Wall clock time and date at job start Sat Apr 11 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00177 * 2 1 4 4 H 1.48497 * 109.46955 * 269.99956 * 3 2 1 5 5 H 1.48499 * 109.47137 * 29.99847 * 3 2 1 6 6 H 1.48494 * 109.47220 * 149.99768 * 3 2 1 7 7 C 1.38805 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00221 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00375 * 0.02562 * 7 2 1 10 10 C 1.47744 * 125.96577 * 359.97438 * 9 7 2 11 11 C 1.55072 * 104.86973 * 157.70488 * 10 9 7 12 12 C 1.56007 * 101.17198 * 36.82436 * 11 10 9 13 13 H 1.09003 * 110.86156 * 204.43832 * 12 11 10 14 14 C 1.52050 * 107.47045 * 83.32815 * 12 11 10 15 15 N 1.46117 * 111.67038 * 208.66639 * 14 12 11 16 16 C 1.34776 * 120.93233 * 232.42704 * 15 14 12 17 17 O 1.21715 * 119.99823 * 5.41765 * 16 15 14 18 18 C 1.46586 * 120.00048 * 185.69254 * 16 15 14 19 19 C 1.40646 * 126.53884 * 41.85570 * 18 16 15 20 20 N 1.30700 * 108.72652 * 179.81558 * 19 18 16 21 21 N 1.39905 * 109.51386 * 0.45603 * 20 19 18 22 22 C 1.36317 * 132.15636 * 179.70385 * 21 20 19 23 23 C 1.35754 * 119.15869 * 180.02562 * 22 21 20 24 24 C 1.39968 * 119.35037 * 0.02562 * 23 22 21 25 25 N 1.31491 * 120.10885 * 359.97311 * 24 23 22 26 26 C 1.33387 * 120.85435 * 0.04606 * 25 24 23 27 27 C 1.47067 * 118.13246 * 52.70575 * 15 14 12 28 28 C 1.53100 * 107.54399 * 300.89263 * 27 15 14 29 29 C 1.46501 * 125.97704 * 179.97438 * 9 7 2 30 30 H 1.08999 * 106.03336 * 291.67728 * 29 9 7 31 31 H 0.97004 * 119.99729 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.36204 * 38.85391 * 10 9 7 33 33 H 1.08998 * 110.35592 * 276.54880 * 10 9 7 34 34 H 1.08996 * 111.07817 * 278.84825 * 11 10 9 35 35 H 1.09002 * 111.07912 * 154.79511 * 11 10 9 36 36 H 1.09003 * 109.03491 * 88.10594 * 14 12 11 37 37 H 1.08997 * 109.03683 * 329.23723 * 14 12 11 38 38 H 1.08000 * 125.63340 * 0.02562 * 19 18 16 39 39 H 1.08005 * 120.42468 * 359.97438 * 22 21 20 40 40 H 1.07998 * 120.32493 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.94172 * 179.97438 * 24 23 22 42 42 H 1.08999 * 109.80163 * 60.48388 * 27 15 14 43 43 H 1.09004 * 109.79468 * 181.33997 * 27 15 14 44 44 H 1.09003 * 109.01252 * 291.80610 * 28 27 15 45 45 H 1.09000 * 108.82629 * 173.29268 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1439 -2.5417 0.0005 11 6 -0.3955 -3.9623 -0.5681 12 6 0.7996 -4.7515 0.0506 13 1 1.0390 -5.6281 -0.5514 14 6 0.3969 -5.1599 1.4587 15 7 1.5573 -5.2798 2.3385 16 6 1.7687 -6.3998 3.0577 17 8 1.0440 -7.3660 2.9064 18 6 2.8675 -6.4523 4.0265 19 6 3.2454 -5.4340 4.9200 20 7 4.2640 -5.8510 5.6249 21 7 4.6090 -7.1469 5.2263 22 6 5.5852 -8.0027 5.6423 23 6 5.6849 -9.2252 5.0606 24 6 4.7853 -9.5788 4.0483 25 7 3.8540 -8.7319 3.6681 26 6 3.7505 -7.5290 4.2351 27 6 2.4849 -4.1416 2.4218 28 6 3.0222 -3.8799 1.0123 29 6 1.9220 -3.7262 0.0005 30 1 2.3980 -3.8436 -0.9730 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6038 -1.7897 -0.6405 33 1 -0.5331 -2.4652 1.0158 34 1 -0.3445 -3.9634 -1.6568 35 1 -1.3493 -4.3600 -0.2215 36 1 -0.1183 -6.1196 1.4169 37 1 -0.2821 -4.4107 1.8657 38 1 2.7701 -4.4685 5.0111 39 1 6.2710 -7.7115 6.4241 40 1 6.4514 -9.9179 5.3753 41 1 4.8562 -10.5488 3.5787 42 1 1.9568 -3.2609 2.7876 43 1 3.3081 -4.3847 3.0936 44 1 3.6609 -4.7120 0.7157 45 1 3.6184 -2.9676 1.0269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036788385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:32 Heat of formation + Delta-G solvation = 131.947001 kcal Electronic energy + Delta-G solvation = -30178.425452 eV Core-core repulsion = 26199.527510 eV Total energy + Delta-G solvation = -3978.897942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.71752 -39.94653 -38.45613 -37.82228 -34.97983 -34.35494 -32.79975 -31.64829 -31.50285 -30.06075 -29.04549 -27.60397 -25.47258 -25.22503 -24.38032 -23.41464 -22.63470 -22.13996 -20.13970 -19.86689 -18.61487 -17.99015 -17.63590 -17.08154 -16.47896 -16.39968 -15.88826 -15.64129 -15.11962 -14.72970 -14.54214 -14.36034 -13.93121 -13.85903 -13.61228 -13.34360 -12.98921 -12.89715 -12.64704 -12.48280 -12.06902 -11.73417 -11.69049 -11.56581 -11.17956 -11.12416 -10.99289 -10.74003 -10.53355 -10.15493 -10.14338 -10.05567 -9.93041 -9.86130 -9.60043 -9.55067 -9.43806 -8.62294 -8.29820 -8.04126 -6.79000 -5.65790 -3.04925 0.10227 0.47059 1.64324 2.03183 2.88354 3.17069 3.39465 3.44644 3.46469 3.50635 3.54052 3.81898 3.97633 4.46355 4.48558 4.66381 4.84468 4.90727 5.09320 5.15042 5.25280 5.35880 5.39964 5.51165 5.55882 5.58295 5.64659 5.81522 5.90638 5.93020 6.01656 6.11167 6.22589 6.29889 6.38071 6.41326 6.49365 6.64321 6.75586 6.87998 6.99502 7.02484 7.04874 7.30164 7.54003 7.64772 7.81325 7.87600 8.35934 8.54725 9.22530 9.84672 10.51931 11.39767 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.003137 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.460654 B = 8924.575541 C = 9913.222721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.156 3.844 11 C -0.142 4.142 12 C -0.104 4.104 13 H 0.071 0.929 14 C 0.127 3.873 15 N -0.598 5.598 16 C 0.600 3.400 17 O -0.541 6.541 18 C -0.272 4.272 19 C 0.130 3.870 20 N -0.310 5.310 21 N -0.309 5.309 22 C 0.167 3.833 23 C -0.226 4.226 24 C 0.182 3.818 25 N -0.448 5.448 26 C 0.307 3.693 27 C 0.112 3.888 28 C -0.134 4.134 29 C 0.173 3.827 30 H 0.011 0.989 31 H 0.251 0.749 32 H 0.100 0.900 33 H 0.013 0.987 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.208 0.792 39 H 0.183 0.817 40 H 0.170 0.830 41 H 0.183 0.817 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.766 -17.386 10.502 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.031 3.969 11 C -0.181 4.181 12 C -0.124 4.124 13 H 0.090 0.910 14 C 0.005 3.995 15 N -0.329 5.329 16 C 0.387 3.613 17 O -0.419 6.419 18 C -0.288 4.288 19 C -0.051 4.051 20 N -0.132 5.132 21 N -0.078 5.078 22 C 0.031 3.969 23 C -0.250 4.250 24 C -0.001 4.001 25 N -0.158 5.158 26 C 0.076 3.924 27 C -0.011 4.011 28 C -0.174 4.174 29 C 0.065 3.935 30 H 0.028 0.972 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.225 0.775 39 H 0.200 0.800 40 H 0.188 0.812 41 H 0.200 0.800 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.402 -17.255 10.704 22.815 hybrid contribution 0.745 0.936 0.079 1.199 sum 11.148 -16.319 10.783 22.513 Atomic orbital electron populations 1.69841 1.04837 1.24733 1.57448 1.24745 0.95656 0.97531 1.02586 0.86136 0.78523 0.83665 0.77544 1.21717 1.21746 1.20803 1.18971 0.90404 0.82306 1.43028 0.90548 1.44546 1.01783 0.99233 1.86271 1.21915 0.84696 0.91876 0.98384 1.23300 0.95868 0.99015 0.99933 1.21883 0.97455 0.97505 0.95508 0.91034 1.21202 0.86876 1.02200 0.89268 1.47747 1.26706 1.15404 1.43091 1.16747 0.82667 0.82257 0.79593 1.90775 1.47947 1.35150 1.68044 1.19425 1.05756 0.94094 1.09507 1.24257 0.91473 0.98835 0.90499 1.77624 1.20274 0.89983 1.25310 1.47009 1.21964 1.13048 1.25777 1.22136 0.89193 0.87987 0.97598 1.21905 1.04890 0.96873 1.01362 1.23578 0.87037 0.98454 0.91006 1.68256 1.21465 0.99994 1.26100 1.20300 0.91680 0.92209 0.88172 1.21883 0.92444 0.88475 0.98298 1.21649 0.99313 1.01361 0.95106 1.19518 0.91714 0.86536 0.95710 0.97170 0.93794 0.88261 0.96870 0.91961 0.92023 0.89798 0.91237 0.77527 0.80035 0.81229 0.79989 0.90154 0.90703 0.93287 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.16 10.16 55.49 0.56 -25.60 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.55 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.22 -5.79 9.62 -15.06 -0.14 -5.94 16 8 H 0.08 1.96 7.09 -52.49 -0.37 1.59 16 9 N -0.59 -14.42 3.29 -165.47 -0.54 -14.96 16 10 C 0.16 3.67 5.50 -2.26 -0.01 3.65 16 11 C -0.14 -2.69 6.39 -24.03 -0.15 -2.85 16 12 C -0.10 -1.90 3.45 -89.95 -0.31 -2.21 16 13 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 14 C 0.13 2.25 5.64 -4.73 -0.03 2.22 16 15 N -0.60 -10.31 2.93 -175.62 -0.52 -10.82 16 16 C 0.60 10.79 7.56 -12.89 -0.10 10.69 16 17 O -0.54 -11.34 16.52 5.18 0.09 -11.25 16 18 C -0.27 -4.24 5.25 -104.65 -0.55 -4.79 16 19 C 0.13 1.70 9.56 -17.13 -0.16 1.53 16 20 N -0.31 -4.00 12.58 30.77 0.39 -3.61 16 21 N -0.31 -3.66 3.86 -11.97 -0.05 -3.70 16 22 C 0.17 1.16 11.29 -16.45 -0.19 0.98 16 23 C -0.23 -1.10 10.05 -39.82 -0.40 -1.50 16 24 C 0.18 1.37 11.28 -17.05 -0.19 1.18 16 25 N -0.45 -5.96 10.47 -12.00 -0.13 -6.09 16 26 C 0.31 4.44 7.89 -155.84 -1.23 3.21 16 27 C 0.11 1.83 5.78 -3.68 -0.02 1.80 16 28 C -0.13 -2.44 5.62 -28.05 -0.16 -2.59 16 29 C 0.17 3.55 2.69 -69.75 -0.19 3.36 16 30 H 0.01 0.23 8.09 -51.93 -0.42 -0.19 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 32 H 0.10 2.65 6.04 -51.93 -0.31 2.34 16 33 H 0.01 0.33 7.44 -51.93 -0.39 -0.05 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.04 7.94 -51.93 -0.41 0.62 16 36 H 0.08 1.49 6.96 -51.93 -0.36 1.13 16 37 H 0.07 1.27 6.80 -51.93 -0.35 0.92 16 38 H 0.21 2.19 7.41 -52.49 -0.39 1.80 16 39 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.17 0.08 8.06 -52.49 -0.42 -0.34 16 41 H 0.18 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 43 H 0.07 1.07 4.62 -51.93 -0.24 0.83 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.51 6.82 -51.93 -0.35 1.15 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -35.64 358.02 -9.45 -45.09 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.70 Total: 0.60 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -3.93 Total: 8.40 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -0.28 Total: -64.78 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.64 -9.45 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036788385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.033 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds