 18 C -0.277 4.277 19 C 0.129 3.871 20 N -0.311 5.311 21 N -0.309 5.309 22 C 0.166 3.834 23 C -0.225 4.225 24 C 0.184 3.816 25 N -0.447 5.447 26 C 0.310 3.690 27 C 0.109 3.891 28 C -0.129 4.129 29 C 0.168 3.832 30 H 0.020 0.980 31 H 0.252 0.748 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.207 0.793 39 H 0.183 0.817 40 H 0.171 0.829 41 H 0.184 0.816 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.321 -19.308 8.422 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.337 5.337 16 C 0.385 3.615 17 O -0.414 6.414 18 C -0.293 4.293 19 C -0.052 4.052 20 N -0.133 5.133 21 N -0.077 5.077 22 C 0.030 3.970 23 C -0.248 4.248 24 C 0.001 3.999 25 N -0.157 5.157 26 C 0.080 3.920 27 C -0.015 4.015 28 C -0.168 4.168 29 C 0.059 3.941 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.224 0.776 39 H 0.200 0.800 40 H 0.188 0.812 41 H 0.201 0.799 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.125 -19.344 8.276 24.798 hybrid contribution 0.678 1.051 0.088 1.254 sum 13.804 -18.293 8.364 24.395 Atomic orbital electron populations 1.69928 1.04870 1.25096 1.57022 1.24782 0.95665 0.97581 1.02423 0.86243 0.78481 0.83470 0.77824 1.21211 1.21649 1.21277 1.18946 0.90305 0.82371 1.43707 0.90484 1.44200 1.01679 0.99467 1.86571 1.21516 0.83897 0.88371 1.00904 1.22713 0.95857 0.99591 0.99307 1.22624 0.97680 0.93408 1.00695 0.90229 1.21592 0.81499 0.97096 0.98959 1.48080 1.09778 1.27137 1.48662 1.16831 0.86329 0.80319 0.78012 1.90789 1.46389 1.50285 1.53931 1.19436 0.95844 1.21918 0.92113 1.24249 0.88125 0.92626 1.00205 1.77608 1.22136 1.27577 0.85960 1.47012 1.07882 1.42761 1.10092 1.22143 0.99509 0.92096 0.83223 1.21930 0.96624 1.07749 0.98547 1.23612 0.91435 0.88304 0.96533 1.68280 1.36609 1.13495 0.97334 1.20339 0.80645 0.96870 0.94188 1.21951 0.89314 0.90519 0.99718 1.21886 0.99456 0.93510 1.01978 1.20625 0.91130 0.87181 0.95137 0.96257 0.93737 0.94422 0.92800 0.92325 0.92069 0.89134 0.91297 0.77629 0.79985 0.81153 0.79902 0.91648 0.90313 0.90618 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 10.44 55.49 0.58 -26.60 16 2 C -0.01 -0.23 5.49 -17.44 -0.10 -0.33 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.23 -6.17 9.88 -15.06 -0.15 -6.32 16 8 H 0.08 2.02 7.21 -52.49 -0.38 1.64 16 9 N -0.59 -14.99 3.35 -163.13 -0.55 -15.53 16 10 C 0.18 4.33 5.45 -1.92 -0.01 4.32 16 11 C -0.14 -2.58 6.54 -25.13 -0.16 -2.75 16 12 C -0.12 -2.29 2.86 -89.38 -0.26 -2.55 16 13 H 0.08 1.63 8.12 -51.93 -0.42 1.21 16 14 C 0.13 2.09 5.97 -3.76 -0.02 2.07 16 15 N -0.60 -9.42 3.00 -174.06 -0.52 -9.94 16 16 C 0.60 10.08 7.54 -12.90 -0.10 9.99 16 17 O -0.54 -10.80 16.44 5.17 0.09 -10.71 16 18 C -0.28 -4.03 5.21 -104.65 -0.54 -4.58 16 19 C 0.13 1.49 9.54 -17.13 -0.16 1.33 16 20 N -0.31 -3.68 12.58 30.76 0.39 -3.29 16 21 N -0.31 -3.45 3.86 -11.97 -0.05 -3.49 16 22 C 0.17 1.08 11.29 -16.45 -0.19 0.89 16 23 C -0.22 -1.02 10.05 -39.82 -0.40 -1.42 16 24 C 0.18 1.36 11.28 -17.05 -0.19 1.17 16 25 N -0.45 -5.85 10.47 -12.00 -0.13 -5.98 16 26 C 0.31 4.31 7.87 -155.84 -1.23 3.09 16 27 C 0.11 1.50 5.09 -3.49 -0.02 1.48 16 28 C -0.13 -2.25 5.48 -26.99 -0.15 -2.40 16 29 C 0.17 3.39 2.57 -68.00 -0.17 3.21 16 30 H 0.02 0.41 7.92 -51.93 -0.41 0.00 16 31 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 33 H 0.05 1.46 7.21 -51.93 -0.37 1.09 16 34 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.51 6.98 -51.93 -0.36 1.15 16 37 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.21 1.72 7.21 -52.49 -0.38 1.35 16 39 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.17 0.04 8.06 -52.49 -0.42 -0.39 16 41 H 0.18 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 43 H 0.08 0.98 4.90 -51.93 -0.25 0.73 16 44 H 0.08 1.31 7.62 -51.93 -0.40 0.92 16 45 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -37.40 361.13 -9.51 -46.91 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.89 Total: -1.07 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -3.85 Total: 7.20 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -0.27 Total: -64.83 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.40 -9.51 -46.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036788384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.403 kcal (2) G-P(sol) polarization free energy of solvation -37.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds