Wall clock time and date at job start Sat Apr 11 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00354 * 2 1 4 4 H 1.48503 * 109.47035 * 269.99734 * 3 2 1 5 5 H 1.48500 * 109.46908 * 29.99457 * 3 2 1 6 6 H 1.48493 * 109.47221 * 149.99785 * 3 2 1 7 7 C 1.38812 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00299 * 196.92199 * 7 2 1 9 9 N 1.37073 * 119.99874 * 16.92091 * 7 2 1 10 10 C 1.44809 * 120.09417 * 205.90192 * 9 7 2 11 11 C 1.51428 * 113.01844 * 268.40282 * 10 9 7 12 12 C 1.51173 * 114.24522 * 296.62235 * 11 10 9 13 13 H 1.09760 * 110.65680 * 178.38380 * 12 11 10 14 14 C 1.54107 * 108.49574 * 300.23893 * 12 11 10 15 15 C 1.53988 * 104.86339 * 93.31574 * 14 12 11 16 16 C 1.52117 * 105.57031 * 10.98053 * 15 14 12 17 17 H 1.09384 * 108.29537 * 123.73170 * 16 15 14 18 18 C 1.49294 * 120.13193 * 25.64880 * 9 7 2 19 19 N 1.47730 * 109.46350 * 5.88390 * 16 15 14 20 20 C 1.35005 * 127.13037 * 158.36911 * 19 16 15 21 21 O 1.21556 * 119.99770 * 179.75108 * 20 19 16 22 22 C 1.47881 * 120.00150 * 0.02562 * 20 19 16 23 23 C 1.39905 * 125.68942 * 179.72091 * 22 20 19 24 24 C 1.38588 * 107.58431 * 179.83519 * 23 22 20 25 25 N 1.34115 * 132.34106 * 180.08758 * 24 23 22 26 26 C 1.31126 * 120.84330 * 180.35982 * 25 24 23 27 27 C 1.40342 * 120.30094 * 0.02602 * 26 25 24 28 28 C 1.35455 * 119.46030 * 359.95436 * 27 26 25 29 29 N 1.36676 * 119.14136 * 0.03819 * 28 27 26 30 30 N 1.32371 * 125.69225 * 0.02562 * 22 20 19 31 31 H 0.97003 * 119.99932 * 0.02562 * 1 2 3 32 32 H 1.08895 * 109.16771 * 146.57717 * 10 9 7 33 33 H 1.09338 * 108.42164 * 28.85986 * 10 9 7 34 34 H 1.09339 * 108.47095 * 175.45033 * 11 10 9 35 35 H 1.09166 * 108.71447 * 58.36132 * 11 10 9 36 36 H 1.09279 * 110.69447 * 334.03888 * 14 12 11 37 37 H 1.09364 * 110.55536 * 212.38648 * 14 12 11 38 38 H 1.09059 * 110.62331 * 251.41132 * 15 14 12 39 39 H 1.09278 * 110.29404 * 129.88936 * 15 14 12 40 40 H 1.09061 * 109.65399 * 13.08375 * 18 9 7 41 41 H 1.09153 * 109.45771 * 253.40188 * 18 9 7 42 42 H 1.07989 * 126.20687 * 359.97438 * 23 22 20 43 43 H 1.08001 * 119.85208 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.27319 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.43133 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2223 0.2728 9 7 1.3693 -2.3637 -0.3445 10 6 1.8467 -3.6340 0.1607 11 6 2.8451 -4.3008 -0.7622 12 6 2.2845 -4.6779 -2.1146 13 1 3.0624 -5.1290 -2.7440 14 6 1.1133 -5.6568 -1.9027 15 6 -0.1427 -4.7668 -1.8616 16 6 0.3161 -3.3914 -2.3216 17 1 -0.2954 -3.0942 -3.1785 18 6 0.1736 -2.3231 -1.2375 19 7 1.7248 -3.4639 -2.7608 20 6 2.3655 -2.6106 -3.5879 21 8 3.5359 -2.7925 -3.8608 22 6 1.6450 -1.4513 -4.1570 23 6 2.1911 -0.4935 -5.0181 24 6 1.1906 0.4165 -5.3207 25 7 1.1708 1.5145 -6.0906 26 6 0.0784 2.2290 -6.2146 27 6 -1.0934 1.8540 -5.5394 28 6 -1.0873 0.7470 -4.7588 29 7 0.0637 0.0187 -4.6457 30 7 0.3773 -1.1436 -3.9321 31 1 -0.4850 0.8401 -0.0004 32 1 0.9985 -4.2996 0.3137 33 1 2.3264 -3.4629 1.1283 34 1 3.2157 -5.2068 -0.2751 35 1 3.6919 -3.6274 -0.9074 36 1 1.2298 -6.2005 -0.9620 37 1 1.0517 -6.3671 -2.7319 38 1 -0.5450 -4.7166 -0.8491 39 1 -0.9049 -5.1553 -2.5416 40 1 0.0936 -1.3382 -1.6989 41 1 -0.7257 -2.5168 -0.6500 42 1 3.2073 -0.4690 -5.3828 43 1 0.0805 3.1106 -6.8385 44 1 -1.9928 2.4431 -5.6415 45 1 -1.9803 0.4438 -4.2325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039456720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:14 Heat of formation + Delta-G solvation = 112.543901 kcal Electronic energy + Delta-G solvation = -31800.910484 eV Core-core repulsion = 27821.171161 eV Total energy + Delta-G solvation = -3979.739324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.36909 -41.56833 -39.51126 -38.62623 -36.41500 -35.07403 -34.33565 -33.03320 -32.76175 -31.84228 -30.22658 -28.78490 -27.29761 -26.24369 -25.79083 -24.97784 -23.85559 -22.41180 -22.29234 -20.91676 -20.00535 -19.15107 -19.04879 -18.28745 -17.49662 -17.27908 -17.06665 -16.88545 -16.61947 -16.10582 -15.87627 -15.43412 -15.36118 -14.97914 -14.65321 -14.56535 -14.41369 -14.08421 -13.86935 -13.69873 -13.52280 -13.39757 -13.17767 -12.95636 -12.82577 -12.54922 -12.44317 -12.33481 -12.22634 -11.98476 -11.90637 -11.55421 -11.48670 -11.35467 -10.95231 -10.83216 -10.61689 -10.45935 -9.59385 -9.07402 -8.67597 -7.92042 -5.29001 -0.49161 -0.27179 0.73927 0.93427 1.25727 1.29855 1.36704 1.82025 2.24520 2.40328 2.42574 2.84107 2.87942 3.21377 3.49307 3.56893 3.69571 3.77747 3.88414 4.03203 4.06886 4.18857 4.23293 4.28678 4.35439 4.46972 4.50382 4.61086 4.68610 4.70129 4.82382 4.96414 5.02759 5.06507 5.07590 5.10122 5.12455 5.20860 5.24694 5.38069 5.42907 5.52632 5.57162 5.69825 5.85119 6.13655 6.38406 6.49903 6.56772 7.00818 7.13873 7.90680 8.35217 9.13800 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.005980 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.604987 B = 4680.759690 C = 5900.239044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.029 4.029 3 Si 0.930 3.070 4 H -0.308 1.308 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.042 0.958 9 N -0.598 5.598 10 C 0.154 3.846 11 C -0.144 4.144 12 C 0.135 3.865 13 H 0.084 0.916 14 C -0.110 4.110 15 C -0.115 4.115 16 C 0.109 3.891 17 H 0.074 0.926 18 C 0.170 3.830 19 N -0.570 5.570 20 C 0.614 3.386 21 O -0.573 6.573 22 C 0.065 3.935 23 C -0.247 4.247 24 C 0.244 3.756 25 N -0.495 5.495 26 C 0.187 3.813 27 C -0.194 4.194 28 C 0.134 3.866 29 N -0.310 5.310 30 N -0.267 5.267 31 H 0.247 0.753 32 H 0.060 0.940 33 H 0.029 0.971 34 H 0.098 0.902 35 H 0.017 0.983 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.014 0.986 42 H 0.159 0.841 43 H 0.232 0.768 44 H 0.225 0.775 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.928 -3.334 -11.135 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.225 4.225 3 Si 0.761 3.239 4 H -0.237 1.237 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.060 0.940 9 N -0.320 5.320 10 C 0.027 3.973 11 C -0.185 4.185 12 C 0.033 3.967 13 H 0.103 0.897 14 C -0.148 4.148 15 C -0.153 4.153 16 C 0.004 3.996 17 H 0.092 0.908 18 C 0.044 3.956 19 N -0.300 5.300 20 C 0.401 3.599 21 O -0.452 6.452 22 C -0.094 4.094 23 C -0.279 4.279 24 C 0.017 3.983 25 N -0.208 5.208 26 C 0.004 3.996 27 C -0.217 4.217 28 C 0.002 3.998 29 N -0.083 5.083 30 N -0.097 5.097 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.117 0.883 35 H 0.036 0.964 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.032 0.968 42 H 0.177 0.823 43 H 0.248 0.752 44 H 0.242 0.758 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.491 -3.658 -10.949 14.330 hybrid contribution 0.996 1.506 0.295 1.829 sum -7.496 -2.152 -10.653 13.203 Atomic orbital electron populations 1.70107 1.05267 1.24920 1.55649 1.25224 0.95867 0.99427 1.02011 0.85818 0.79060 0.82550 0.76466 1.23706 1.20639 1.20106 1.19187 0.91943 0.86881 1.39837 0.94038 1.44143 1.32635 1.01410 1.53856 1.20169 0.95965 0.87168 0.94011 1.21965 0.99189 1.00800 0.96505 1.21895 0.97535 0.84412 0.92841 0.89745 1.22479 0.91370 0.96151 1.04762 1.22100 0.98428 0.91764 1.03021 1.22290 0.80820 0.98254 0.98250 0.90767 1.21560 0.87186 0.98093 0.88712 1.48599 1.13391 1.25156 1.42864 1.16517 0.84734 0.80305 0.78375 1.90691 1.16166 1.74633 1.63754 1.21907 0.92601 0.97179 0.97741 1.20906 1.00724 0.97495 1.08745 1.20510 0.87799 0.95031 0.94962 1.68315 1.30902 1.03927 1.17640 1.24472 0.85969 0.96731 0.92473 1.22536 1.03639 0.96727 0.98770 1.22990 0.88690 0.90954 0.97179 1.47483 1.10687 1.19304 1.30865 1.78232 1.14906 0.99339 1.17186 0.94347 0.92221 0.95213 0.88344 0.96397 0.87495 0.88930 0.90044 0.88574 0.90575 0.96824 0.82292 0.75221 0.75833 0.78038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.04 11.11 21.65 0.24 -52.80 16 2 C -0.03 -1.68 4.93 84.86 0.42 -1.26 16 3 Si 0.93 48.46 29.59 68.60 2.03 50.49 16 4 H -0.31 -16.85 7.11 99.48 0.71 -16.15 16 5 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.25 -14.40 9.58 84.01 0.80 -13.60 16 8 H 0.04 2.53 7.88 -2.91 -0.02 2.50 16 9 N -0.60 -30.19 2.55 -701.41 -1.79 -31.98 16 10 C 0.15 6.31 5.26 86.18 0.45 6.76 16 11 C -0.14 -5.20 5.03 29.48 0.15 -5.05 16 12 C 0.14 4.52 3.53 44.39 0.16 4.68 16 13 H 0.08 2.79 8.09 -1.98 -0.02 2.78 16 14 C -0.11 -2.57 5.99 31.30 0.19 -2.39 16 15 C -0.12 -3.10 5.74 30.64 0.18 -2.92 16 16 C 0.11 4.07 2.29 44.42 0.10 4.17 16 17 H 0.07 2.81 6.49 -2.18 -0.01 2.79 16 18 C 0.17 7.98 4.53 85.80 0.39 8.37 16 19 N -0.57 -23.28 2.28 -770.89 -1.76 -25.04 16 20 C 0.61 28.93 7.89 86.76 0.68 29.62 16 21 O -0.57 -29.26 17.22 -3.89 -0.07 -29.33 16 22 C 0.06 2.95 6.91 42.02 0.29 3.24 16 23 C -0.25 -10.74 10.65 22.76 0.24 -10.49 16 24 C 0.24 9.29 7.90 133.00 1.05 10.34 16 25 N -0.50 -15.09 10.48 -192.59 -2.02 -17.11 16 26 C 0.19 3.33 11.27 85.31 0.96 4.29 16 27 C -0.19 -2.81 10.05 22.14 0.22 -2.59 16 28 C 0.13 3.18 11.30 83.29 0.94 4.12 16 29 N -0.31 -11.18 3.90 -192.50 -0.75 -11.93 16 30 N -0.27 -11.31 8.16 -48.78 -0.40 -11.71 16 31 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 32 H 0.06 2.13 5.70 -2.44 -0.01 2.12 16 33 H 0.03 1.28 8.00 -2.21 -0.02 1.26 16 34 H 0.10 2.73 8.14 -2.21 -0.02 2.71 16 35 H 0.02 0.77 8.16 -2.30 -0.02 0.75 16 36 H 0.11 2.02 7.66 -2.24 -0.02 2.01 16 37 H 0.09 1.74 8.17 -2.19 -0.02 1.72 16 38 H 0.08 2.22 6.56 -2.36 -0.02 2.21 16 39 H 0.10 2.06 8.17 -2.24 -0.02 2.04 16 40 H 0.08 4.04 4.49 -2.35 -0.01 4.03 16 41 H 0.01 0.68 7.83 -2.31 -0.02 0.66 16 42 H 0.16 6.75 8.06 -2.92 -0.02 6.73 16 43 H 0.23 1.49 8.06 -2.91 -0.02 1.46 16 44 H 0.23 0.62 8.06 -2.91 -0.02 0.60 16 45 H 0.20 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -85.56 355.34 3.75 -81.81 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.04 Total: 10.32 kcal Atomic # 6 Polarization: 30.06 SS G_CDS: 7.23 Total: 37.29 kcal Atomic # 7 Polarization: -144.10 SS G_CDS: -6.48 Total: -150.57 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.07 Total: -29.33 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -85.56 3.75 -81.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039456720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.353 kcal (2) G-P(sol) polarization free energy of solvation -85.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds