Wall clock time and date at job start Sat Apr 11 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00259 * 2 1 4 4 H 1.48500 * 109.46794 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47063 * 240.00350 * 3 2 1 6 6 H 1.48496 * 109.47249 * 120.00133 * 3 2 1 7 7 C 1.38809 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00698 * 6.63118 * 7 2 1 9 9 N 1.36937 * 119.99872 * 186.63712 * 7 2 1 10 10 C 1.48160 * 126.40782 * 18.28397 * 9 7 2 11 11 C 1.55289 * 107.04550 * 175.04300 * 10 9 7 12 12 C 1.53741 * 101.84237 * 337.52026 * 11 10 9 13 13 H 1.08997 * 111.30976 * 281.04760 * 12 11 10 14 14 C 1.52239 * 114.74827 * 152.75989 * 12 11 10 15 15 N 1.47802 * 106.11985 * 189.87998 * 14 12 11 16 16 C 1.34778 * 119.83041 * 232.11470 * 15 14 12 17 17 O 1.21719 * 120.00017 * 356.13113 * 16 15 14 18 18 C 1.46582 * 119.99674 * 176.13066 * 16 15 14 19 19 C 1.40647 * 126.53761 * 49.79132 * 18 16 15 20 20 N 1.30702 * 108.72369 * 179.81116 * 19 18 16 21 21 N 1.39911 * 109.52021 * 0.44941 * 20 19 18 22 22 C 1.36310 * 132.16186 * 179.71336 * 21 20 19 23 23 C 1.35759 * 119.15802 * 179.97438 * 22 21 20 24 24 C 1.39973 * 119.35208 * 0.02562 * 23 22 21 25 25 N 1.31504 * 120.10520 * 359.97438 * 24 23 22 26 26 C 1.33378 * 120.85414 * 0.02562 * 25 24 23 27 27 C 1.46594 * 120.48334 * 52.47030 * 15 14 12 28 28 C 1.53955 * 110.57384 * 311.84376 * 27 15 14 29 29 C 1.45474 * 126.40699 * 197.97481 * 9 7 2 30 30 H 1.08998 * 109.26403 * 93.82961 * 29 9 7 31 31 H 0.96998 * 120.00480 * 180.91276 * 1 2 3 32 32 H 1.09008 * 109.91883 * 294.39150 * 10 9 7 33 33 H 1.08998 * 109.92250 * 55.49088 * 10 9 7 34 34 H 1.09006 * 110.95725 * 95.65612 * 11 10 9 35 35 H 1.08999 * 110.95361 * 219.38343 * 11 10 9 36 36 H 1.09002 * 110.06523 * 309.63423 * 14 12 11 37 37 H 1.09000 * 110.06738 * 71.21292 * 14 12 11 38 38 H 1.07993 * 125.64108 * 359.96819 * 19 18 16 39 39 H 1.07995 * 120.42516 * 359.97438 * 22 21 20 40 40 H 1.07993 * 120.32185 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.94397 * 180.02562 * 24 23 22 42 42 H 1.08997 * 109.25427 * 191.55755 * 27 15 14 43 43 H 1.09004 * 109.25460 * 72.12252 * 27 15 14 44 44 H 1.08999 * 109.87850 * 291.59091 * 28 27 15 45 45 H 1.09004 * 109.87949 * 170.51497 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 -1.2126 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 1.4757 -2.1343 -0.1090 9 7 3.3727 -1.2062 0.1365 10 6 4.2069 -0.1004 0.6621 11 6 5.6655 -0.6275 0.7392 12 6 5.4487 -2.1485 0.7972 13 1 5.1633 -2.4700 1.7988 14 6 6.5984 -2.9778 0.2421 15 7 6.1018 -4.3677 0.1646 16 6 6.8125 -5.3659 0.7258 17 8 7.8942 -5.1324 1.2328 18 6 6.2829 -6.7327 0.7255 19 6 5.7710 -7.4321 -0.3821 20 7 5.3992 -8.6226 0.0087 21 7 5.6364 -8.7595 1.3808 22 6 5.4212 -9.7887 2.2483 23 6 5.7579 -9.6342 3.5543 24 6 6.3170 -8.4237 3.9802 25 7 6.5127 -7.4486 3.1198 26 6 6.1842 -7.5937 1.8353 27 6 4.8444 -4.6708 -0.5255 28 6 3.7317 -3.7093 -0.0696 29 6 4.2711 -2.2995 -0.2008 30 1 4.6437 -2.1588 -1.2154 31 1 -0.4851 -0.8399 0.0134 32 1 4.1564 0.7553 -0.0114 33 1 3.8599 0.1874 1.6544 34 1 6.2288 -0.3478 -0.1511 35 1 6.1621 -0.2699 1.6412 36 1 6.8786 -2.6141 -0.7465 37 1 7.4537 -2.9297 0.9160 38 1 5.6995 -7.0498 -1.3896 39 1 4.9884 -10.7152 1.9011 40 1 5.5953 -10.4371 4.2580 41 1 6.5887 -8.2906 5.0170 42 1 4.5487 -5.6954 -0.3003 43 1 4.9905 -4.5675 -1.6007 44 1 3.4701 -3.9111 0.9691 45 1 2.8538 -3.8309 -0.7042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036788386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:34 Heat of formation + Delta-G solvation = 139.423585 kcal Electronic energy + Delta-G solvation = -29984.878971 eV Core-core repulsion = 26006.305238 eV Total energy + Delta-G solvation = -3978.573733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.80935 -40.17338 -38.62126 -38.04683 -35.47586 -34.44977 -32.84621 -31.61486 -31.59164 -30.67963 -29.50636 -28.18367 -25.36191 -25.26258 -24.12703 -23.20930 -22.77325 -22.09153 -20.52063 -20.01953 -19.29549 -18.37388 -17.73773 -17.41413 -16.90380 -16.59593 -16.00491 -15.74858 -15.16245 -15.04026 -14.88891 -14.65455 -14.05819 -13.94530 -13.74229 -13.43582 -13.12280 -13.05231 -12.95935 -12.79330 -12.58799 -12.18023 -11.87502 -11.81416 -11.59534 -11.35060 -11.07850 -10.80739 -10.76713 -10.53054 -10.23430 -10.01949 -9.94527 -9.84445 -9.65310 -9.16453 -8.99611 -8.69434 -8.51758 -8.25876 -6.98590 -6.28044 -3.24418 0.03195 0.40036 1.55352 1.94296 2.73254 2.96261 3.32146 3.42688 3.44792 3.50810 3.70367 3.72767 3.91518 4.40107 4.56388 4.63027 4.65714 4.82395 4.82956 5.01024 5.02427 5.04045 5.22383 5.25138 5.35315 5.45827 5.50240 5.53343 5.63172 5.71162 5.80297 5.87157 5.95471 6.00712 6.06939 6.11836 6.17586 6.32119 6.33983 6.49229 6.54840 6.76395 6.83086 6.93055 6.97165 7.21873 7.52583 7.75718 8.33268 8.34969 9.05116 9.60490 10.29170 11.22274 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.002964 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.819400 B = 9442.880433 C = 9928.649996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.023 4.023 3 Si 1.076 2.924 4 H -0.303 1.303 5 H -0.297 1.297 6 H -0.284 1.284 7 C -0.317 4.317 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.108 3.892 11 C -0.119 4.119 12 C -0.126 4.126 13 H 0.083 0.917 14 C 0.131 3.869 15 N -0.603 5.603 16 C 0.601 3.399 17 O -0.537 6.537 18 C -0.276 4.276 19 C 0.128 3.872 20 N -0.309 5.309 21 N -0.308 5.308 22 C 0.167 3.833 23 C -0.225 4.225 24 C 0.186 3.814 25 N -0.451 5.451 26 C 0.308 3.692 27 C 0.108 3.892 28 C -0.126 4.126 29 C 0.168 3.832 30 H 0.026 0.974 31 H 0.260 0.740 32 H 0.031 0.969 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.207 0.793 39 H 0.183 0.817 40 H 0.172 0.828 41 H 0.184 0.816 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.656 -20.553 4.572 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.222 4.222 3 Si 0.910 3.090 4 H -0.232 1.232 5 H -0.226 1.226 6 H -0.211 1.211 7 C -0.444 4.444 8 H 0.094 0.906 9 N -0.331 5.331 10 C -0.017 4.017 11 C -0.158 4.158 12 C -0.146 4.146 13 H 0.101 0.899 14 C 0.010 3.990 15 N -0.335 5.335 16 C 0.389 3.611 17 O -0.414 6.414 18 C -0.292 4.292 19 C -0.053 4.053 20 N -0.131 5.131 21 N -0.077 5.077 22 C 0.031 3.969 23 C -0.248 4.248 24 C 0.003 3.997 25 N -0.162 5.162 26 C 0.078 3.922 27 C -0.016 4.016 28 C -0.165 4.165 29 C 0.060 3.940 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.223 0.777 39 H 0.201 0.799 40 H 0.189 0.811 41 H 0.201 0.799 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.745 -18.961 4.379 23.825 hybrid contribution -0.088 -1.868 0.010 1.870 sum 13.656 -20.830 4.389 25.291 Atomic orbital electron populations 1.70918 1.05657 1.29028 1.51833 1.25940 0.96574 1.01185 0.98479 0.83776 0.73067 0.75728 0.76425 1.23161 1.22569 1.21108 1.20105 0.79528 0.95173 1.49642 0.90620 1.44508 1.02743 1.11723 1.74092 1.22444 0.89740 0.91984 0.97482 1.22411 0.97205 0.94585 1.01568 1.22640 0.96515 0.94858 1.00610 0.89909 1.21570 0.97040 0.78961 1.01478 1.48122 1.22624 1.07190 1.55599 1.16832 0.83868 0.82830 0.77617 1.90785 1.20890 1.83738 1.45981 1.19354 1.20496 0.97907 0.91476 1.24166 0.91577 0.89808 0.99762 1.77606 1.29305 1.20596 0.85601 1.46982 1.40294 1.11576 1.08839 1.22151 0.94709 0.91833 0.88183 1.21930 1.06046 1.01821 0.95037 1.23598 0.88849 0.87330 0.99964 1.68245 1.17913 1.31022 0.98994 1.20280 0.94863 0.85829 0.91276 1.21936 0.83666 0.99765 0.96200 1.21829 0.97222 0.95351 1.02145 1.20567 0.89740 0.88631 0.95061 0.95708 0.93021 0.95129 0.93354 0.91296 0.91189 0.90989 0.89021 0.77690 0.79942 0.81104 0.79879 0.90149 0.91420 0.91714 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.43 13.71 55.49 0.76 -28.67 16 2 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 3 Si 1.08 27.10 24.60 -169.99 -4.18 22.92 16 4 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 5 H -0.30 -7.22 6.86 56.52 0.39 -6.84 16 6 H -0.28 -6.53 5.28 56.52 0.30 -6.24 16 7 C -0.32 -8.96 10.22 -15.06 -0.15 -9.11 16 8 H 0.08 2.24 7.45 -52.49 -0.39 1.85 16 9 N -0.60 -14.64 3.24 -163.26 -0.53 -15.17 16 10 C 0.11 2.35 4.65 -1.92 -0.01 2.34 16 11 C -0.12 -2.01 6.54 -25.13 -0.16 -2.18 16 12 C -0.13 -2.16 2.84 -89.52 -0.25 -2.41 16 13 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 14 C 0.13 1.97 5.97 -3.72 -0.02 1.95 16 15 N -0.60 -9.06 2.99 -173.99 -0.52 -9.58 16 16 C 0.60 9.81 7.53 -12.90 -0.10 9.71 16 17 O -0.54 -10.41 16.49 5.17 0.09 -10.32 16 18 C -0.28 -3.95 5.08 -104.65 -0.53 -4.48 16 19 C 0.13 1.46 9.57 -17.12 -0.16 1.30 16 20 N -0.31 -3.65 12.58 30.76 0.39 -3.26 16 21 N -0.31 -3.44 3.86 -11.97 -0.05 -3.48 16 22 C 0.17 1.09 11.29 -16.45 -0.19 0.91 16 23 C -0.22 -1.03 10.05 -39.82 -0.40 -1.43 16 24 C 0.19 1.35 11.28 -17.04 -0.19 1.16 16 25 N -0.45 -5.81 10.47 -12.00 -0.13 -5.94 16 26 C 0.31 4.23 7.90 -155.84 -1.23 3.00 16 27 C 0.11 1.47 5.60 -3.49 -0.02 1.45 16 28 C -0.13 -2.21 5.40 -26.98 -0.15 -2.35 16 29 C 0.17 3.29 2.57 -68.13 -0.18 3.12 16 30 H 0.03 0.50 7.91 -51.93 -0.41 0.09 16 31 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 32 H 0.03 0.70 4.06 -51.92 -0.21 0.49 16 33 H 0.05 1.11 6.71 -51.93 -0.35 0.76 16 34 H 0.07 1.05 8.12 -51.93 -0.42 0.62 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 37 H 0.09 1.42 7.01 -51.93 -0.36 1.05 16 38 H 0.21 1.66 7.62 -52.49 -0.40 1.26 16 39 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.17 0.05 8.06 -52.49 -0.42 -0.38 16 41 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.08 1.00 4.69 -51.93 -0.24 0.75 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 45 H 0.08 1.42 7.74 -51.93 -0.40 1.02 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -38.90 353.94 -8.51 -47.41 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.84 Total: -1.45 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -3.84 Total: 2.21 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -0.07 Total: -66.11 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 27.10 SS G_CDS: -4.18 Total: 22.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -38.90 -8.51 -47.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036788386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.835 kcal (2) G-P(sol) polarization free energy of solvation -38.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds