Wall clock time and date at job start Sat Apr 11 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00259 * 2 1 4 4 H 1.48500 * 109.46794 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47063 * 240.00350 * 3 2 1 6 6 H 1.48496 * 109.47249 * 120.00133 * 3 2 1 7 7 C 1.38809 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00698 * 6.63118 * 7 2 1 9 9 N 1.36937 * 119.99872 * 186.63712 * 7 2 1 10 10 C 1.48160 * 126.40782 * 18.28397 * 9 7 2 11 11 C 1.55289 * 107.04550 * 175.04300 * 10 9 7 12 12 C 1.53741 * 101.84237 * 337.52026 * 11 10 9 13 13 H 1.08997 * 111.30976 * 281.04760 * 12 11 10 14 14 C 1.52239 * 114.74827 * 152.75989 * 12 11 10 15 15 N 1.47802 * 106.11985 * 189.87998 * 14 12 11 16 16 C 1.34778 * 119.83041 * 232.11470 * 15 14 12 17 17 O 1.21719 * 120.00017 * 356.13113 * 16 15 14 18 18 C 1.46582 * 119.99674 * 176.13066 * 16 15 14 19 19 C 1.40647 * 126.53761 * 49.79132 * 18 16 15 20 20 N 1.30702 * 108.72369 * 179.81116 * 19 18 16 21 21 N 1.39911 * 109.52021 * 0.44941 * 20 19 18 22 22 C 1.36310 * 132.16186 * 179.71336 * 21 20 19 23 23 C 1.35759 * 119.15802 * 179.97438 * 22 21 20 24 24 C 1.39973 * 119.35208 * 0.02562 * 23 22 21 25 25 N 1.31504 * 120.10520 * 359.97438 * 24 23 22 26 26 C 1.33378 * 120.85414 * 0.02562 * 25 24 23 27 27 C 1.46594 * 120.48334 * 52.47030 * 15 14 12 28 28 C 1.53955 * 110.57384 * 311.84376 * 27 15 14 29 29 C 1.45474 * 126.40699 * 197.97481 * 9 7 2 30 30 H 1.08998 * 109.26403 * 93.82961 * 29 9 7 31 31 H 0.96998 * 120.00480 * 180.91276 * 1 2 3 32 32 H 1.09008 * 109.91883 * 294.39150 * 10 9 7 33 33 H 1.08998 * 109.92250 * 55.49088 * 10 9 7 34 34 H 1.09006 * 110.95725 * 95.65612 * 11 10 9 35 35 H 1.08999 * 110.95361 * 219.38343 * 11 10 9 36 36 H 1.09002 * 110.06523 * 309.63423 * 14 12 11 37 37 H 1.09000 * 110.06738 * 71.21292 * 14 12 11 38 38 H 1.07993 * 125.64108 * 359.96819 * 19 18 16 39 39 H 1.07995 * 120.42516 * 359.97438 * 22 21 20 40 40 H 1.07993 * 120.32185 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.94397 * 180.02562 * 24 23 22 42 42 H 1.08997 * 109.25427 * 191.55755 * 27 15 14 43 43 H 1.09004 * 109.25460 * 72.12252 * 27 15 14 44 44 H 1.08999 * 109.87850 * 291.59091 * 28 27 15 45 45 H 1.09004 * 109.87949 * 170.51497 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 -1.2126 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 1.4757 -2.1343 -0.1090 9 7 3.3727 -1.2062 0.1365 10 6 4.2069 -0.1004 0.6621 11 6 5.6655 -0.6275 0.7392 12 6 5.4487 -2.1485 0.7972 13 1 5.1633 -2.4700 1.7988 14 6 6.5984 -2.9778 0.2421 15 7 6.1018 -4.3677 0.1646 16 6 6.8125 -5.3659 0.7258 17 8 7.8942 -5.1324 1.2328 18 6 6.2829 -6.7327 0.7255 19 6 5.7710 -7.4321 -0.3821 20 7 5.3992 -8.6226 0.0087 21 7 5.6364 -8.7595 1.3808 22 6 5.4212 -9.7887 2.2483 23 6 5.7579 -9.6342 3.5543 24 6 6.3170 -8.4237 3.9802 25 7 6.5127 -7.4486 3.1198 26 6 6.1842 -7.5937 1.8353 27 6 4.8444 -4.6708 -0.5255 28 6 3.7317 -3.7093 -0.0696 29 6 4.2711 -2.2995 -0.2008 30 1 4.6437 -2.1588 -1.2154 31 1 -0.4851 -0.8399 0.0134 32 1 4.1564 0.7553 -0.0114 33 1 3.8599 0.1874 1.6544 34 1 6.2288 -0.3478 -0.1511 35 1 6.1621 -0.2699 1.6412 36 1 6.8786 -2.6141 -0.7465 37 1 7.4537 -2.9297 0.9160 38 1 5.6995 -7.0498 -1.3896 39 1 4.9884 -10.7152 1.9011 40 1 5.5953 -10.4371 4.2580 41 1 6.5887 -8.2906 5.0170 42 1 4.5487 -5.6954 -0.3003 43 1 4.9905 -4.5675 -1.6007 44 1 3.4701 -3.9111 0.9691 45 1 2.8538 -3.8309 -0.7042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036788386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:33 Heat of formation + Delta-G solvation = 110.872918 kcal Electronic energy + Delta-G solvation = -29986.117021 eV Core-core repulsion = 26006.305238 eV Total energy + Delta-G solvation = -3979.811783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.56054 -41.45989 -39.81553 -39.00779 -36.91583 -35.20517 -34.73487 -33.12100 -32.38758 -32.08158 -30.68514 -29.55725 -26.75539 -25.95075 -25.49844 -24.36307 -24.11691 -23.10475 -22.20092 -21.30116 -20.52437 -19.47834 -19.03320 -18.49112 -17.98320 -17.46659 -17.00798 -16.91502 -16.68363 -16.49612 -16.10660 -15.66211 -15.31212 -15.16005 -14.90194 -14.72101 -14.54116 -14.33093 -13.99981 -13.88419 -13.78153 -13.59133 -13.45247 -12.93902 -12.71293 -12.67989 -12.47307 -12.33640 -12.22981 -12.12697 -11.59967 -11.35297 -11.22484 -10.98246 -10.95543 -10.89201 -10.69287 -10.65568 -9.74594 -9.10880 -9.03993 -8.60149 -5.48758 -0.58921 -0.24478 0.88514 1.06438 1.42490 1.51191 1.68592 1.73047 2.05962 2.39747 2.56806 2.78473 2.95712 3.11642 3.24221 3.50428 3.60468 3.72584 3.83084 3.86690 3.88624 4.03774 4.05387 4.08807 4.19793 4.31489 4.36724 4.40391 4.48674 4.55079 4.59191 4.70657 4.78393 4.81671 4.82500 4.89439 4.96828 4.97870 5.05598 5.12753 5.28854 5.39127 5.44078 5.54805 5.63933 6.13100 6.15897 6.34051 6.55280 6.83364 7.15117 7.49482 8.16729 8.91438 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.002964 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.819400 B = 9442.880433 C = 9928.649996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.083 4.083 3 Si 1.112 2.888 4 H -0.316 1.316 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.298 4.298 8 H 0.047 0.953 9 N -0.626 5.626 10 C 0.095 3.905 11 C -0.106 4.106 12 C -0.111 4.111 13 H 0.060 0.940 14 C 0.137 3.863 15 N -0.603 5.603 16 C 0.604 3.396 17 O -0.578 6.578 18 C -0.324 4.324 19 C 0.135 3.865 20 N -0.325 5.325 21 N -0.312 5.312 22 C 0.151 3.849 23 C -0.199 4.199 24 C 0.190 3.810 25 N -0.512 5.512 26 C 0.296 3.704 27 C 0.120 3.880 28 C -0.120 4.120 29 C 0.155 3.845 30 H 0.037 0.963 31 H 0.245 0.755 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.232 0.768 39 H 0.221 0.779 40 H 0.226 0.774 41 H 0.220 0.780 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.039 0.961 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.961 -22.499 5.127 28.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.276 4.276 3 Si 0.940 3.060 4 H -0.246 1.246 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.427 4.427 8 H 0.065 0.935 9 N -0.353 5.353 10 C -0.028 4.028 11 C -0.144 4.144 12 C -0.132 4.132 13 H 0.079 0.921 14 C 0.015 3.985 15 N -0.334 5.334 16 C 0.393 3.607 17 O -0.458 6.458 18 C -0.340 4.340 19 C -0.045 4.045 20 N -0.147 5.147 21 N -0.081 5.081 22 C 0.017 3.983 23 C -0.221 4.221 24 C 0.010 3.990 25 N -0.225 5.225 26 C 0.063 3.937 27 C -0.003 4.003 28 C -0.160 4.160 29 C 0.049 3.951 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.248 0.752 39 H 0.238 0.762 40 H 0.242 0.758 41 H 0.236 0.764 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.058 0.942 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.081 -20.982 4.956 26.896 hybrid contribution -0.834 -1.539 0.044 1.751 sum 15.246 -22.521 4.999 27.652 Atomic orbital electron populations 1.71023 1.06972 1.28170 1.55395 1.27196 0.96598 1.04751 0.99007 0.83383 0.72515 0.71667 0.78438 1.24590 1.20800 1.17614 1.19999 0.81852 0.93888 1.46953 0.93504 1.44641 1.01957 1.14062 1.74609 1.22600 0.92348 0.91545 0.96355 1.22426 0.94241 0.93546 1.04233 1.22474 0.96141 0.95817 0.98719 0.92130 1.21554 0.95760 0.78665 1.02528 1.48163 1.22684 1.07123 1.55474 1.17113 0.83291 0.83751 0.76499 1.90739 1.22653 1.84592 1.47798 1.19297 1.23913 0.97607 0.93223 1.24501 0.90472 0.89341 1.00206 1.77511 1.30079 1.20802 0.86322 1.47212 1.39993 1.11964 1.08890 1.23150 0.94572 0.92113 0.88499 1.22554 1.02796 1.01751 0.95007 1.24463 0.86529 0.87197 1.00774 1.68276 1.20942 1.33853 0.99420 1.20433 0.94883 0.86630 0.91772 1.21910 0.81792 0.99213 0.97380 1.21741 0.98264 0.95535 1.00439 1.20852 0.89914 0.88181 0.96166 0.94577 0.94578 0.95101 0.94822 0.88553 0.88629 0.88600 0.89260 0.75183 0.76250 0.75781 0.76403 0.88786 0.88537 0.94220 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.68 13.71 21.65 0.30 -63.39 16 2 C -0.08 -5.06 5.50 84.86 0.47 -4.59 16 3 Si 1.11 54.84 24.60 68.60 1.69 56.52 16 4 H -0.32 -16.18 7.11 99.48 0.71 -15.47 16 5 H -0.28 -12.95 6.86 99.48 0.68 -12.26 16 6 H -0.25 -10.97 5.28 99.48 0.52 -10.44 16 7 C -0.30 -17.35 10.22 84.03 0.86 -16.49 16 8 H 0.05 2.93 7.45 -2.91 -0.02 2.91 16 9 N -0.63 -30.32 3.24 -670.43 -2.17 -32.49 16 10 C 0.10 3.99 4.65 86.85 0.40 4.40 16 11 C -0.11 -3.27 6.54 31.63 0.21 -3.07 16 12 C -0.11 -3.66 2.84 -10.08 -0.03 -3.68 16 13 H 0.06 2.26 8.11 -2.39 -0.02 2.24 16 14 C 0.14 3.86 5.97 85.88 0.51 4.37 16 15 N -0.60 -17.59 2.99 -822.60 -2.46 -20.05 16 16 C 0.60 19.76 7.53 86.42 0.65 20.41 16 17 O -0.58 -22.76 16.49 -4.41 -0.07 -22.83 16 18 C -0.32 -9.28 5.08 -19.89 -0.10 -9.38 16 19 C 0.14 3.01 9.57 85.45 0.82 3.82 16 20 N -0.33 -7.34 12.58 -56.58 -0.71 -8.06 16 21 N -0.31 -6.55 3.86 -191.80 -0.74 -7.29 16 22 C 0.15 1.50 11.29 83.42 0.94 2.44 16 23 C -0.20 -0.99 10.05 22.12 0.22 -0.77 16 24 C 0.19 2.28 11.28 85.16 0.96 3.25 16 25 N -0.51 -12.95 10.47 -191.86 -2.01 -14.96 16 26 C 0.30 8.06 7.90 133.98 1.06 9.12 16 27 C 0.12 3.15 5.60 86.68 0.49 3.64 16 28 C -0.12 -4.27 5.40 30.43 0.16 -4.10 16 29 C 0.16 5.99 2.57 45.41 0.12 6.11 16 30 H 0.04 1.36 7.91 -2.39 -0.02 1.34 16 31 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 32 H 0.03 1.33 4.06 -2.38 -0.01 1.32 16 33 H 0.03 1.50 6.71 -2.39 -0.02 1.48 16 34 H 0.10 2.49 8.12 -2.38 -0.02 2.48 16 35 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.10 2.29 8.08 -2.39 -0.02 2.27 16 37 H 0.09 2.63 7.01 -2.39 -0.02 2.61 16 38 H 0.23 3.37 7.62 -2.91 -0.02 3.35 16 39 H 0.22 0.34 8.06 -2.91 -0.02 0.31 16 40 H 0.23 -1.34 8.06 -2.91 -0.02 -1.37 16 41 H 0.22 0.75 8.06 -2.91 -0.02 0.73 16 42 H 0.09 2.27 4.69 -2.39 -0.01 2.26 16 43 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.04 1.57 8.11 -2.39 -0.02 1.55 16 45 H 0.06 2.40 7.74 -2.39 -0.02 2.38 16 Total: -1.00 -91.91 353.94 2.34 -89.57 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.78 Total: 7.52 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 7.74 Total: 15.46 kcal Atomic # 7 Polarization: -138.44 SS G_CDS: -7.80 Total: -146.23 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.07 Total: -22.83 kcal Atomic # 14 Polarization: 54.84 SS G_CDS: 1.69 Total: 56.52 kcal Total: -91.91 2.34 -89.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036788386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.440 kcal (2) G-P(sol) polarization free energy of solvation -91.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds