Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86792 * 120.00263 * 2 1 4 4 H 1.48500 * 109.47037 * 239.99953 * 3 2 1 5 5 H 1.48503 * 109.47436 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47254 * 119.99972 * 3 2 1 7 7 C 1.38816 * 119.99320 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99280 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00036 * 0.02562 * 7 2 1 10 10 C 1.48158 * 126.41107 * 359.97121 * 9 7 2 11 11 C 1.55287 * 107.04833 * 175.08305 * 10 9 7 12 12 C 1.53746 * 101.83987 * 337.52107 * 11 10 9 13 13 H 1.09005 * 111.30357 * 280.15992 * 12 11 10 14 14 C 1.52239 * 114.74988 * 152.76448 * 12 11 10 15 15 N 1.47721 * 106.35900 * 190.39228 * 14 12 11 16 16 C 1.34770 * 119.68892 * 232.05500 * 15 14 12 17 17 O 1.21561 * 119.99972 * 183.73750 * 16 15 14 18 18 C 1.47806 * 120.00000 * 3.73572 * 16 15 14 19 19 N 1.32295 * 120.58784 * 320.79750 * 18 16 15 20 20 C 1.32690 * 121.18569 * 179.67309 * 19 18 16 21 21 C 1.35486 * 122.11561 * 0.26488 * 20 19 18 22 22 N 1.36224 * 120.51865 * 0.02562 * 21 20 19 23 23 C 1.36169 * 133.92431 * 179.97438 * 22 21 20 24 24 C 1.35343 * 107.13822 * 180.02562 * 23 22 21 25 25 N 1.33558 * 108.61819 * 0.02562 * 24 23 22 26 26 C 1.31862 * 109.14235 * 0.02562 * 25 24 23 27 27 C 1.46598 * 120.62426 * 52.33545 * 15 14 12 28 28 C 1.54378 * 110.35182 * 311.81771 * 27 15 14 29 29 C 1.45473 * 126.40450 * 179.97438 * 9 7 2 30 30 H 1.08999 * 109.27053 * 93.77599 * 29 9 7 31 31 H 0.97007 * 119.99432 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.91490 * 55.73193 * 10 9 7 33 33 H 1.09005 * 109.91701 * 294.43395 * 10 9 7 34 34 H 1.09001 * 110.95497 * 219.38468 * 11 10 9 35 35 H 1.08993 * 110.95683 * 95.65634 * 11 10 9 36 36 H 1.09003 * 110.06967 * 71.18503 * 14 12 11 37 37 H 1.09001 * 110.06849 * 309.60765 * 14 12 11 38 38 H 1.07998 * 118.94884 * 180.29314 * 20 19 18 39 39 H 1.08000 * 119.74098 * 180.02562 * 21 20 19 40 40 H 1.07996 * 126.42934 * 359.97438 * 23 22 21 41 41 H 1.08006 * 125.68965 * 180.02562 * 24 23 22 42 42 H 1.08997 * 109.25987 * 72.19052 * 27 15 14 43 43 H 1.09005 * 109.25523 * 191.62483 * 27 15 14 44 44 H 1.08999 * 110.03932 * 291.82055 * 28 27 15 45 45 H 1.08999 * 109.80013 * 170.68658 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 -0.1469 -2.5533 0.0006 11 6 -0.4344 -4.0740 -0.1267 12 6 0.8680 -4.5892 -0.7608 13 1 0.8848 -4.4064 -1.8352 14 6 1.2005 -6.0407 -0.4439 15 7 2.5818 -6.2641 -0.9174 16 6 2.8479 -7.3030 -1.7335 17 8 3.9927 -7.5324 -2.0720 18 6 1.7477 -8.1635 -2.2171 19 7 0.7497 -8.4949 -1.4144 20 6 -0.2472 -9.2613 -1.8380 21 6 -0.2956 -9.7470 -3.1019 22 7 0.6947 -9.4591 -3.9919 23 6 0.9207 -9.7902 -5.2933 24 6 2.0858 -9.2053 -5.6570 25 7 2.5692 -8.5308 -4.6106 26 6 1.7464 -8.6690 -3.5895 27 6 3.6671 -5.3698 -0.5031 28 6 3.2473 -3.8955 -0.6857 29 6 1.9075 -3.7212 0.0005 30 1 1.9894 -4.0780 1.0272 31 1 -0.4850 0.8402 0.0004 32 1 -0.5803 -2.0213 -0.8463 33 1 -0.5632 -2.1735 0.9337 34 1 -1.2859 -4.2563 -0.7823 35 1 -0.5954 -4.5237 0.8530 36 1 0.5134 -6.7049 -0.9682 37 1 1.1412 -6.2119 0.6310 38 1 -1.0461 -9.5056 -1.1534 39 1 -1.1257 -10.3673 -3.4061 40 1 0.2893 -10.4048 -5.9176 41 1 2.5475 -9.2727 -6.6311 42 1 3.9031 -5.5526 0.5452 43 1 4.5500 -5.5708 -1.1100 44 1 3.1536 -3.6625 -1.7463 45 1 3.9875 -3.2411 -0.2253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036824055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 102.795611 kcal Electronic energy + Delta-G solvation = -30114.808980 eV Core-core repulsion = 26134.646939 eV Total energy + Delta-G solvation = -3980.162041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.07538 -41.58945 -39.88932 -39.30661 -36.78244 -35.49068 -34.42146 -33.32888 -31.75549 -31.21919 -30.56562 -29.59130 -27.24578 -26.34580 -24.83165 -24.38397 -23.89820 -22.92776 -21.89898 -21.44312 -20.69667 -19.67764 -19.01133 -18.42869 -17.54843 -17.23178 -17.07305 -16.80966 -16.57128 -16.25288 -15.97875 -15.68050 -15.60979 -15.09076 -14.81299 -14.75174 -14.55817 -14.21180 -14.12186 -13.99256 -13.69944 -13.27327 -13.10977 -13.06781 -12.66470 -12.65548 -12.48262 -12.11430 -12.03932 -11.80582 -11.64549 -11.52654 -11.47331 -11.36377 -11.17239 -10.70000 -10.61807 -10.09546 -9.78837 -9.21723 -8.85541 -7.82754 -5.16467 -0.99275 0.11480 1.13881 1.45615 1.48360 1.49081 1.54214 1.76074 1.82700 2.37851 2.50944 2.69857 2.93658 3.23673 3.35485 3.45575 3.62205 3.83364 3.84691 4.02600 4.03994 4.12558 4.19643 4.27013 4.34368 4.37403 4.39651 4.48716 4.66267 4.69664 4.76608 4.84032 4.86385 4.90483 5.02561 5.10949 5.11213 5.16895 5.43160 5.45862 5.52118 5.54720 5.68832 5.71076 5.79261 6.15384 6.22492 6.36925 6.71914 6.90835 7.11520 7.81105 8.49058 9.28639 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018215 B = 0.002936 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.867361 B = 9533.831689 C = 9888.116518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.973 3.027 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.233 4.233 8 H 0.082 0.918 9 N -0.616 5.616 10 C 0.181 3.819 11 C -0.115 4.115 12 C -0.113 4.113 13 H 0.055 0.945 14 C 0.127 3.873 15 N -0.587 5.587 16 C 0.574 3.426 17 O -0.554 6.554 18 C 0.139 3.861 19 N -0.415 5.415 20 C 0.010 3.990 21 C 0.060 3.940 22 N -0.358 5.358 23 C -0.057 4.057 24 C 0.010 3.990 25 N -0.506 5.506 26 C 0.161 3.839 27 C 0.125 3.875 28 C -0.120 4.120 29 C 0.157 3.843 30 H 0.029 0.971 31 H 0.245 0.755 32 H 0.015 0.985 33 H 0.007 0.993 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.231 0.769 39 H 0.235 0.765 40 H 0.244 0.756 41 H 0.212 0.788 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.948 -26.177 -6.925 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.802 3.198 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.362 4.362 8 H 0.100 0.900 9 N -0.341 5.341 10 C 0.056 3.944 11 C -0.153 4.153 12 C -0.134 4.134 13 H 0.074 0.926 14 C 0.005 3.995 15 N -0.319 5.319 16 C 0.359 3.641 17 O -0.431 6.431 18 C -0.024 4.024 19 N -0.131 5.131 20 C -0.130 4.130 21 C -0.064 4.064 22 N -0.032 5.032 23 C -0.190 4.190 24 C -0.140 4.140 25 N -0.227 5.227 26 C -0.086 4.086 27 C 0.003 3.997 28 C -0.159 4.159 29 C 0.050 3.950 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.025 0.975 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.113 0.887 38 H 0.248 0.752 39 H 0.251 0.749 40 H 0.260 0.740 41 H 0.229 0.771 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.064 0.936 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.829 -25.422 -6.226 26.615 hybrid contribution -0.125 0.945 -0.957 1.350 sum -4.953 -24.477 -7.183 25.986 Atomic orbital electron populations 1.70152 1.06155 1.25123 1.58669 1.25581 0.96571 1.00780 1.03103 0.85230 0.77193 0.79289 0.78126 1.20704 1.22123 1.20264 1.19351 0.90935 0.83624 1.42254 0.89993 1.44496 1.02478 1.00665 1.86449 1.21333 0.83365 0.92034 0.97641 1.22558 0.96388 0.95105 1.01295 1.22532 0.96830 0.95238 0.98797 0.92615 1.22209 0.80862 0.94891 1.01540 1.48186 1.10964 1.26505 1.46210 1.17686 0.86996 0.81055 0.78315 1.90795 1.21981 1.71763 1.58520 1.21513 0.95230 0.98979 0.86663 1.68205 1.00086 1.10495 1.34279 1.23041 0.98365 0.96686 0.94952 1.23770 0.92967 1.00233 0.89457 1.43215 1.16601 1.31946 1.11487 1.23605 1.02871 1.09442 0.83037 1.23507 0.94662 0.96702 0.99152 1.70512 1.28383 1.23928 0.99863 1.22392 0.89111 1.00718 0.96398 1.21699 0.89230 0.87458 1.01330 1.21861 0.98385 0.95382 1.00278 1.20873 0.92731 0.85367 0.95989 0.95346 0.94558 0.96656 0.97494 0.90019 0.89612 0.86489 0.88744 0.75244 0.74893 0.73999 0.77118 0.89329 0.89675 0.93551 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.89 10.44 21.65 0.23 -57.66 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 3 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.23 -13.13 9.88 84.04 0.83 -12.30 16 8 H 0.08 4.43 7.21 -2.91 -0.02 4.41 16 9 N -0.62 -31.74 3.35 -669.89 -2.24 -33.98 16 10 C 0.18 8.89 5.45 86.85 0.47 9.37 16 11 C -0.11 -3.99 6.54 31.63 0.21 -3.78 16 12 C -0.11 -3.94 2.85 -9.98 -0.03 -3.97 16 13 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 14 C 0.13 3.51 5.50 85.89 0.47 3.98 16 15 N -0.59 -18.60 2.99 -820.62 -2.46 -21.06 16 16 C 0.57 19.76 7.49 86.78 0.65 20.41 16 17 O -0.55 -22.71 16.31 -3.91 -0.06 -22.77 16 18 C 0.14 3.98 6.19 43.69 0.27 4.25 16 19 N -0.41 -8.68 7.32 -181.37 -1.33 -10.01 16 20 C 0.01 0.11 11.01 83.93 0.92 1.03 16 21 C 0.06 0.49 11.00 83.37 0.92 1.41 16 22 N -0.36 -6.02 2.95 -347.29 -1.02 -7.04 16 23 C -0.06 -0.70 11.80 83.35 0.98 0.28 16 24 C 0.01 0.20 11.83 83.76 0.99 1.19 16 25 N -0.51 -15.64 11.29 -189.61 -2.14 -17.78 16 26 C 0.16 4.48 7.72 135.58 1.05 5.53 16 27 C 0.13 4.00 6.33 86.83 0.55 4.55 16 28 C -0.12 -4.49 5.50 30.58 0.17 -4.32 16 29 C 0.16 6.40 2.57 45.51 0.12 6.52 16 30 H 0.03 1.16 7.92 -2.39 -0.02 1.14 16 31 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 32 H 0.02 0.85 7.21 -2.39 -0.02 0.83 16 33 H 0.01 0.37 7.77 -2.38 -0.02 0.35 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.09 2.57 8.11 -2.39 -0.02 2.55 16 36 H 0.12 2.91 4.58 -2.39 -0.01 2.90 16 37 H 0.09 2.34 8.08 -2.39 -0.02 2.32 16 38 H 0.23 0.27 8.06 -2.91 -0.02 0.25 16 39 H 0.23 -0.87 8.06 -2.91 -0.02 -0.90 16 40 H 0.24 0.18 8.06 -2.91 -0.02 0.16 16 41 H 0.21 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.08 2.84 6.98 -2.38 -0.02 2.82 16 44 H 0.05 1.90 8.13 -2.39 -0.02 1.89 16 45 H 0.07 2.80 7.62 -2.39 -0.02 2.78 16 Total: -1.00 -86.98 361.24 3.05 -83.93 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.02 Total: 6.90 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: 9.04 Total: 30.72 kcal Atomic # 7 Polarization: -138.57 SS G_CDS: -8.97 Total: -147.54 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.06 Total: -22.77 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -86.98 3.05 -83.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036824055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.728 kcal (2) G-P(sol) polarization free energy of solvation -86.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds