Wall clock time and date at job start Sat Apr 11 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00127 * 2 1 4 4 H 1.48500 * 109.47260 * 274.97720 * 3 2 1 5 5 H 1.48500 * 109.46633 * 34.97739 * 3 2 1 6 6 H 1.48499 * 109.47187 * 154.97442 * 3 2 1 7 7 C 1.38812 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99610 * 188.84802 * 7 2 1 9 9 N 1.36938 * 120.00099 * 8.85208 * 7 2 1 10 10 C 1.48160 * 126.40431 * 356.99936 * 9 7 2 11 11 C 1.55281 * 107.03956 * 175.09954 * 10 9 7 12 12 C 1.53739 * 101.84815 * 337.51919 * 11 10 9 13 13 H 1.08994 * 111.30484 * 281.04281 * 12 11 10 14 14 C 1.52239 * 114.74966 * 152.76418 * 12 11 10 15 15 N 1.47728 * 106.35702 * 190.40448 * 14 12 11 16 16 C 1.34776 * 119.67644 * 232.05194 * 15 14 12 17 17 O 1.21556 * 119.99493 * 172.56191 * 16 15 14 18 18 C 1.47877 * 120.00571 * 352.56371 * 16 15 14 19 19 C 1.39902 * 125.69258 * 172.75512 * 18 16 15 20 20 C 1.38584 * 107.58907 * 179.86924 * 19 18 16 21 21 N 1.34112 * 132.33560 * 180.02562 * 20 19 18 22 22 C 1.31135 * 120.83789 * 180.35988 * 21 20 19 23 23 C 1.40342 * 120.29813 * 359.97438 * 22 21 20 24 24 C 1.35450 * 119.46405 * 0.02562 * 23 22 21 25 25 N 1.36669 * 119.14315 * 359.97438 * 24 23 22 26 26 N 1.32370 * 125.69059 * 353.06369 * 18 16 15 27 27 C 1.46590 * 120.63302 * 52.05059 * 15 14 12 28 28 C 1.53952 * 110.58522 * 312.18741 * 27 15 14 29 29 C 1.45471 * 126.40234 * 177.02226 * 9 7 2 30 30 H 1.09001 * 109.26670 * 93.76522 * 29 9 7 31 31 H 0.97006 * 120.00219 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.91712 * 55.75196 * 10 9 7 33 33 H 1.08995 * 110.08218 * 294.54619 * 10 9 7 34 34 H 1.09006 * 110.95235 * 219.37896 * 11 10 9 35 35 H 1.09008 * 110.95461 * 95.66262 * 11 10 9 36 36 H 1.08999 * 110.07113 * 309.61071 * 14 12 11 37 37 H 1.08999 * 110.07367 * 71.18981 * 14 12 11 38 38 H 1.08001 * 126.20126 * 359.97438 * 19 18 16 39 39 H 1.08001 * 119.84706 * 180.02562 * 22 21 20 40 40 H 1.07994 * 120.26563 * 180.02562 * 23 22 21 41 41 H 1.08003 * 120.43015 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.25310 * 191.90690 * 27 15 14 43 43 H 1.09002 * 109.25395 * 72.47325 * 27 15 14 44 44 H 1.09008 * 109.88448 * 291.58992 * 28 27 15 45 45 H 1.08995 * 109.94680 * 170.54660 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5041 2.6200 0.8026 6 1 3.5964 1.4121 0.5923 7 6 2.0102 -1.2022 -0.0005 8 1 3.0806 -1.2077 0.1433 9 7 1.3377 -2.3809 -0.1836 10 6 -0.1275 -2.5437 -0.3308 11 6 -0.3902 -4.0428 -0.6389 12 6 0.9671 -4.4912 -1.2049 13 1 1.0832 -4.1849 -2.2445 14 6 1.2820 -5.9680 -1.0110 15 7 2.7015 -6.1427 -1.3807 16 6 3.0468 -7.0922 -2.2727 17 8 4.1892 -7.1536 -2.6834 18 6 2.0359 -8.0592 -2.7519 19 6 2.2224 -8.9958 -3.7744 20 6 1.0407 -9.7066 -3.9119 21 7 0.6773 -10.7051 -4.7301 22 6 -0.5279 -11.2183 -4.6703 23 6 -1.4611 -10.7282 -3.7437 24 6 -1.1070 -9.7199 -2.9115 25 7 0.1550 -9.2016 -2.9930 26 7 0.8016 -8.1793 -2.2889 27 6 3.7381 -5.2932 -0.7868 28 6 3.3247 -3.8115 -0.8486 29 6 1.9285 -3.7075 -0.2693 30 1 1.9224 -4.1685 0.7184 31 1 -0.4851 0.8401 -0.0004 32 1 -0.4889 -1.9266 -1.1534 33 1 -0.6303 -2.2609 0.5940 34 1 -1.1792 -4.1555 -1.3825 35 1 -0.6333 -4.5911 0.2714 36 1 1.1296 -6.2492 0.0310 37 1 0.6492 -6.5738 -1.6596 38 1 3.1244 -9.1399 -4.3506 39 1 -0.8034 -12.0224 -5.3367 40 1 -2.4534 -11.1515 -3.6946 41 1 -1.8128 -9.3304 -2.1927 42 1 4.6711 -5.4291 -1.3337 43 1 3.8867 -5.5818 0.2538 44 1 3.3230 -3.4699 -1.8838 45 1 4.0159 -3.2078 -0.2605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036848698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:52 Heat of formation + Delta-G solvation = 116.741224 kcal Electronic energy + Delta-G solvation = -29713.654525 eV Core-core repulsion = 25734.097211 eV Total energy + Delta-G solvation = -3979.557314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.43057 -41.54926 -39.89918 -38.80215 -36.85830 -35.07340 -34.45281 -33.62254 -32.12751 -31.27165 -30.28556 -29.64045 -27.16081 -26.26728 -25.37789 -24.47584 -23.95618 -22.84221 -21.84005 -21.31213 -20.39915 -19.16900 -19.07821 -18.39855 -17.49342 -17.31610 -17.17446 -16.84654 -16.52821 -16.31820 -15.91356 -15.68154 -15.45558 -15.09274 -14.84487 -14.66702 -14.35426 -14.16156 -13.94002 -13.79247 -13.64550 -13.42128 -13.16892 -13.12130 -12.74578 -12.66314 -12.33767 -12.15799 -12.11255 -11.99412 -11.84594 -11.61322 -11.50001 -11.44679 -11.07436 -10.74635 -10.67645 -10.51600 -9.85276 -9.09376 -8.88132 -7.86547 -5.17726 -0.50815 -0.32405 0.67551 0.85120 1.44368 1.46327 1.54458 1.73318 2.06330 2.42878 2.49315 2.75568 2.85656 3.32184 3.44324 3.47983 3.61791 3.81358 3.93069 4.00442 4.03469 4.16890 4.20096 4.25330 4.34438 4.40112 4.46517 4.47207 4.64193 4.64710 4.71212 4.81432 4.85216 4.90743 4.97974 5.06803 5.10619 5.15535 5.16805 5.33989 5.47637 5.51105 5.55892 5.66649 5.75703 6.02348 6.19739 6.21350 6.59348 6.83798 7.09141 7.78916 8.47309 9.26342 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002724 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.403386 B =10274.943915 C =11259.768882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.231 4.231 8 H 0.084 0.916 9 N -0.616 5.616 10 C 0.181 3.819 11 C -0.115 4.115 12 C -0.110 4.110 13 H 0.060 0.940 14 C 0.116 3.884 15 N -0.591 5.591 16 C 0.592 3.408 17 O -0.556 6.556 18 C 0.063 3.937 19 C -0.234 4.234 20 C 0.251 3.749 21 N -0.496 5.496 22 C 0.189 3.811 23 C -0.189 4.189 24 C 0.136 3.864 25 N -0.308 5.308 26 N -0.287 5.287 27 C 0.123 3.877 28 C -0.120 4.120 29 C 0.157 3.843 30 H 0.025 0.975 31 H 0.246 0.754 32 H 0.012 0.988 33 H 0.009 0.991 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.163 0.837 39 H 0.226 0.774 40 H 0.222 0.778 41 H 0.213 0.787 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 -26.996 -6.562 28.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.219 1.219 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.360 4.360 8 H 0.101 0.899 9 N -0.340 5.340 10 C 0.057 3.943 11 C -0.154 4.154 12 C -0.130 4.130 13 H 0.078 0.922 14 C -0.007 4.007 15 N -0.321 5.321 16 C 0.378 3.622 17 O -0.433 6.433 18 C -0.093 4.093 19 C -0.266 4.266 20 C 0.022 3.978 21 N -0.209 5.209 22 C 0.006 3.994 23 C -0.212 4.212 24 C 0.004 3.996 25 N -0.081 5.081 26 N -0.118 5.118 27 C 0.001 3.999 28 C -0.159 4.159 29 C 0.050 3.950 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.027 0.973 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.148 0.852 38 H 0.181 0.819 39 H 0.242 0.758 40 H 0.239 0.761 41 H 0.230 0.770 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.068 0.932 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.249 -26.417 -6.353 27.879 hybrid contribution 0.450 1.708 0.054 1.767 sum -5.799 -24.708 -6.299 26.150 Atomic orbital electron populations 1.70163 1.06235 1.25142 1.58387 1.25575 0.96504 1.00772 1.03104 0.85170 0.78057 0.79784 0.77071 1.21889 1.22214 1.19163 1.19376 0.91873 0.83818 1.40950 0.89865 1.44489 1.02980 1.01817 1.84732 1.21304 0.83616 0.92102 0.97305 1.22547 0.96039 0.95602 1.01173 1.22481 0.96797 0.94957 0.98789 0.92194 1.22459 0.79645 0.95380 1.03168 1.48231 1.09678 1.32850 1.41390 1.17281 0.86002 0.80276 0.78635 1.90762 1.20714 1.73714 1.58154 1.21788 0.92710 0.97576 0.97235 1.20943 0.99203 1.01249 1.05219 1.20567 0.91611 0.94878 0.90708 1.68369 1.21495 1.08897 1.22119 1.24445 0.85777 0.95271 0.93859 1.22562 1.05155 0.97275 0.96245 1.23080 0.82727 0.93632 1.00156 1.47661 1.11535 1.23926 1.24933 1.77958 1.06441 1.07074 1.20313 1.21660 0.90633 0.88421 0.99173 1.21779 0.97806 0.95409 1.00917 1.20882 0.92840 0.85793 0.95524 0.95734 0.94508 0.96952 0.97285 0.90046 0.89878 0.89457 0.85173 0.81898 0.75782 0.76105 0.77036 0.89032 0.89459 0.93212 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.73 10.51 21.65 0.23 -57.50 16 2 C -0.07 -3.84 5.47 84.86 0.46 -3.37 16 3 Si 0.97 46.54 29.56 68.60 2.03 48.57 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.23 -12.95 9.85 84.03 0.83 -12.13 16 8 H 0.08 4.46 7.26 -2.91 -0.02 4.44 16 9 N -0.62 -31.54 3.35 -669.92 -2.24 -33.78 16 10 C 0.18 8.93 5.45 86.84 0.47 9.40 16 11 C -0.12 -4.05 6.53 31.63 0.21 -3.85 16 12 C -0.11 -3.84 2.86 -9.98 -0.03 -3.86 16 13 H 0.06 2.34 8.12 -2.39 -0.02 2.32 16 14 C 0.12 3.31 5.53 85.89 0.48 3.79 16 15 N -0.59 -18.32 3.00 -821.39 -2.46 -20.79 16 16 C 0.59 19.56 7.66 86.80 0.66 20.23 16 17 O -0.56 -21.03 16.23 -3.89 -0.06 -21.09 16 18 C 0.06 1.88 6.74 42.02 0.28 2.16 16 19 C -0.23 -6.59 10.66 22.76 0.24 -6.35 16 20 C 0.25 5.86 7.90 133.00 1.05 6.91 16 21 N -0.50 -8.93 10.48 -192.58 -2.02 -10.95 16 22 C 0.19 1.21 11.27 85.31 0.96 2.17 16 23 C -0.19 -0.40 10.05 22.14 0.22 -0.18 16 24 C 0.14 1.20 11.30 83.29 0.94 2.14 16 25 N -0.31 -6.20 3.90 -192.51 -0.75 -6.95 16 26 N -0.29 -7.31 9.04 -48.79 -0.44 -7.75 16 27 C 0.12 3.78 6.35 86.68 0.55 4.33 16 28 C -0.12 -4.37 5.49 30.43 0.17 -4.21 16 29 C 0.16 6.34 2.57 45.51 0.12 6.45 16 30 H 0.03 1.01 7.92 -2.39 -0.02 0.99 16 31 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 32 H 0.01 0.68 7.31 -2.39 -0.02 0.66 16 33 H 0.01 0.49 7.72 -2.39 -0.02 0.47 16 34 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 35 H 0.08 2.56 8.12 -2.38 -0.02 2.54 16 36 H 0.09 2.27 8.08 -2.39 -0.02 2.25 16 37 H 0.13 3.55 4.20 -37.58 -0.16 3.39 16 38 H 0.16 4.55 8.06 -2.91 -0.02 4.52 16 39 H 0.23 -0.71 8.06 -2.91 -0.02 -0.73 16 40 H 0.22 -1.81 8.06 -2.91 -0.02 -1.83 16 41 H 0.21 0.45 8.06 -2.91 -0.02 0.42 16 42 H 0.09 2.84 6.92 -2.39 -0.02 2.83 16 43 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.05 1.98 8.12 -2.38 -0.02 1.96 16 45 H 0.08 2.76 7.63 -2.39 -0.02 2.74 16 Total: -1.00 -81.91 361.31 2.76 -79.15 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.87 Total: 7.46 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 7.62 Total: 23.63 kcal Atomic # 7 Polarization: -130.03 SS G_CDS: -7.69 Total: -137.72 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.06 Total: -21.09 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -81.91 2.76 -79.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036848698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.889 kcal (2) G-P(sol) polarization free energy of solvation -81.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds