Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99700 * 2 1 4 4 H 1.48496 * 109.47503 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46769 * 299.99540 * 3 2 1 6 6 H 1.48499 * 109.47235 * 59.99271 * 3 2 1 7 7 C 1.38804 * 120.00608 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00303 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99916 * 0.02562 * 7 2 1 10 10 C 1.47773 * 125.96017 * 0.02562 * 9 7 2 11 11 C 1.55099 * 104.91442 * 201.53315 * 10 9 7 12 12 C 1.56115 * 101.08046 * 322.94013 * 11 10 9 13 13 H 1.09001 * 112.18846 * 158.29556 * 12 11 10 14 14 C 1.53109 * 106.64936 * 281.15277 * 12 11 10 15 15 N 1.46690 * 109.12164 * 160.08047 * 14 12 11 16 16 C 1.34774 * 120.98121 * 121.19232 * 15 14 12 17 17 O 1.21555 * 119.99571 * 352.85791 * 16 15 14 18 18 C 1.47878 * 120.00262 * 172.84974 * 16 15 14 19 19 C 1.39903 * 125.69082 * 172.83094 * 18 16 15 20 20 C 1.38583 * 107.59129 * 179.89376 * 19 18 16 21 21 N 1.34116 * 132.34793 * 180.09111 * 20 19 18 22 22 C 1.31125 * 120.84319 * 180.29746 * 21 20 19 23 23 C 1.40340 * 120.30213 * 359.97438 * 22 21 20 24 24 C 1.35449 * 119.45917 * 0.02772 * 23 22 21 25 25 N 1.36669 * 119.14411 * 359.97438 * 24 23 22 26 26 N 1.32366 * 125.69475 * 353.14087 * 18 16 15 27 27 C 1.46536 * 118.04663 * 301.17382 * 15 14 12 28 28 C 1.51787 * 110.13518 * 53.76529 * 27 15 14 29 29 C 1.46248 * 125.96362 * 179.71229 * 9 7 2 30 30 H 1.09006 * 105.49881 * 70.64812 * 29 9 7 31 31 H 0.96998 * 120.00599 * 0.02562 * 1 2 3 32 32 H 1.09002 * 110.35310 * 320.39459 * 10 9 7 33 33 H 1.08998 * 110.35238 * 82.66929 * 10 9 7 34 34 H 1.08996 * 111.09678 * 80.89469 * 11 10 9 35 35 H 1.09003 * 111.09245 * 204.99107 * 11 10 9 36 36 H 1.09004 * 109.53197 * 279.97579 * 14 12 11 37 37 H 1.08999 * 109.52969 * 40.18762 * 14 12 11 38 38 H 1.07998 * 126.20726 * 0.04061 * 19 18 16 39 39 H 1.08005 * 119.84917 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.27287 * 179.97438 * 23 22 21 41 41 H 1.08007 * 120.42948 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.35927 * 173.96721 * 27 15 14 43 43 H 1.08996 * 109.35668 * 293.69638 * 27 15 14 44 44 H 1.09004 * 108.36092 * 79.85738 * 28 27 15 45 45 H 1.08996 * 108.36117 * 197.13355 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1440 -2.5416 -0.0005 11 6 -0.3966 -3.9694 0.5500 12 6 0.7958 -4.7514 -0.0857 13 1 1.0245 -5.6673 0.4591 14 6 0.4099 -5.0331 -1.5403 15 7 1.6234 -5.3228 -2.3119 16 6 1.7710 -6.4963 -2.9581 17 8 0.9538 -7.3826 -2.8026 18 6 2.9269 -6.7055 -3.8563 19 6 3.2742 -7.9129 -4.4719 20 6 4.4126 -7.6849 -5.2286 21 7 5.1538 -8.4850 -6.0091 22 6 6.2130 -8.0248 -6.6302 23 6 6.5891 -6.6803 -6.4875 24 6 5.8494 -5.8614 -5.7021 25 7 4.7499 -6.3646 -5.0651 26 7 3.8091 -5.7832 -4.2074 27 6 2.6703 -4.2986 -2.3598 28 6 3.0619 -3.8855 -0.9527 29 6 1.9215 -3.7236 -0.0049 30 1 2.3620 -3.8501 0.9842 31 1 -0.4851 0.8400 -0.0004 32 1 -0.6034 -1.7976 0.6503 33 1 -0.5338 -2.4518 -1.0145 34 1 -0.3408 -3.9858 1.6384 35 1 -1.3525 -4.3607 0.2018 36 1 -0.2606 -5.8916 -1.5797 37 1 -0.0893 -4.1600 -1.9605 38 1 2.7488 -8.8516 -4.3769 39 1 6.7981 -8.6833 -7.2551 40 1 7.4618 -6.3019 -6.9989 41 1 6.1248 -4.8241 -5.5809 42 1 3.5436 -4.6985 -2.8752 43 1 2.2993 -3.4277 -2.8999 44 1 3.7415 -4.6371 -0.5508 45 1 3.5961 -2.9371 -1.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036848695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = 119.317856 kcal Electronic energy + Delta-G solvation = -29918.705685 eV Core-core repulsion = 25939.260102 eV Total energy + Delta-G solvation = -3979.445583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.45419 -41.57792 -39.92557 -38.78754 -36.78029 -35.10046 -34.65314 -33.43605 -32.41731 -31.11237 -30.31347 -29.36643 -27.44235 -26.42930 -25.46407 -24.70712 -24.04041 -23.24145 -21.93467 -21.02859 -19.90486 -19.16496 -19.07408 -18.26062 -17.53285 -17.37781 -17.21987 -16.97195 -16.57688 -16.25065 -16.08565 -15.69377 -15.39810 -15.21105 -14.66654 -14.61845 -14.47219 -14.15119 -13.94986 -13.85202 -13.63355 -13.33011 -13.15862 -13.01856 -12.80442 -12.57263 -12.36287 -12.30487 -12.09170 -11.91281 -11.68285 -11.61307 -11.49541 -11.31764 -11.26487 -10.81067 -10.68668 -10.60131 -9.75090 -9.12312 -8.80312 -7.75761 -5.16166 -0.53403 -0.34384 0.65468 0.82440 1.47355 1.47807 1.57706 1.76045 2.04275 2.40585 2.50722 2.76900 2.83106 3.34919 3.47451 3.58299 3.63782 3.78368 3.81029 3.99405 4.00506 4.13434 4.20917 4.23750 4.33376 4.39173 4.45344 4.57071 4.58147 4.63118 4.70526 4.79184 4.88696 4.94280 5.03639 5.07466 5.12000 5.17870 5.23947 5.36858 5.39030 5.50209 5.54702 5.67289 5.84627 6.04151 6.25564 6.32151 6.56699 6.83071 7.13804 7.82373 8.48738 9.29133 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.003125 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.935451 B = 8958.287639 C =10513.380239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.224 4.224 8 H 0.083 0.917 9 N -0.609 5.609 10 C 0.160 3.840 11 C -0.127 4.127 12 C -0.095 4.095 13 H 0.100 0.900 14 C 0.125 3.875 15 N -0.585 5.585 16 C 0.595 3.405 17 O -0.553 6.553 18 C 0.064 3.936 19 C -0.230 4.230 20 C 0.251 3.749 21 N -0.493 5.493 22 C 0.190 3.810 23 C -0.187 4.187 24 C 0.132 3.868 25 N -0.309 5.309 26 N -0.295 5.295 27 C 0.108 3.892 28 C -0.128 4.128 29 C 0.167 3.833 30 H -0.002 1.002 31 H 0.245 0.755 32 H 0.064 0.936 33 H -0.009 1.009 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.167 0.833 39 H 0.228 0.772 40 H 0.223 0.777 41 H 0.208 0.792 42 H 0.131 0.869 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.790 -14.934 -14.161 25.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.353 4.353 8 H 0.101 0.899 9 N -0.334 5.334 10 C 0.035 3.965 11 C -0.166 4.166 12 C -0.115 4.115 13 H 0.118 0.882 14 C 0.003 3.997 15 N -0.316 5.316 16 C 0.381 3.619 17 O -0.430 6.430 18 C -0.093 4.093 19 C -0.262 4.262 20 C 0.023 3.977 21 N -0.206 5.206 22 C 0.007 3.993 23 C -0.210 4.210 24 C 0.001 3.999 25 N -0.081 5.081 26 N -0.126 5.126 27 C -0.015 4.015 28 C -0.168 4.168 29 C 0.060 3.940 30 H 0.016 0.984 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.009 0.991 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.185 0.815 39 H 0.245 0.755 40 H 0.239 0.761 41 H 0.225 0.775 42 H 0.147 0.853 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.134 -14.787 -13.793 25.257 hybrid contribution -0.058 1.407 0.216 1.424 sum 15.075 -13.381 -13.577 24.303 Atomic orbital electron populations 1.70092 1.06173 1.24769 1.58913 1.25546 0.96519 1.00701 1.03223 0.85060 0.78280 0.79851 0.76473 1.18925 1.22264 1.22262 1.19359 0.90960 0.83325 1.41645 0.89930 1.44742 1.02381 1.00260 1.86042 1.21695 0.84263 0.93845 0.96680 1.23153 0.97554 0.95771 1.00137 1.22271 0.96057 0.97693 0.95482 0.88190 1.21686 0.85932 1.01531 0.90504 1.47854 1.19820 1.15531 1.48348 1.17185 0.83538 0.81859 0.79279 1.90753 1.44296 1.42635 1.65329 1.21811 0.95501 0.93302 0.98643 1.20952 0.99583 0.99782 1.05895 1.20599 0.96989 0.81818 0.98317 1.68374 1.08347 1.34390 1.09449 1.24465 0.88919 0.95195 0.90673 1.22566 1.03620 0.93951 1.00867 1.23051 0.82767 1.03408 0.90722 1.47657 1.19682 1.09876 1.30932 1.77942 1.02980 1.18696 1.12991 1.21921 0.91751 0.90242 0.97558 1.21095 0.98776 1.01693 0.95193 1.19545 0.92810 0.85536 0.96093 0.98430 0.94569 0.91773 0.99120 0.91286 0.89408 0.88555 0.91756 0.81501 0.75539 0.76062 0.77481 0.85262 0.93187 0.91395 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.34 10.18 21.65 0.22 -56.12 16 2 C -0.07 -3.78 5.49 84.86 0.47 -3.31 16 3 Si 0.97 45.25 29.55 68.60 2.03 47.27 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 7 C -0.22 -12.17 9.59 84.03 0.81 -11.37 16 8 H 0.08 4.29 7.02 -2.91 -0.02 4.27 16 9 N -0.61 -30.58 3.32 -678.80 -2.25 -32.84 16 10 C 0.16 7.83 5.35 86.85 0.46 8.29 16 11 C -0.13 -4.76 6.47 32.39 0.21 -4.55 16 12 C -0.10 -3.41 3.70 -9.79 -0.04 -3.45 16 13 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 14 C 0.13 4.46 5.54 86.38 0.48 4.94 16 15 N -0.59 -20.59 2.94 -826.72 -2.43 -23.02 16 16 C 0.60 21.11 7.70 86.80 0.67 21.78 16 17 O -0.55 -21.65 16.34 -3.89 -0.06 -21.71 16 18 C 0.06 2.03 6.77 42.02 0.28 2.32 16 19 C -0.23 -6.72 10.66 22.76 0.24 -6.48 16 20 C 0.25 6.17 7.90 133.00 1.05 7.22 16 21 N -0.49 -9.19 10.48 -192.59 -2.02 -11.21 16 22 C 0.19 1.34 11.27 85.31 0.96 2.31 16 23 C -0.19 -0.63 10.05 22.14 0.22 -0.41 16 24 C 0.13 1.45 11.30 83.29 0.94 2.39 16 25 N -0.31 -6.90 3.90 -192.50 -0.75 -7.65 16 26 N -0.30 -8.48 9.12 -48.79 -0.45 -8.92 16 27 C 0.11 3.74 6.15 85.97 0.53 4.27 16 28 C -0.13 -4.66 5.60 28.97 0.16 -4.49 16 29 C 0.17 6.88 2.61 43.70 0.11 7.00 16 30 H 0.00 -0.09 8.05 -2.38 -0.02 -0.10 16 31 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.06 3.60 6.09 -2.39 -0.01 3.58 16 33 H -0.01 -0.48 7.10 -2.39 -0.02 -0.50 16 34 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.09 2.84 7.98 -2.39 -0.02 2.82 16 36 H 0.10 3.26 7.02 -2.39 -0.02 3.25 16 37 H 0.06 2.52 6.49 -2.39 -0.02 2.50 16 38 H 0.17 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.23 -0.64 8.06 -2.91 -0.02 -0.67 16 40 H 0.22 -1.56 8.06 -2.91 -0.02 -1.58 16 41 H 0.21 1.04 8.06 -2.91 -0.02 1.01 16 42 H 0.13 4.10 4.13 -32.32 -0.13 3.97 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.07 2.73 6.62 -2.39 -0.02 2.71 16 Total: -1.00 -78.35 356.93 2.75 -75.60 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.91 Total: 12.16 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 7.56 Total: 26.44 kcal Atomic # 7 Polarization: -132.09 SS G_CDS: -7.68 Total: -139.77 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.06 Total: -21.71 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -78.35 2.75 -75.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036848695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.916 kcal (2) G-P(sol) polarization free energy of solvation -78.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds