Wall clock time and date at job start Sat Apr 11 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00241 * 2 1 4 4 H 1.48497 * 109.47125 * 270.00285 * 3 2 1 5 5 H 1.48508 * 109.47022 * 29.99819 * 3 2 1 6 6 H 1.48493 * 109.47276 * 150.00108 * 3 2 1 7 7 C 1.38813 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00261 * 359.97438 * 7 2 1 10 10 C 1.47167 * 125.59444 * 359.97438 * 9 7 2 11 11 C 1.54653 * 107.35361 * 179.11610 * 10 9 7 12 12 C 1.53309 * 102.71940 * 339.49366 * 11 10 9 13 13 C 1.53303 * 112.22473 * 154.99837 * 12 11 10 14 14 C 1.54667 * 102.71798 * 88.17437 * 13 12 11 15 15 N 1.47172 * 107.34746 * 20.50784 * 14 13 12 16 16 C 1.34774 * 125.59491 * 180.88324 * 15 14 13 17 17 O 1.21557 * 120.00115 * 184.87761 * 16 15 14 18 18 C 1.47767 * 119.99673 * 4.87651 * 16 15 14 19 19 C 1.39634 * 121.07383 * 314.89583 * 18 16 15 20 20 C 1.38337 * 119.37830 * 180.02562 * 19 18 16 21 21 N 1.31738 * 121.54294 * 0.02562 * 20 19 18 22 22 C 1.32111 * 121.94679 * 0.02562 * 21 20 19 23 23 N 1.37938 * 133.80485 * 180.02562 * 22 21 20 24 24 H 0.97001 * 126.35235 * 359.95710 * 23 22 21 25 25 C 1.35985 * 107.28749 * 180.21308 * 23 22 21 26 26 N 1.30278 * 110.05196 * 359.58899 * 25 23 22 27 27 C 1.34648 * 109.67164 * 0.41806 * 26 25 23 28 28 C 1.47786 * 108.81380 * 1.14916 * 15 14 13 29 29 C 1.47785 * 125.59489 * 179.97438 * 9 7 2 30 30 H 0.96995 * 119.99666 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.86801 * 59.67737 * 10 9 7 32 32 H 1.09003 * 109.98554 * 298.62912 * 10 9 7 33 33 H 1.08996 * 110.76760 * 221.18447 * 11 10 9 34 34 H 1.09006 * 110.92280 * 97.86931 * 11 10 9 35 35 H 1.09001 * 110.76330 * 329.86967 * 13 12 11 36 36 H 1.08997 * 110.92313 * 206.55889 * 13 12 11 37 37 H 1.09000 * 109.86995 * 261.07544 * 14 13 12 38 38 H 1.08992 * 109.98223 * 140.01342 * 14 13 12 39 39 H 1.07998 * 120.31248 * 0.02562 * 19 18 16 40 40 H 1.08001 * 119.22789 * 179.97438 * 20 19 18 41 41 H 1.08000 * 124.97022 * 179.75631 * 25 23 22 42 42 H 1.09003 * 110.40395 * 96.37169 * 28 15 14 43 43 H 1.08998 * 110.40330 * 218.79289 * 28 15 14 44 44 H 1.08998 * 110.40352 * 83.35682 * 29 9 7 45 45 H 1.09008 * 110.40176 * 320.94075 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1391 -2.5316 0.0028 11 6 -0.4543 -4.0455 -0.0191 12 6 0.8470 -4.6535 -0.5550 13 6 1.0310 -6.1102 -0.1143 14 6 0.3033 -6.8978 -1.2289 15 7 0.2146 -6.0153 -2.4033 16 6 -0.3671 -6.3288 -3.5780 17 8 -0.3052 -5.5542 -4.5128 18 6 -1.0800 -7.6142 -3.7295 19 6 -0.5239 -8.8064 -3.2613 20 6 -1.2217 -9.9900 -3.4221 21 7 -2.4012 -10.0204 -4.0081 22 6 -2.9793 -8.9272 -4.4727 23 7 -4.1761 -8.6778 -5.1117 24 1 -4.8510 -9.3343 -5.3450 25 6 -4.2315 -7.3418 -5.3590 26 7 -3.1570 -6.7592 -4.9080 27 6 -2.3425 -7.6769 -4.3536 28 6 0.8736 -4.7312 -2.0855 29 6 1.9362 -3.7339 0.0017 30 1 -0.4849 0.8400 -0.0004 31 1 -0.5589 -2.0530 -0.8820 32 1 -0.5570 -2.0790 0.9021 33 1 -1.2855 -4.2575 -0.6915 34 1 -0.6678 -4.4132 0.9847 35 1 0.5590 -6.2839 0.8528 36 1 2.0876 -6.3760 -0.0800 37 1 -0.6975 -7.1724 -0.8955 38 1 0.8689 -7.7946 -1.4813 39 1 0.4420 -8.8045 -2.7782 40 1 -0.7891 -10.9107 -3.0594 41 1 -5.0479 -6.8373 -5.8542 42 1 1.9006 -4.7306 -2.4507 43 1 0.3153 -3.9005 -2.5172 44 1 2.2016 -4.0307 1.0164 45 1 2.8152 -3.7524 -0.6427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041329571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:36 Heat of formation + Delta-G solvation = 71.259174 kcal Electronic energy + Delta-G solvation = -29694.968242 eV Core-core repulsion = 25713.438678 eV Total energy + Delta-G solvation = -3981.529564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.45746 -41.57423 -39.91952 -39.06876 -37.23167 -34.90499 -34.40688 -32.73888 -31.88863 -30.83807 -30.69309 -29.79734 -27.63687 -26.33810 -25.07851 -24.31738 -23.54768 -22.91942 -22.15035 -21.11233 -20.31073 -19.29473 -18.78337 -18.72508 -18.02635 -17.11992 -16.95450 -16.76118 -16.62533 -16.21396 -15.81814 -15.74561 -15.57910 -15.05323 -14.90645 -14.54855 -14.31821 -13.90207 -13.84406 -13.72428 -13.63893 -13.38384 -13.04441 -12.94852 -12.79556 -12.56907 -12.44249 -12.27048 -12.02978 -11.98742 -11.84759 -11.56543 -11.41063 -11.34634 -11.20731 -10.70396 -10.27648 -10.01055 -9.72270 -9.59540 -8.88043 -7.83705 -5.18945 -0.60687 0.10254 1.44163 1.44906 1.47189 1.55284 1.60658 1.75679 1.89818 2.50029 2.71653 3.04490 3.26892 3.35425 3.47530 3.52004 3.65897 3.69491 3.72280 3.81274 3.99206 4.19996 4.23153 4.27969 4.38118 4.40534 4.56063 4.63045 4.67052 4.76014 4.78824 4.86168 4.92021 4.98654 5.00959 5.04728 5.07539 5.24844 5.33291 5.38157 5.46925 5.50200 5.65211 5.76558 6.17987 6.19966 6.40789 6.70562 6.79837 6.98207 7.10461 7.79066 8.43435 9.26874 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.002734 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.088145 B =10239.849054 C =11023.530000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.073 4.073 3 Si 0.978 3.022 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.236 4.236 8 H 0.087 0.913 9 N -0.628 5.628 10 C 0.189 3.811 11 C -0.111 4.111 12 C -0.073 4.073 13 C -0.103 4.103 14 C 0.094 3.906 15 N -0.607 5.607 16 C 0.568 3.432 17 O -0.575 6.575 18 C -0.054 4.054 19 C -0.134 4.134 20 C 0.143 3.857 21 N -0.477 5.477 22 C 0.223 3.777 23 N -0.572 5.572 24 H 0.448 0.552 25 C 0.300 3.700 26 N -0.545 5.545 27 C 0.012 3.988 28 C 0.136 3.864 29 C 0.148 3.852 30 H 0.244 0.756 31 H -0.006 1.006 32 H 0.007 0.993 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.185 0.815 40 H 0.222 0.778 41 H 0.274 0.726 42 H 0.072 0.928 43 H 0.031 0.969 44 H 0.047 0.953 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.589 -28.557 -4.390 29.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.265 4.265 3 Si 0.806 3.194 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.366 4.366 8 H 0.105 0.895 9 N -0.354 5.354 10 C 0.063 3.937 11 C -0.149 4.149 12 C -0.075 4.075 13 C -0.141 4.141 14 C -0.026 4.026 15 N -0.339 5.339 16 C 0.357 3.643 17 O -0.454 6.454 18 C -0.067 4.067 19 C -0.156 4.156 20 C -0.023 4.023 21 N -0.190 5.190 22 C -0.014 4.014 23 N -0.188 5.188 24 H 0.292 0.708 25 C 0.013 3.987 26 N -0.265 5.265 27 C -0.111 4.111 28 C 0.014 3.986 29 C 0.023 3.977 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.131 0.869 39 H 0.202 0.798 40 H 0.239 0.761 41 H 0.290 0.710 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.900 -27.838 -5.083 28.907 hybrid contribution -0.152 1.797 -0.437 1.855 sum -6.052 -26.041 -5.520 27.299 Atomic orbital electron populations 1.70224 1.06460 1.25015 1.58741 1.25691 0.96567 1.01228 1.03020 0.85081 0.77853 0.79199 0.77252 1.21831 1.22234 1.18756 1.19499 0.91112 0.83705 1.42242 0.89522 1.44902 1.02073 1.01425 1.87039 1.20890 0.84103 0.91734 0.96930 1.22455 0.96208 0.95246 1.01040 1.21502 0.96216 0.97056 0.92716 1.22482 1.03121 0.89729 0.98747 1.22664 1.02205 0.93809 0.83970 1.48624 1.55281 1.16938 1.13100 1.18168 0.78189 0.86386 0.81583 1.90797 1.61429 1.52465 1.40699 1.19549 0.92788 0.94388 0.99969 1.22674 1.02861 0.90521 0.99540 1.23352 0.87293 0.99177 0.92497 1.66369 1.12746 1.28433 1.11486 1.19116 0.90363 0.90997 1.00942 1.42905 1.16297 1.10833 1.48736 0.70770 1.26574 0.97683 0.79106 0.95349 1.70239 1.04707 1.33735 1.17838 1.19564 0.96381 0.91843 1.03295 1.21786 0.96788 0.84766 0.95304 1.21466 0.94283 0.83540 0.98381 0.94706 0.98796 0.97493 0.92885 0.89308 0.87405 0.87565 0.90445 0.86911 0.79838 0.76129 0.71039 0.90998 0.95069 0.93485 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.54 10.30 21.65 0.22 -60.32 16 2 C -0.07 -4.31 5.49 84.86 0.47 -3.84 16 3 Si 0.98 47.63 29.55 68.60 2.03 49.65 16 4 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.24 -13.56 10.28 84.03 0.86 -12.69 16 8 H 0.09 4.68 7.83 -2.91 -0.02 4.65 16 9 N -0.63 -32.76 3.41 -693.69 -2.37 -35.13 16 10 C 0.19 9.83 5.38 86.82 0.47 10.30 16 11 C -0.11 -4.19 5.92 31.26 0.19 -4.00 16 12 C -0.07 -2.35 0.62 -51.87 -0.03 -2.38 16 13 C -0.10 -1.95 5.97 31.26 0.19 -1.76 16 14 C 0.09 1.71 5.60 86.82 0.49 2.19 16 15 N -0.61 -18.20 3.34 -816.52 -2.73 -20.93 16 16 C 0.57 20.03 7.48 86.76 0.65 20.68 16 17 O -0.57 -26.66 17.33 -3.89 -0.07 -26.73 16 18 C -0.05 -1.48 5.50 -19.75 -0.11 -1.59 16 19 C -0.13 -2.11 8.63 22.63 0.20 -1.92 16 20 C 0.14 1.79 11.14 84.73 0.94 2.73 16 21 N -0.48 -8.75 10.35 -192.83 -2.00 -10.75 16 22 C 0.22 4.85 8.46 133.93 1.13 5.99 16 23 N -0.57 -8.05 6.23 -195.72 -1.22 -9.27 16 24 H 0.45 2.54 8.96 -92.71 -0.83 1.71 16 25 C 0.30 4.97 12.97 180.02 2.34 7.30 16 26 N -0.55 -16.45 11.23 -191.52 -2.15 -18.60 16 27 C 0.01 0.35 6.94 40.01 0.28 0.63 16 28 C 0.14 4.93 5.85 86.22 0.50 5.43 16 29 C 0.15 5.68 6.28 86.14 0.54 6.23 16 30 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 31 H -0.01 -0.38 7.39 -2.39 -0.02 -0.40 16 32 H 0.01 0.40 7.49 -2.39 -0.02 0.38 16 33 H 0.05 2.05 8.01 -2.39 -0.02 2.03 16 34 H 0.09 2.85 7.82 -2.38 -0.02 2.83 16 35 H 0.11 1.64 7.78 -2.39 -0.02 1.63 16 36 H 0.11 1.54 8.08 -2.39 -0.02 1.52 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.11 1.10 5.91 -2.39 -0.01 1.09 16 39 H 0.18 1.55 5.77 -2.91 -0.02 1.53 16 40 H 0.22 0.48 8.06 -2.91 -0.02 0.46 16 41 H 0.27 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.07 2.53 7.85 -2.39 -0.02 2.51 16 43 H 0.03 1.45 8.00 -2.39 -0.02 1.43 16 44 H 0.05 1.65 8.07 -2.39 -0.02 1.63 16 45 H 0.05 1.73 7.80 -2.38 -0.02 1.71 16 Total: -1.00 -96.62 364.92 1.03 -95.59 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 0.21 Total: 3.20 kcal Atomic # 6 Polarization: 24.19 SS G_CDS: 9.09 Total: 33.29 kcal Atomic # 7 Polarization: -144.76 SS G_CDS: -10.24 Total: -154.99 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.07 Total: -26.73 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.65 kcal Total: -96.62 1.03 -95.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041329571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.846 kcal (2) G-P(sol) polarization free energy of solvation -96.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds