Wall clock time and date at job start Sat Apr 11 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00127 * 2 1 4 4 H 1.48500 * 109.47260 * 274.97720 * 3 2 1 5 5 H 1.48500 * 109.46633 * 34.97739 * 3 2 1 6 6 H 1.48499 * 109.47187 * 154.97442 * 3 2 1 7 7 C 1.38812 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99610 * 188.84802 * 7 2 1 9 9 N 1.36938 * 120.00099 * 8.85208 * 7 2 1 10 10 C 1.48160 * 126.40431 * 356.99936 * 9 7 2 11 11 C 1.55281 * 107.03956 * 175.09954 * 10 9 7 12 12 C 1.53739 * 101.84815 * 337.51919 * 11 10 9 13 13 H 1.08994 * 111.30484 * 281.04281 * 12 11 10 14 14 C 1.52239 * 114.74966 * 152.76418 * 12 11 10 15 15 N 1.47728 * 106.35702 * 190.40448 * 14 12 11 16 16 C 1.34776 * 119.67644 * 232.05194 * 15 14 12 17 17 O 1.21556 * 119.99493 * 172.56191 * 16 15 14 18 18 C 1.47877 * 120.00571 * 352.56371 * 16 15 14 19 19 C 1.39902 * 125.69258 * 172.75512 * 18 16 15 20 20 C 1.38584 * 107.58907 * 179.86924 * 19 18 16 21 21 N 1.34112 * 132.33560 * 180.02562 * 20 19 18 22 22 C 1.31135 * 120.83789 * 180.35988 * 21 20 19 23 23 C 1.40342 * 120.29813 * 359.97438 * 22 21 20 24 24 C 1.35450 * 119.46405 * 0.02562 * 23 22 21 25 25 N 1.36669 * 119.14315 * 359.97438 * 24 23 22 26 26 N 1.32370 * 125.69059 * 353.06369 * 18 16 15 27 27 C 1.46590 * 120.63302 * 52.05059 * 15 14 12 28 28 C 1.53952 * 110.58522 * 312.18741 * 27 15 14 29 29 C 1.45471 * 126.40234 * 177.02226 * 9 7 2 30 30 H 1.09001 * 109.26670 * 93.76522 * 29 9 7 31 31 H 0.97006 * 120.00219 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.91712 * 55.75196 * 10 9 7 33 33 H 1.08995 * 110.08218 * 294.54619 * 10 9 7 34 34 H 1.09006 * 110.95235 * 219.37896 * 11 10 9 35 35 H 1.09008 * 110.95461 * 95.66262 * 11 10 9 36 36 H 1.08999 * 110.07113 * 309.61071 * 14 12 11 37 37 H 1.08999 * 110.07367 * 71.18981 * 14 12 11 38 38 H 1.08001 * 126.20126 * 359.97438 * 19 18 16 39 39 H 1.08001 * 119.84706 * 180.02562 * 22 21 20 40 40 H 1.07994 * 120.26563 * 180.02562 * 23 22 21 41 41 H 1.08003 * 120.43015 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.25310 * 191.90690 * 27 15 14 43 43 H 1.09002 * 109.25395 * 72.47325 * 27 15 14 44 44 H 1.09008 * 109.88448 * 291.58992 * 28 27 15 45 45 H 1.08995 * 109.94680 * 170.54660 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5041 2.6200 0.8026 6 1 3.5964 1.4121 0.5923 7 6 2.0102 -1.2022 -0.0005 8 1 3.0806 -1.2077 0.1433 9 7 1.3377 -2.3809 -0.1836 10 6 -0.1275 -2.5437 -0.3308 11 6 -0.3902 -4.0428 -0.6389 12 6 0.9671 -4.4912 -1.2049 13 1 1.0832 -4.1849 -2.2445 14 6 1.2820 -5.9680 -1.0110 15 7 2.7015 -6.1427 -1.3807 16 6 3.0468 -7.0922 -2.2727 17 8 4.1892 -7.1536 -2.6834 18 6 2.0359 -8.0592 -2.7519 19 6 2.2224 -8.9958 -3.7744 20 6 1.0407 -9.7066 -3.9119 21 7 0.6773 -10.7051 -4.7301 22 6 -0.5279 -11.2183 -4.6703 23 6 -1.4611 -10.7282 -3.7437 24 6 -1.1070 -9.7199 -2.9115 25 7 0.1550 -9.2016 -2.9930 26 7 0.8016 -8.1793 -2.2889 27 6 3.7381 -5.2932 -0.7868 28 6 3.3247 -3.8115 -0.8486 29 6 1.9285 -3.7075 -0.2693 30 1 1.9224 -4.1685 0.7184 31 1 -0.4851 0.8401 -0.0004 32 1 -0.4889 -1.9266 -1.1534 33 1 -0.6303 -2.2609 0.5940 34 1 -1.1792 -4.1555 -1.3825 35 1 -0.6333 -4.5911 0.2714 36 1 1.1296 -6.2492 0.0310 37 1 0.6492 -6.5738 -1.6596 38 1 3.1244 -9.1399 -4.3506 39 1 -0.8034 -12.0224 -5.3367 40 1 -2.4534 -11.1515 -3.6946 41 1 -1.8128 -9.3304 -2.1927 42 1 4.6711 -5.4291 -1.3337 43 1 3.8867 -5.5818 0.2538 44 1 3.3230 -3.4699 -1.8838 45 1 4.0159 -3.2078 -0.2605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036848698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:53 Heat of formation + Delta-G solvation = 139.079014 kcal Electronic energy + Delta-G solvation = -29712.685885 eV Core-core repulsion = 25734.097211 eV Total energy + Delta-G solvation = -3978.588675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.66075 -40.28183 -38.56782 -37.89304 -35.33619 -34.40574 -32.58379 -32.35327 -31.11403 -29.55815 -29.48891 -28.09202 -25.93449 -24.91092 -24.26727 -23.33205 -22.79185 -21.65849 -20.12434 -19.89528 -19.21527 -18.38691 -18.05235 -16.88469 -16.58979 -16.46501 -15.81630 -15.59886 -15.14009 -14.97125 -14.84356 -14.35942 -14.08808 -13.81081 -13.58764 -13.40739 -13.26561 -13.10794 -12.85172 -12.58184 -12.32472 -11.97285 -11.62934 -11.55997 -11.42949 -11.16535 -10.84815 -10.75152 -10.63479 -10.33637 -10.23628 -10.10989 -9.99975 -9.90210 -9.86415 -9.62623 -9.31718 -8.60111 -8.55996 -8.28862 -6.84211 -5.73779 -3.04087 0.09695 0.36199 1.56306 1.60556 2.87536 2.97506 3.24126 3.40478 3.46259 3.47574 3.48271 3.67670 3.97401 4.35463 4.48854 4.50214 4.80329 4.91449 5.01955 5.10125 5.22100 5.30020 5.37171 5.41441 5.52242 5.56991 5.60341 5.74195 5.85330 5.88323 5.93688 5.95980 6.11756 6.17088 6.22476 6.27025 6.41885 6.46338 6.59755 6.66058 6.85171 6.91667 7.07494 7.19999 7.37878 7.55108 7.59065 7.79945 8.05827 8.23211 9.18933 9.82948 10.51048 11.39856 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002724 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.403386 B =10274.943915 C =11259.768882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.133 4.133 12 C -0.125 4.125 13 H 0.079 0.921 14 C 0.104 3.896 15 N -0.588 5.588 16 C 0.592 3.408 17 O -0.527 6.527 18 C 0.082 3.918 19 C -0.201 4.201 20 C 0.250 3.750 21 N -0.458 5.458 22 C 0.178 3.822 23 C -0.224 4.224 24 C 0.164 3.836 25 N -0.310 5.310 26 N -0.271 5.271 27 C 0.116 3.884 28 C -0.129 4.129 29 C 0.167 3.833 30 H 0.020 0.980 31 H 0.252 0.748 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.172 0.828 39 H 0.181 0.819 40 H 0.169 0.831 41 H 0.182 0.818 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.972 -23.684 -6.240 24.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.172 4.172 12 C -0.145 4.145 13 H 0.097 0.903 14 C -0.019 4.019 15 N -0.319 5.319 16 C 0.376 3.624 17 O -0.402 6.402 18 C -0.076 4.076 19 C -0.232 4.232 20 C 0.024 3.976 21 N -0.169 5.169 22 C -0.007 4.007 23 C -0.248 4.248 24 C 0.030 3.970 25 N -0.082 5.082 26 N -0.101 5.101 27 C -0.007 4.007 28 C -0.168 4.168 29 C 0.059 3.941 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.190 0.810 39 H 0.198 0.802 40 H 0.186 0.814 41 H 0.200 0.800 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.331 -23.062 -6.041 24.231 hybrid contribution 0.068 0.932 0.058 0.936 sum -4.263 -22.130 -5.983 23.318 Atomic orbital electron populations 1.69961 1.04937 1.25043 1.56773 1.24787 0.95638 0.97617 1.02316 0.86167 0.78766 0.83802 0.77493 1.21680 1.21845 1.20611 1.19011 0.91417 0.82594 1.42331 0.90292 1.44198 1.02134 1.00665 1.84894 1.21499 0.84219 0.88664 1.00321 1.22689 0.95211 0.99888 0.99440 1.22638 0.97901 0.93320 1.00653 0.90277 1.22496 0.79821 0.97690 1.01903 1.48197 1.09441 1.32901 1.41409 1.17046 0.85932 0.80180 0.79271 1.90796 1.19332 1.72813 1.57226 1.22175 0.92245 0.97116 0.96096 1.20956 0.98197 0.99780 1.04230 1.20555 0.91851 0.94723 0.90508 1.68259 1.18892 1.08342 1.21386 1.23452 0.87242 0.95880 0.94139 1.21875 1.03727 0.99863 0.99335 1.22160 0.83896 0.92630 0.98346 1.47533 1.10312 1.24630 1.25718 1.78246 1.06995 1.05462 1.19382 1.21749 0.90652 0.90300 0.97963 1.21892 0.98997 0.93454 1.02433 1.20660 0.91175 0.87667 0.94640 0.96294 0.93793 0.93208 0.94092 0.92236 0.92278 0.91002 0.86432 0.81020 0.80197 0.81355 0.80040 0.89031 0.91474 0.91337 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.51 55.49 0.58 -26.31 16 2 C -0.01 -0.20 5.47 -17.43 -0.10 -0.30 16 3 Si 0.91 22.11 29.56 -169.99 -5.03 17.09 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.17 9.85 -15.06 -0.15 -6.32 16 8 H 0.08 2.09 7.26 -52.48 -0.38 1.71 16 9 N -0.59 -14.85 3.35 -163.10 -0.55 -15.40 16 10 C 0.18 4.23 5.45 -1.92 -0.01 4.22 16 11 C -0.13 -2.41 6.53 -25.14 -0.16 -2.58 16 12 C -0.12 -2.21 2.86 -89.37 -0.26 -2.46 16 13 H 0.08 1.53 8.12 -51.93 -0.42 1.11 16 14 C 0.10 1.55 5.53 -3.76 -0.02 1.53 16 15 N -0.59 -9.22 3.00 -173.59 -0.52 -9.74 16 16 C 0.59 9.59 7.66 -12.32 -0.09 9.50 16 17 O -0.53 -9.61 16.23 5.32 0.09 -9.53 16 18 C 0.08 1.20 6.74 -83.07 -0.56 0.64 16 19 C -0.20 -2.72 10.66 -38.83 -0.41 -3.14 16 20 C 0.25 3.03 7.90 -155.42 -1.23 1.81 16 21 N -0.46 -4.63 10.48 -12.22 -0.13 -4.76 16 22 C 0.18 0.99 11.27 -17.06 -0.19 0.80 16 23 C -0.22 -0.89 10.05 -39.79 -0.40 -1.29 16 24 C 0.16 1.07 11.30 -16.39 -0.19 0.88 16 25 N -0.31 -3.43 3.90 -12.20 -0.05 -3.48 16 26 N -0.27 -3.60 9.04 33.23 0.30 -3.30 16 27 C 0.12 1.79 6.35 -3.50 -0.02 1.77 16 28 C -0.13 -2.32 5.49 -26.98 -0.15 -2.47 16 29 C 0.17 3.37 2.57 -67.98 -0.17 3.20 16 30 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.05 1.32 7.31 -51.93 -0.38 0.94 16 33 H 0.04 1.07 7.72 -51.93 -0.40 0.67 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.98 8.12 -51.92 -0.42 0.56 16 36 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.12 1.70 4.20 -78.84 -0.33 1.37 16 38 H 0.17 2.19 8.06 -52.49 -0.42 1.76 16 39 H 0.18 0.28 8.06 -52.49 -0.42 -0.15 16 40 H 0.17 0.00 8.06 -52.49 -0.42 -0.42 16 41 H 0.18 0.64 8.06 -52.48 -0.42 0.21 16 42 H 0.09 1.41 6.92 -51.93 -0.36 1.05 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 1.32 8.12 -51.92 -0.42 0.90 16 45 H 0.08 1.42 7.63 -51.93 -0.40 1.02 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -34.71 361.31 -9.98 -44.69 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.02 Total: -0.49 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -4.11 Total: 5.79 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.36 Total: -62.99 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.71 -9.98 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036848698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.771 kcal (2) G-P(sol) polarization free energy of solvation -34.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds