Wall clock time and date at job start Sat Apr 11 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00562 * 2 1 4 4 H 1.48498 * 109.46795 * 274.99845 * 3 2 1 5 5 H 1.48497 * 109.46500 * 34.99979 * 3 2 1 6 6 H 1.48499 * 109.47055 * 154.99664 * 3 2 1 7 7 C 1.38820 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00380 * 174.95883 * 7 2 1 9 9 N 1.36939 * 119.99810 * 354.95806 * 7 2 1 10 10 C 1.47430 * 126.05584 * 4.99781 * 9 7 2 11 11 C 1.54498 * 107.15059 * 178.43024 * 10 9 7 12 12 C 1.56024 * 102.61822 * 337.16465 * 11 10 9 13 13 H 1.09004 * 112.90044 * 157.11304 * 12 11 10 14 14 C 1.53657 * 106.25416 * 281.81687 * 12 11 10 15 15 N 1.46522 * 109.96442 * 157.20058 * 14 12 11 16 16 C 1.34772 * 121.00651 * 124.38806 * 15 14 12 17 17 O 1.21560 * 120.00098 * 5.79326 * 16 15 14 18 18 C 1.47808 * 120.00126 * 185.79278 * 16 15 14 19 19 N 1.32296 * 120.58370 * 354.16547 * 18 16 15 20 20 C 1.32695 * 121.18208 * 180.02562 * 19 18 16 21 21 C 1.35476 * 122.11451 * 0.02562 * 20 19 18 22 22 N 1.36220 * 120.52693 * 359.70669 * 21 20 19 23 23 C 1.36162 * 133.92626 * 179.65764 * 22 21 20 24 24 C 1.35346 * 107.14263 * 180.44180 * 23 22 21 25 25 N 1.33570 * 108.61357 * 0.23007 * 24 23 22 26 26 C 1.31861 * 109.14120 * 359.97438 * 25 24 23 27 27 C 1.47138 * 117.97947 * 304.11408 * 15 14 12 28 28 C 1.53050 * 107.68567 * 57.69086 * 27 15 14 29 29 C 1.46466 * 126.05596 * 185.02933 * 9 7 2 30 30 H 1.09001 * 107.75111 * 90.42135 * 29 9 7 31 31 H 0.97005 * 119.99748 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.90217 * 59.05017 * 10 9 7 33 33 H 1.08999 * 110.05314 * 297.89542 * 10 9 7 34 34 H 1.09004 * 110.78230 * 218.88526 * 11 10 9 35 35 H 1.08993 * 110.78204 * 95.44831 * 11 10 9 36 36 H 1.09003 * 109.49804 * 37.02980 * 14 12 11 37 37 H 1.09001 * 109.43510 * 277.33387 * 14 12 11 38 38 H 1.08003 * 118.94119 * 179.97438 * 20 19 18 39 39 H 1.08008 * 119.73559 * 179.97438 * 21 20 19 40 40 H 1.08000 * 126.43347 * 0.70789 * 23 22 21 41 41 H 1.07995 * 125.69846 * 180.20536 * 24 23 22 42 42 H 1.09003 * 109.81423 * 177.22955 * 27 15 14 43 43 H 1.08998 * 109.81969 * 298.07583 * 27 15 14 44 44 H 1.08995 * 109.15214 * 66.00325 * 28 27 15 45 45 H 1.08995 * 109.15386 * 185.17340 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5046 2.6198 0.8031 6 1 3.5967 1.4118 0.5918 7 6 2.0102 -1.2022 0.0005 8 1 3.0871 -1.2042 -0.0816 9 7 1.3294 -2.3858 0.1053 10 6 -0.1361 -2.5454 0.1202 11 6 -0.4285 -4.0597 0.2133 12 6 0.8828 -4.6949 -0.3447 13 1 1.0359 -5.7192 -0.0047 14 6 0.8048 -4.5690 -1.8741 15 7 2.1512 -4.6217 -2.4497 16 6 2.4671 -5.5291 -3.3948 17 8 1.6047 -6.2497 -3.8580 18 6 3.8623 -5.6481 -3.8680 19 7 4.7872 -4.7956 -3.4581 20 6 6.0431 -4.8910 -3.8757 21 6 6.4442 -5.8567 -4.7370 22 7 5.5573 -6.7789 -5.2044 23 6 5.6546 -7.8349 -6.0585 24 6 4.4227 -8.3878 -6.1512 25 7 3.5835 -7.6910 -5.3803 26 6 4.2448 -6.7100 -4.7980 27 6 3.1459 -3.6499 -1.9691 28 6 3.2749 -3.8272 -0.4544 29 6 1.9283 -3.7172 0.2231 30 1 2.0572 -3.9310 1.2841 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5628 -2.1409 -0.7977 33 1 -0.5593 -2.0320 0.9835 34 1 -1.2829 -4.3275 -0.4084 35 1 -0.5931 -4.3588 1.2483 36 1 0.3362 -3.6208 -2.1376 37 1 0.2080 -5.3881 -2.2755 38 1 6.7686 -4.1753 -3.5181 39 1 7.4765 -5.8984 -5.0522 40 1 6.5481 -8.1712 -6.5634 41 1 4.1616 -9.2484 -6.7491 42 1 4.1075 -3.8388 -2.4464 43 1 2.8132 -2.6372 -2.1966 44 1 3.7019 -4.8078 -0.2442 45 1 3.9378 -3.0574 -0.0594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036824057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:41 Heat of formation + Delta-G solvation = 138.632378 kcal Electronic energy + Delta-G solvation = -30534.503555 eV Core-core repulsion = 26555.895513 eV Total energy + Delta-G solvation = -3978.608042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.29186 -40.17122 -38.73329 -37.99699 -35.00804 -34.47198 -32.67198 -31.50553 -30.91393 -29.95200 -29.14720 -27.50703 -26.20637 -24.74101 -23.74289 -23.61017 -22.41309 -22.19920 -20.39820 -19.91510 -18.87456 -18.53201 -17.66483 -16.53299 -16.36652 -16.12906 -15.88271 -15.83850 -15.11668 -14.91004 -14.61828 -14.40084 -14.12997 -13.88108 -13.78807 -13.37587 -13.22620 -12.78076 -12.73839 -12.58764 -12.05432 -11.76873 -11.44175 -11.42872 -11.11909 -11.01273 -10.77021 -10.64447 -10.40202 -10.23166 -10.04833 -9.96106 -9.83558 -9.56830 -9.55516 -9.29947 -8.77246 -8.55729 -8.53796 -8.06035 -6.74881 -5.67410 -2.98691 -0.20914 0.86415 1.98299 2.47546 2.69614 2.98630 3.41332 3.46608 3.48907 3.54249 3.67027 3.78529 3.96161 4.27236 4.52864 4.70345 4.76705 4.94036 5.02326 5.27197 5.30374 5.42071 5.52076 5.61272 5.66682 5.67609 5.92188 5.98020 6.10520 6.17271 6.18432 6.24304 6.36929 6.38417 6.45056 6.55603 6.62429 6.77538 6.85364 6.90252 6.99360 7.12186 7.18790 7.52502 7.61334 7.68252 7.81473 7.86838 8.30192 8.36700 9.25936 9.88522 10.56969 11.45216 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.003446 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.619007 B = 8123.504349 C = 9228.741464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.176 3.824 11 C -0.143 4.143 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.125 3.875 15 N -0.571 5.571 16 C 0.562 3.438 17 O -0.513 6.513 18 C 0.200 3.800 19 N -0.413 5.413 20 C 0.026 3.974 21 C 0.027 3.973 22 N -0.356 5.356 23 C -0.081 4.081 24 C 0.031 3.969 25 N -0.431 5.431 26 C 0.190 3.810 27 C 0.047 3.953 28 C -0.123 4.123 29 C 0.168 3.832 30 H 0.015 0.985 31 H 0.251 0.749 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.187 0.813 39 H 0.175 0.825 40 H 0.190 0.810 41 H 0.189 0.811 42 H 0.160 0.840 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.366 -14.157 -9.535 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.136 4.136 13 H 0.095 0.905 14 C 0.004 3.996 15 N -0.301 5.301 16 C 0.346 3.654 17 O -0.387 6.387 18 C 0.036 3.964 19 N -0.128 5.128 20 C -0.113 4.113 21 C -0.098 4.098 22 N -0.030 5.030 23 C -0.215 4.215 24 C -0.122 4.122 25 N -0.151 5.151 26 C -0.057 4.057 27 C -0.075 4.075 28 C -0.162 4.162 29 C 0.060 3.940 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.204 0.796 39 H 0.193 0.807 40 H 0.207 0.793 41 H 0.206 0.794 42 H 0.174 0.826 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.026 -13.760 -9.138 21.036 hybrid contribution 1.712 0.592 -0.543 1.891 sum 14.738 -13.167 -9.680 22.007 Atomic orbital electron populations 1.69963 1.04850 1.24835 1.57111 1.24775 0.95610 0.97463 1.02600 0.86194 0.78694 0.84092 0.77366 1.21856 1.21850 1.20714 1.18970 0.90729 0.82253 1.42880 0.90318 1.44324 1.01411 1.00032 1.86148 1.21236 0.84466 0.88279 1.00847 1.23144 0.95896 0.99439 0.99665 1.22824 0.97883 0.98389 0.94477 0.90457 1.21740 0.82229 1.03159 0.92508 1.47951 1.13808 1.31429 1.36926 1.17242 0.85082 0.81881 0.81221 1.90862 1.47362 1.44070 1.56417 1.22548 0.95213 0.87877 0.90810 1.68062 1.01401 1.22371 1.20931 1.22418 0.94082 0.98234 0.96559 1.22689 0.96637 0.91107 0.99345 1.42911 1.10057 1.20292 1.29737 1.22795 1.02843 0.93311 1.02559 1.22932 0.88529 1.00920 0.99843 1.70698 1.30482 1.04191 1.09723 1.22453 0.80584 1.00013 1.02621 1.23624 0.96119 0.92517 0.95237 1.21518 0.98484 1.00404 0.95777 1.20296 0.91175 0.86678 0.95803 0.96729 0.93901 0.93924 0.93744 0.91985 0.92352 0.89971 0.90156 0.79570 0.80735 0.79260 0.79446 0.82553 0.90099 0.93326 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.41 55.49 0.58 -25.99 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.66 29.56 -169.99 -5.02 16.63 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.22 -5.78 9.03 -15.06 -0.14 -5.91 16 8 H 0.08 1.98 6.66 -52.49 -0.35 1.63 16 9 N -0.59 -14.36 3.12 -164.49 -0.51 -14.87 16 10 C 0.18 4.19 4.64 -2.75 -0.01 4.18 16 11 C -0.14 -2.69 6.29 -24.33 -0.15 -2.84 16 12 C -0.12 -2.11 3.88 -88.14 -0.34 -2.45 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 14 C 0.13 2.35 5.45 -3.69 -0.02 2.33 16 15 N -0.57 -10.35 2.93 -173.85 -0.51 -10.86 16 16 C 0.56 10.25 7.69 -12.35 -0.09 10.16 16 17 O -0.51 -10.66 15.70 5.31 0.08 -10.58 16 18 C 0.20 3.08 6.89 -80.54 -0.55 2.52 16 19 N -0.41 -5.26 6.13 -8.68 -0.05 -5.31 16 20 C 0.03 0.22 11.01 -18.16 -0.20 0.02 16 21 C 0.03 0.20 11.00 -16.59 -0.18 0.02 16 22 N -0.36 -3.69 2.95 -61.12 -0.18 -3.87 16 23 C -0.08 -0.66 11.80 -16.66 -0.20 -0.86 16 24 C 0.03 0.32 11.84 -17.83 -0.21 0.10 16 25 N -0.43 -6.64 10.75 -11.28 -0.12 -6.76 16 26 C 0.19 2.78 7.66 -153.98 -1.18 1.60 16 27 C 0.05 0.82 6.18 -3.67 -0.02 0.79 16 28 C -0.12 -2.18 5.17 -27.64 -0.14 -2.32 16 29 C 0.17 3.41 2.85 -68.37 -0.19 3.21 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.04 1.12 7.13 -51.93 -0.37 0.75 16 33 H 0.04 1.18 7.44 -51.93 -0.39 0.79 16 34 H 0.06 1.07 7.97 -51.93 -0.41 0.65 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.72 6.81 -51.93 -0.35 1.37 16 37 H 0.08 1.48 7.02 -51.93 -0.36 1.11 16 38 H 0.19 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.18 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.19 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.19 1.25 8.06 -52.49 -0.42 0.82 16 42 H 0.16 2.41 3.36 -102.37 -0.34 2.07 16 43 H 0.08 1.65 7.48 -51.93 -0.39 1.26 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.32 7.01 -51.93 -0.36 0.95 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -34.80 353.72 -10.00 -44.80 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.85 Total: 1.26 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -3.74 Total: 10.23 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: -0.80 Total: -67.67 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.80 -10.00 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036824057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.430 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds