Wall clock time and date at job start Sat Apr 11 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00562 * 2 1 4 4 H 1.48498 * 109.46795 * 274.99845 * 3 2 1 5 5 H 1.48497 * 109.46500 * 34.99979 * 3 2 1 6 6 H 1.48499 * 109.47055 * 154.99664 * 3 2 1 7 7 C 1.38820 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00380 * 174.95883 * 7 2 1 9 9 N 1.36939 * 119.99810 * 354.95806 * 7 2 1 10 10 C 1.47430 * 126.05584 * 4.99781 * 9 7 2 11 11 C 1.54498 * 107.15059 * 178.43024 * 10 9 7 12 12 C 1.56024 * 102.61822 * 337.16465 * 11 10 9 13 13 H 1.09004 * 112.90044 * 157.11304 * 12 11 10 14 14 C 1.53657 * 106.25416 * 281.81687 * 12 11 10 15 15 N 1.46522 * 109.96442 * 157.20058 * 14 12 11 16 16 C 1.34772 * 121.00651 * 124.38806 * 15 14 12 17 17 O 1.21560 * 120.00098 * 5.79326 * 16 15 14 18 18 C 1.47808 * 120.00126 * 185.79278 * 16 15 14 19 19 N 1.32296 * 120.58370 * 354.16547 * 18 16 15 20 20 C 1.32695 * 121.18208 * 180.02562 * 19 18 16 21 21 C 1.35476 * 122.11451 * 0.02562 * 20 19 18 22 22 N 1.36220 * 120.52693 * 359.70669 * 21 20 19 23 23 C 1.36162 * 133.92626 * 179.65764 * 22 21 20 24 24 C 1.35346 * 107.14263 * 180.44180 * 23 22 21 25 25 N 1.33570 * 108.61357 * 0.23007 * 24 23 22 26 26 C 1.31861 * 109.14120 * 359.97438 * 25 24 23 27 27 C 1.47138 * 117.97947 * 304.11408 * 15 14 12 28 28 C 1.53050 * 107.68567 * 57.69086 * 27 15 14 29 29 C 1.46466 * 126.05596 * 185.02933 * 9 7 2 30 30 H 1.09001 * 107.75111 * 90.42135 * 29 9 7 31 31 H 0.97005 * 119.99748 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.90217 * 59.05017 * 10 9 7 33 33 H 1.08999 * 110.05314 * 297.89542 * 10 9 7 34 34 H 1.09004 * 110.78230 * 218.88526 * 11 10 9 35 35 H 1.08993 * 110.78204 * 95.44831 * 11 10 9 36 36 H 1.09003 * 109.49804 * 37.02980 * 14 12 11 37 37 H 1.09001 * 109.43510 * 277.33387 * 14 12 11 38 38 H 1.08003 * 118.94119 * 179.97438 * 20 19 18 39 39 H 1.08008 * 119.73559 * 179.97438 * 21 20 19 40 40 H 1.08000 * 126.43347 * 0.70789 * 23 22 21 41 41 H 1.07995 * 125.69846 * 180.20536 * 24 23 22 42 42 H 1.09003 * 109.81423 * 177.22955 * 27 15 14 43 43 H 1.08998 * 109.81969 * 298.07583 * 27 15 14 44 44 H 1.08995 * 109.15214 * 66.00325 * 28 27 15 45 45 H 1.08995 * 109.15386 * 185.17340 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5046 2.6198 0.8031 6 1 3.5967 1.4118 0.5918 7 6 2.0102 -1.2022 0.0005 8 1 3.0871 -1.2042 -0.0816 9 7 1.3294 -2.3858 0.1053 10 6 -0.1361 -2.5454 0.1202 11 6 -0.4285 -4.0597 0.2133 12 6 0.8828 -4.6949 -0.3447 13 1 1.0359 -5.7192 -0.0047 14 6 0.8048 -4.5690 -1.8741 15 7 2.1512 -4.6217 -2.4497 16 6 2.4671 -5.5291 -3.3948 17 8 1.6047 -6.2497 -3.8580 18 6 3.8623 -5.6481 -3.8680 19 7 4.7872 -4.7956 -3.4581 20 6 6.0431 -4.8910 -3.8757 21 6 6.4442 -5.8567 -4.7370 22 7 5.5573 -6.7789 -5.2044 23 6 5.6546 -7.8349 -6.0585 24 6 4.4227 -8.3878 -6.1512 25 7 3.5835 -7.6910 -5.3803 26 6 4.2448 -6.7100 -4.7980 27 6 3.1459 -3.6499 -1.9691 28 6 3.2749 -3.8272 -0.4544 29 6 1.9283 -3.7172 0.2231 30 1 2.0572 -3.9310 1.2841 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5628 -2.1409 -0.7977 33 1 -0.5593 -2.0320 0.9835 34 1 -1.2829 -4.3275 -0.4084 35 1 -0.5931 -4.3588 1.2483 36 1 0.3362 -3.6208 -2.1376 37 1 0.2080 -5.3881 -2.2755 38 1 6.7686 -4.1753 -3.5181 39 1 7.4765 -5.8984 -5.0522 40 1 6.5481 -8.1712 -6.5634 41 1 4.1616 -9.2484 -6.7491 42 1 4.1075 -3.8388 -2.4464 43 1 2.8132 -2.6372 -2.1966 44 1 3.7019 -4.8078 -0.2442 45 1 3.9378 -3.0574 -0.0594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036824057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:40 Heat of formation + Delta-G solvation = 115.905766 kcal Electronic energy + Delta-G solvation = -30535.489055 eV Core-core repulsion = 26555.895513 eV Total energy + Delta-G solvation = -3979.593542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.07341 -41.55103 -39.91151 -39.28228 -36.48432 -35.46226 -34.49515 -33.14089 -31.80293 -31.04987 -30.59260 -29.11087 -27.43734 -26.41126 -25.16317 -24.46929 -23.85445 -23.13162 -21.84274 -21.45089 -20.00760 -19.68857 -18.91315 -18.20360 -17.36516 -17.25019 -17.02851 -17.00160 -16.64470 -16.18416 -16.05471 -15.67684 -15.44914 -15.19927 -14.79618 -14.59406 -14.42140 -14.18370 -13.95175 -13.87111 -13.82223 -13.19222 -13.08531 -12.85202 -12.70099 -12.62384 -12.53878 -12.28246 -11.98079 -11.76550 -11.53673 -11.50960 -11.41529 -11.21255 -11.13204 -10.60847 -10.08632 -9.97129 -9.60160 -9.22191 -8.76234 -7.76224 -5.08488 -1.07526 0.10984 1.23333 1.49027 1.50262 1.51662 1.59145 1.85313 1.86348 2.50843 2.55710 2.75631 2.90503 3.20668 3.43331 3.59350 3.66666 3.85522 3.91403 3.99218 4.06639 4.07688 4.36180 4.38502 4.38943 4.43165 4.51157 4.59067 4.71054 4.74267 4.78721 4.82453 4.99384 5.00741 5.13013 5.24718 5.30997 5.36935 5.44456 5.52954 5.59916 5.70291 5.71173 5.80559 5.82690 6.27344 6.28244 6.47342 6.75938 7.01743 7.17993 7.87805 8.55646 9.36022 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.003446 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.619007 B = 8123.504349 C = 9228.741464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.292 1.292 5 H -0.302 1.302 6 H -0.263 1.263 7 C -0.215 4.215 8 H 0.091 0.909 9 N -0.608 5.608 10 C 0.186 3.814 11 C -0.129 4.129 12 C -0.102 4.102 13 H 0.104 0.896 14 C 0.131 3.869 15 N -0.577 5.577 16 C 0.562 3.438 17 O -0.552 6.552 18 C 0.148 3.852 19 N -0.414 5.414 20 C 0.005 3.995 21 C 0.068 3.932 22 N -0.358 5.358 23 C -0.054 4.054 24 C 0.010 3.990 25 N -0.493 5.493 26 C 0.163 3.837 27 C 0.056 3.944 28 C -0.116 4.116 29 C 0.160 3.840 30 H 0.015 0.985 31 H 0.241 0.759 32 H 0.005 0.995 33 H 0.008 0.992 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.229 0.771 39 H 0.237 0.763 40 H 0.245 0.755 41 H 0.214 0.786 42 H 0.186 0.814 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.544 -16.016 -10.683 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.799 3.201 4 H -0.220 1.220 5 H -0.229 1.229 6 H -0.187 1.187 7 C -0.344 4.344 8 H 0.108 0.892 9 N -0.333 5.333 10 C 0.061 3.939 11 C -0.168 4.168 12 C -0.122 4.122 13 H 0.122 0.878 14 C 0.008 3.992 15 N -0.307 5.307 16 C 0.349 3.651 17 O -0.429 6.429 18 C -0.014 4.014 19 N -0.128 5.128 20 C -0.135 4.135 21 C -0.057 4.057 22 N -0.032 5.032 23 C -0.186 4.186 24 C -0.141 4.141 25 N -0.214 5.214 26 C -0.084 4.084 27 C -0.065 4.065 28 C -0.155 4.155 29 C 0.054 3.946 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.023 0.977 33 H 0.027 0.973 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.246 0.754 39 H 0.254 0.746 40 H 0.262 0.738 41 H 0.230 0.770 42 H 0.201 0.799 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.225 -15.662 -10.286 26.139 hybrid contribution 0.320 1.052 -0.339 1.151 sum 18.545 -14.610 -10.624 25.889 Atomic orbital electron populations 1.70199 1.06369 1.24705 1.59262 1.25584 0.96411 1.00788 1.03700 0.85173 0.78115 0.79895 0.76911 1.21993 1.22939 1.18696 1.19381 0.91415 0.83061 1.40569 0.89176 1.44563 1.01774 1.01256 1.85703 1.20953 0.84399 0.91242 0.97333 1.23023 0.96995 0.95601 1.01188 1.22792 0.96546 0.99146 0.93741 0.87765 1.21521 0.83177 1.01344 0.93111 1.47967 1.13361 1.32005 1.37393 1.17695 0.86578 0.80737 0.80122 1.90809 1.49156 1.45419 1.57533 1.21668 0.94028 0.90975 0.94717 1.67466 1.03010 1.21600 1.20773 1.23134 0.92762 1.00085 0.97559 1.23708 0.98241 0.87972 0.95747 1.43271 1.09116 1.21161 1.29693 1.23642 1.03593 0.91100 1.00307 1.23586 0.89190 1.01644 0.99667 1.70598 1.33103 1.05876 1.11814 1.22225 0.82591 1.00157 1.03416 1.23685 0.97141 0.90348 0.95369 1.21455 0.96841 1.01633 0.95532 1.20530 0.92917 0.85053 0.96137 0.96789 0.94950 0.97674 0.97350 0.90404 0.90603 0.93239 0.90117 0.75437 0.74625 0.73839 0.76951 0.79938 0.93975 0.90916 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.32 10.41 21.65 0.23 -58.10 16 2 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 3 Si 0.97 45.70 29.56 68.60 2.03 47.72 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.22 -11.60 9.03 84.03 0.76 -10.84 16 8 H 0.09 4.54 6.66 -2.91 -0.02 4.52 16 9 N -0.61 -30.46 3.12 -674.34 -2.10 -32.56 16 10 C 0.19 9.37 4.64 86.71 0.40 9.78 16 11 C -0.13 -4.97 6.29 32.15 0.20 -4.77 16 12 C -0.10 -3.75 3.88 -9.19 -0.04 -3.78 16 13 H 0.10 3.34 8.14 -2.38 -0.02 3.32 16 14 C 0.13 5.16 5.45 86.60 0.47 5.63 16 15 N -0.58 -21.71 2.93 -822.20 -2.41 -24.12 16 16 C 0.56 21.39 7.69 86.78 0.67 22.06 16 17 O -0.55 -24.36 15.70 -3.91 -0.06 -24.42 16 18 C 0.15 4.54 6.89 43.69 0.30 4.84 16 19 N -0.41 -9.77 6.13 -181.37 -1.11 -10.88 16 20 C 0.00 0.06 11.01 83.92 0.92 0.98 16 21 C 0.07 0.58 11.00 83.37 0.92 1.50 16 22 N -0.36 -5.94 2.95 -347.29 -1.02 -6.97 16 23 C -0.05 -0.62 11.80 83.35 0.98 0.37 16 24 C 0.01 0.19 11.84 83.76 0.99 1.18 16 25 N -0.49 -15.16 10.75 -189.61 -2.04 -17.20 16 26 C 0.16 4.60 7.66 135.57 1.04 5.64 16 27 C 0.06 1.98 6.18 86.27 0.53 2.51 16 28 C -0.12 -4.03 5.17 30.01 0.16 -3.87 16 29 C 0.16 6.50 2.85 44.73 0.13 6.63 16 30 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.24 14.51 8.31 -92.70 -0.77 13.74 16 32 H 0.01 0.29 7.13 -2.38 -0.02 0.27 16 33 H 0.01 0.47 7.44 -2.39 -0.02 0.45 16 34 H 0.08 2.74 7.97 -2.38 -0.02 2.72 16 35 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.05 2.25 6.81 -2.39 -0.02 2.23 16 37 H 0.08 3.14 7.02 -2.39 -0.02 3.12 16 38 H 0.23 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.24 -0.90 8.06 -2.91 -0.02 -0.92 16 40 H 0.25 -0.08 8.06 -2.91 -0.02 -0.10 16 41 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.19 5.50 3.36 -101.97 -0.34 5.16 16 43 H 0.04 1.79 7.48 -2.39 -0.02 1.78 16 44 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.07 2.49 7.01 -2.39 -0.02 2.48 16 Total: -1.00 -85.84 353.72 3.11 -82.73 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.69 Total: 9.60 kcal Atomic # 6 Polarization: 25.29 SS G_CDS: 8.90 Total: 34.20 kcal Atomic # 7 Polarization: -141.37 SS G_CDS: -8.46 Total: -149.83 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.06 Total: -24.42 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -85.84 3.11 -82.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036824057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.636 kcal (2) G-P(sol) polarization free energy of solvation -85.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds