Wall clock time and date at job start Sat Apr 11 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00241 * 2 1 4 4 H 1.48497 * 109.47125 * 270.00285 * 3 2 1 5 5 H 1.48508 * 109.47022 * 29.99819 * 3 2 1 6 6 H 1.48493 * 109.47276 * 150.00108 * 3 2 1 7 7 C 1.38813 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00261 * 359.97438 * 7 2 1 10 10 C 1.47167 * 125.59444 * 359.97438 * 9 7 2 11 11 C 1.54653 * 107.35361 * 179.11610 * 10 9 7 12 12 C 1.53309 * 102.71940 * 339.49366 * 11 10 9 13 13 C 1.53303 * 112.22473 * 154.99837 * 12 11 10 14 14 C 1.54667 * 102.71798 * 88.17437 * 13 12 11 15 15 N 1.47172 * 107.34746 * 20.50784 * 14 13 12 16 16 C 1.34774 * 125.59491 * 180.88324 * 15 14 13 17 17 O 1.21557 * 120.00115 * 184.87761 * 16 15 14 18 18 C 1.47767 * 119.99673 * 4.87651 * 16 15 14 19 19 C 1.39634 * 121.07383 * 314.89583 * 18 16 15 20 20 C 1.38337 * 119.37830 * 180.02562 * 19 18 16 21 21 N 1.31738 * 121.54294 * 0.02562 * 20 19 18 22 22 C 1.32111 * 121.94679 * 0.02562 * 21 20 19 23 23 N 1.37938 * 133.80485 * 180.02562 * 22 21 20 24 24 H 0.97001 * 126.35235 * 359.95710 * 23 22 21 25 25 C 1.35985 * 107.28749 * 180.21308 * 23 22 21 26 26 N 1.30278 * 110.05196 * 359.58899 * 25 23 22 27 27 C 1.34648 * 109.67164 * 0.41806 * 26 25 23 28 28 C 1.47786 * 108.81380 * 1.14916 * 15 14 13 29 29 C 1.47785 * 125.59489 * 179.97438 * 9 7 2 30 30 H 0.96995 * 119.99666 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.86801 * 59.67737 * 10 9 7 32 32 H 1.09003 * 109.98554 * 298.62912 * 10 9 7 33 33 H 1.08996 * 110.76760 * 221.18447 * 11 10 9 34 34 H 1.09006 * 110.92280 * 97.86931 * 11 10 9 35 35 H 1.09001 * 110.76330 * 329.86967 * 13 12 11 36 36 H 1.08997 * 110.92313 * 206.55889 * 13 12 11 37 37 H 1.09000 * 109.86995 * 261.07544 * 14 13 12 38 38 H 1.08992 * 109.98223 * 140.01342 * 14 13 12 39 39 H 1.07998 * 120.31248 * 0.02562 * 19 18 16 40 40 H 1.08001 * 119.22789 * 179.97438 * 20 19 18 41 41 H 1.08000 * 124.97022 * 179.75631 * 25 23 22 42 42 H 1.09003 * 110.40395 * 96.37169 * 28 15 14 43 43 H 1.08998 * 110.40330 * 218.79289 * 28 15 14 44 44 H 1.08998 * 110.40352 * 83.35682 * 29 9 7 45 45 H 1.09008 * 110.40176 * 320.94075 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1391 -2.5316 0.0028 11 6 -0.4543 -4.0455 -0.0191 12 6 0.8470 -4.6535 -0.5550 13 6 1.0310 -6.1102 -0.1143 14 6 0.3033 -6.8978 -1.2289 15 7 0.2146 -6.0153 -2.4033 16 6 -0.3671 -6.3288 -3.5780 17 8 -0.3052 -5.5542 -4.5128 18 6 -1.0800 -7.6142 -3.7295 19 6 -0.5239 -8.8064 -3.2613 20 6 -1.2217 -9.9900 -3.4221 21 7 -2.4012 -10.0204 -4.0081 22 6 -2.9793 -8.9272 -4.4727 23 7 -4.1761 -8.6778 -5.1117 24 1 -4.8510 -9.3343 -5.3450 25 6 -4.2315 -7.3418 -5.3590 26 7 -3.1570 -6.7592 -4.9080 27 6 -2.3425 -7.6769 -4.3536 28 6 0.8736 -4.7312 -2.0855 29 6 1.9362 -3.7339 0.0017 30 1 -0.4849 0.8400 -0.0004 31 1 -0.5589 -2.0530 -0.8820 32 1 -0.5570 -2.0790 0.9021 33 1 -1.2855 -4.2575 -0.6915 34 1 -0.6678 -4.4132 0.9847 35 1 0.5590 -6.2839 0.8528 36 1 2.0876 -6.3760 -0.0800 37 1 -0.6975 -7.1724 -0.8955 38 1 0.8689 -7.7946 -1.4813 39 1 0.4420 -8.8045 -2.7782 40 1 -0.7891 -10.9107 -3.0594 41 1 -5.0479 -6.8373 -5.8542 42 1 1.9006 -4.7306 -2.4507 43 1 0.3153 -3.9005 -2.5172 44 1 2.2016 -4.0307 1.0164 45 1 2.8152 -3.7524 -0.6427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041329571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:36 Heat of formation + Delta-G solvation = 99.128962 kcal Electronic energy + Delta-G solvation = -29693.759717 eV Core-core repulsion = 25713.438678 eV Total energy + Delta-G solvation = -3980.321039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.69901 -40.31621 -38.76627 -38.01166 -35.65440 -33.98163 -32.72445 -31.65065 -30.50850 -30.04876 -29.07228 -28.34984 -26.15161 -24.83937 -23.78838 -23.50847 -22.40286 -22.08200 -20.27713 -20.12127 -18.92638 -18.24235 -18.00056 -17.15082 -16.68033 -16.14124 -15.91595 -15.72459 -15.06718 -14.86528 -14.72656 -14.38409 -14.24289 -13.90611 -13.78685 -13.10721 -13.02963 -12.97167 -12.70242 -12.42057 -11.97600 -11.89813 -11.68972 -11.42013 -11.35167 -11.15616 -11.13645 -10.84937 -10.72161 -10.23191 -10.15298 -10.01653 -9.87154 -9.71910 -9.58192 -9.39587 -9.19953 -8.84465 -8.54735 -8.47772 -6.78363 -5.65660 -2.99349 0.21202 0.84259 2.18321 2.47850 2.74058 2.98307 3.44591 3.49202 3.51102 3.54961 3.75848 4.08343 4.25928 4.45484 4.53484 4.61408 4.67866 4.78989 4.89584 4.97016 5.06806 5.32102 5.39355 5.42431 5.53161 5.54640 5.57872 5.71597 5.86274 5.92392 5.95448 6.04173 6.16317 6.19155 6.22877 6.34596 6.40012 6.55246 6.63300 6.73067 6.75551 6.82375 7.42985 7.48664 7.58869 7.61057 7.67825 7.88558 8.21289 8.30524 9.26851 9.87133 10.52856 11.45893 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.002734 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.088145 B =10239.849054 C =11023.530000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.179 3.821 11 C -0.129 4.129 12 C -0.083 4.083 13 C -0.117 4.117 14 C 0.099 3.901 15 N -0.610 5.610 16 C 0.572 3.428 17 O -0.510 6.510 18 C -0.017 4.017 19 C -0.157 4.157 20 C 0.136 3.864 21 N -0.473 5.473 22 C 0.235 3.765 23 N -0.589 5.589 24 H 0.430 0.570 25 C 0.280 3.720 26 N -0.471 5.471 27 C 0.047 3.953 28 C 0.133 3.867 29 C 0.152 3.848 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.153 0.847 40 H 0.173 0.827 41 H 0.228 0.772 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.025 0.975 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 -24.090 -5.663 25.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.167 4.167 12 C -0.085 4.085 13 C -0.155 4.155 14 C -0.024 4.024 15 N -0.345 5.345 16 C 0.359 3.641 17 O -0.384 6.384 18 C -0.030 4.030 19 C -0.180 4.180 20 C -0.031 4.031 21 N -0.186 5.186 22 C -0.002 4.002 23 N -0.204 5.204 24 H 0.270 0.730 25 C -0.008 4.008 26 N -0.189 5.189 27 C -0.076 4.076 28 C 0.012 3.988 29 C 0.026 3.974 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.171 0.829 40 H 0.190 0.810 41 H 0.245 0.755 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.043 0.957 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.867 -23.277 -6.390 25.096 hybrid contribution 0.161 0.456 -0.002 0.483 sum -6.705 -22.821 -6.392 24.630 Atomic orbital electron populations 1.69970 1.04864 1.24969 1.57035 1.24799 0.95700 0.97647 1.02292 0.86131 0.78526 0.83601 0.77568 1.21609 1.21754 1.20750 1.19035 0.90393 0.82387 1.43795 0.90455 1.44586 1.01575 0.99742 1.87288 1.21215 0.84230 0.88049 1.01085 1.22653 0.95099 0.99589 0.99391 1.21640 0.99031 0.94048 0.93797 1.22427 1.00852 0.94572 0.97634 1.22297 1.00721 0.93338 0.86010 1.48577 1.56240 1.17401 1.12238 1.17533 0.78849 0.85611 0.82116 1.90852 1.59132 1.50037 1.38409 1.19583 0.92048 0.94762 0.96650 1.22312 1.02253 0.91927 1.01504 1.22501 0.88364 0.97987 0.94207 1.66203 1.11826 1.29167 1.11437 1.18927 0.89397 0.91681 1.00198 1.42915 1.16922 1.10621 1.49956 0.73008 1.25715 0.98395 0.78943 0.97719 1.70300 1.02277 1.31543 1.14821 1.19197 0.95590 0.90512 1.02284 1.22039 0.97418 0.84790 0.94575 1.21207 0.93423 0.85760 0.97046 0.93797 0.93608 0.93951 0.92284 0.92171 0.89817 0.90333 0.91534 0.91359 0.82917 0.80997 0.75542 0.91212 0.89579 0.95748 0.94103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.53 10.30 55.49 0.57 -26.95 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.61 -15.34 3.41 -170.61 -0.58 -15.92 16 10 C 0.18 4.39 5.38 -2.81 -0.02 4.37 16 11 C -0.13 -2.41 5.92 -25.70 -0.15 -2.56 16 12 C -0.08 -1.39 0.62 -154.03 -0.10 -1.48 16 13 C -0.12 -1.38 5.97 -25.70 -0.15 -1.53 16 14 C 0.10 1.10 5.60 -2.80 -0.02 1.08 16 15 N -0.61 -9.29 3.34 -172.05 -0.57 -9.87 16 16 C 0.57 9.76 7.48 -12.37 -0.09 9.67 16 17 O -0.51 -10.91 17.33 5.32 0.09 -10.81 16 18 C -0.02 -0.24 5.50 -104.45 -0.57 -0.82 16 19 C -0.16 -1.51 8.63 -39.02 -0.34 -1.85 16 20 C 0.14 1.14 11.14 -17.56 -0.20 0.95 16 21 N -0.47 -5.05 10.35 -12.30 -0.13 -5.18 16 22 C 0.24 2.72 8.46 -155.65 -1.32 1.41 16 23 N -0.59 -4.61 6.23 -13.22 -0.08 -4.69 16 24 H 0.43 1.71 8.96 -40.82 -0.37 1.34 16 25 C 0.28 2.41 12.97 -89.69 -1.16 1.25 16 26 N -0.47 -6.82 11.23 -11.89 -0.13 -6.96 16 27 C 0.05 0.68 6.94 -84.62 -0.59 0.09 16 28 C 0.13 2.33 5.85 -3.20 -0.02 2.32 16 29 C 0.15 3.01 6.28 -3.32 -0.02 2.99 16 30 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.05 1.27 7.39 -51.93 -0.38 0.89 16 32 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 33 H 0.06 1.10 8.01 -51.93 -0.42 0.69 16 34 H 0.06 1.02 7.82 -51.93 -0.41 0.62 16 35 H 0.08 0.90 7.78 -51.93 -0.40 0.49 16 36 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.55 5.91 -51.93 -0.31 0.24 16 39 H 0.15 1.07 5.77 -52.49 -0.30 0.77 16 40 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.23 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.07 1.20 7.85 -51.93 -0.41 0.79 16 43 H 0.09 1.83 8.00 -51.93 -0.42 1.42 16 44 H 0.02 0.47 8.07 -51.93 -0.42 0.05 16 45 H 0.04 0.79 7.80 -51.92 -0.41 0.38 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -38.70 364.92 -11.20 -49.90 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.86 Total: -1.48 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: -4.99 Total: 9.02 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: -0.93 Total: -69.57 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.70 -11.20 -49.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041329571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.030 kcal (2) G-P(sol) polarization free energy of solvation -38.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds