Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00283 * 2 1 4 4 H 1.48502 * 109.47307 * 240.00013 * 3 2 1 5 5 H 1.48501 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47322 * 119.99782 * 3 2 1 7 7 C 1.38808 * 119.99555 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99887 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.47544 * 125.67052 * 0.02562 * 9 7 2 11 11 C 1.55141 * 105.06775 * 203.97311 * 10 9 7 12 12 C 1.53897 * 101.45104 * 324.20635 * 11 10 9 13 13 C 1.53043 * 111.34584 * 273.28782 * 12 11 10 14 14 C 1.54713 * 104.47320 * 238.27415 * 13 12 11 15 15 N 1.48256 * 104.66667 * 23.66905 * 14 13 12 16 16 C 1.34778 * 127.73585 * 141.21364 * 15 14 13 17 17 O 1.21447 * 120.00128 * 179.97438 * 16 15 14 18 18 C 1.48635 * 119.99698 * 359.97258 * 16 15 14 19 19 N 1.33505 * 120.60401 * 359.72726 * 18 16 15 20 20 C 1.30811 * 122.65263 * 179.74147 * 19 18 16 21 21 N 1.34057 * 123.38099 * 0.54892 * 20 19 18 22 22 H 0.97001 * 120.21138 * 179.70960 * 21 20 19 23 23 C 1.36865 * 119.57102 * 359.73576 * 21 20 19 24 24 N 1.31642 * 135.95971 * 179.97438 * 23 21 20 25 25 C 1.33518 * 110.83212 * 180.02562 * 24 23 21 26 26 C 1.36075 * 110.93116 * 359.97438 * 25 24 23 27 27 C 1.39545 * 120.60054 * 179.97438 * 18 16 15 28 28 C 1.48450 * 104.53122 * 321.19510 * 15 14 13 29 29 C 1.47602 * 125.81094 * 180.02562 * 9 7 2 30 30 H 0.97008 * 120.00075 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.34166 * 85.04283 * 10 9 7 32 32 H 1.09000 * 110.33780 * 322.89668 * 10 9 7 33 33 H 1.08993 * 111.03111 * 82.24893 * 11 10 9 34 34 H 1.08994 * 111.02775 * 206.12573 * 11 10 9 35 35 H 1.09007 * 110.43519 * 357.01820 * 13 12 11 36 36 H 1.08996 * 110.43713 * 119.39798 * 13 12 11 37 37 H 1.08994 * 110.40063 * 142.47232 * 14 13 12 38 38 H 1.09004 * 110.39048 * 264.76195 * 14 13 12 39 39 H 1.07998 * 118.30977 * 180.26684 * 20 19 18 40 40 H 1.08005 * 124.53664 * 179.97438 * 25 24 23 41 41 H 1.08001 * 126.72182 * 179.97438 * 26 25 24 42 42 H 1.08999 * 110.46395 * 279.68996 * 28 15 14 43 43 H 1.09001 * 110.46324 * 157.11049 * 28 15 14 44 44 H 1.08997 * 109.94166 * 58.62824 * 29 9 7 45 45 H 1.08994 * 109.96600 * 297.38052 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1428 -2.5338 -0.0005 11 6 -0.4093 -3.9356 0.6086 12 6 0.7784 -4.7411 0.0529 13 6 0.4634 -5.3158 -1.3301 14 6 0.6384 -6.8439 -1.1628 15 7 0.4436 -7.0876 0.2866 16 6 -0.1932 -8.1218 0.8708 17 8 -0.2699 -8.1820 2.0814 18 6 -0.8016 -9.1886 0.0336 19 7 -0.7292 -9.1316 -1.2983 20 6 -1.2458 -10.0502 -2.0732 21 7 -1.9017 -11.1232 -1.6090 22 1 -2.2703 -11.7746 -2.2260 23 6 -2.0483 -11.2934 -0.2589 24 7 -2.6092 -12.1885 0.5267 25 6 -2.4544 -11.8569 1.8108 26 6 -1.7621 -10.6917 1.9319 27 6 -1.4634 -10.2653 0.6253 28 6 1.1075 -5.9375 0.9502 29 6 1.9302 -3.7345 0.0016 30 1 -0.4850 0.8401 0.0004 31 1 -0.5278 -2.4839 -1.0191 32 1 -0.6008 -1.7599 0.6153 33 1 -0.3827 -3.9003 1.6976 34 1 -1.3573 -4.3415 0.2556 35 1 -0.5615 -5.0793 -1.6161 36 1 1.1632 -4.9296 -2.0712 37 1 -0.1142 -7.3782 -1.7425 38 1 1.6394 -7.1474 -1.4697 39 1 -1.1423 -9.9360 -3.1421 40 1 -2.8286 -12.4359 2.6422 41 1 -1.4949 -10.1918 2.8512 42 1 2.1852 -6.0943 0.9963 43 1 0.7002 -5.7874 1.9500 44 1 2.5685 -3.8546 0.8770 45 1 2.5132 -3.8813 -0.9075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041441517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = 94.763923 kcal Electronic energy + Delta-G solvation = -29455.806699 eV Core-core repulsion = 25475.296378 eV Total energy + Delta-G solvation = -3980.510321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.97037 -41.38294 -39.82656 -39.63492 -37.21857 -36.13256 -34.42951 -32.03026 -31.56121 -30.68367 -30.24316 -29.88227 -27.77767 -26.57978 -25.05426 -24.50964 -23.72418 -22.33086 -22.17866 -20.99568 -20.17942 -19.47794 -19.03976 -18.69500 -17.71696 -17.33587 -17.13540 -16.89184 -16.79177 -16.39664 -15.81559 -15.60716 -15.27614 -15.13639 -14.55544 -14.32251 -14.16047 -14.06608 -13.97673 -13.65094 -13.52703 -13.31396 -13.04358 -12.97961 -12.69104 -12.62913 -12.58391 -12.41003 -12.05100 -11.82584 -11.70974 -11.58771 -11.37505 -11.12474 -10.92092 -10.71966 -10.66247 -9.86753 -9.67153 -9.02918 -8.84817 -7.74167 -5.17876 -1.38559 0.38650 1.27948 1.39555 1.48218 1.51396 1.57461 1.60962 2.24082 2.51318 2.52288 2.68314 2.97981 3.34133 3.46866 3.53921 3.63567 3.67088 3.78439 3.89368 4.05996 4.25150 4.33894 4.37244 4.42006 4.42487 4.62973 4.67158 4.72320 4.83863 4.87973 4.93303 5.03722 5.09237 5.11888 5.18789 5.23239 5.38809 5.42786 5.44929 5.50348 5.65080 5.65541 5.84602 5.92272 6.32461 6.34015 6.46450 6.80272 6.88519 7.13337 7.81094 8.46174 9.27653 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029265 B = 0.002332 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.547421 B =12003.203244 C =12344.325484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.235 4.235 8 H 0.083 0.917 9 N -0.626 5.626 10 C 0.162 3.838 11 C -0.117 4.117 12 C -0.074 4.074 13 C -0.112 4.112 14 C 0.098 3.902 15 N -0.595 5.595 16 C 0.572 3.428 17 O -0.559 6.559 18 C 0.209 3.791 19 N -0.526 5.526 20 C 0.383 3.617 21 N -0.498 5.498 22 H 0.451 0.549 23 C 0.257 3.743 24 N -0.538 5.538 25 C 0.054 3.946 26 C -0.225 4.225 27 C -0.191 4.191 28 C 0.126 3.874 29 C 0.148 3.852 30 H 0.245 0.755 31 H -0.007 1.007 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.294 0.706 40 H 0.186 0.814 41 H 0.134 0.866 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.026 0.974 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 -25.321 -10.400 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.364 4.364 8 H 0.101 0.899 9 N -0.352 5.352 10 C 0.037 3.963 11 C -0.156 4.156 12 C -0.075 4.075 13 C -0.150 4.150 14 C -0.023 4.023 15 N -0.326 5.326 16 C 0.359 3.641 17 O -0.437 6.437 18 C 0.073 3.927 19 N -0.246 5.246 20 C 0.102 3.898 21 N -0.104 5.104 22 H 0.295 0.705 23 C 0.002 3.998 24 N -0.259 5.259 25 C -0.088 4.088 26 C -0.249 4.249 27 C -0.203 4.203 28 C 0.003 3.997 29 C 0.023 3.977 30 H 0.055 0.945 31 H 0.011 0.989 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.155 0.845 38 H 0.109 0.891 39 H 0.309 0.691 40 H 0.203 0.797 41 H 0.152 0.848 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.701 -25.422 -10.240 27.540 hybrid contribution 0.138 1.248 1.110 1.675 sum -2.563 -24.175 -9.130 25.968 Atomic orbital electron populations 1.70066 1.06241 1.24942 1.58843 1.25624 0.96596 1.00979 1.03010 0.85134 0.77072 0.78826 0.78192 1.20172 1.22237 1.20532 1.19428 0.91061 0.83697 1.42173 0.89937 1.44924 1.02529 1.00888 1.86859 1.21655 0.84242 0.93936 0.96456 1.22798 0.97214 0.96458 0.99129 1.21461 0.95715 0.93505 0.96818 1.22478 1.02841 0.94983 0.94733 1.23212 1.04997 0.94859 0.79212 1.48974 1.51880 1.21085 1.10649 1.17825 0.78662 0.81190 0.86405 1.90770 1.60693 1.77392 1.14884 1.20888 0.90548 0.90918 0.90381 1.67965 1.25824 1.27673 1.03176 1.26409 0.82571 0.78199 1.02653 1.41961 1.41476 1.22861 1.04068 0.70481 1.20643 0.99455 0.94197 0.85525 1.69531 1.25910 1.28205 1.02294 1.22960 0.97619 0.95155 0.93099 1.21584 1.07316 1.00050 0.95994 1.20983 1.05535 0.97118 0.96700 1.22229 0.97829 0.83322 0.96319 1.21412 0.93839 0.83963 0.98507 0.94489 0.98889 0.91775 0.93200 0.91001 0.91121 0.89431 0.84451 0.89107 0.69120 0.79741 0.84791 0.89130 0.91579 0.95609 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.98 10.09 21.65 0.22 -56.76 16 2 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 3 Si 0.98 45.59 29.55 68.60 2.03 47.61 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.23 -13.02 10.29 84.03 0.86 -12.15 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.63 -31.72 3.42 -692.22 -2.37 -34.09 16 10 C 0.16 8.00 5.81 86.91 0.51 8.51 16 11 C -0.12 -4.53 5.93 31.63 0.19 -4.35 16 12 C -0.07 -2.37 0.79 -51.80 -0.04 -2.41 16 13 C -0.11 -2.80 6.24 31.19 0.19 -2.61 16 14 C 0.10 1.88 6.57 86.63 0.57 2.45 16 15 N -0.59 -15.64 3.33 -811.18 -2.70 -18.34 16 16 C 0.57 17.02 7.93 87.02 0.69 17.71 16 17 O -0.56 -20.85 15.70 -3.55 -0.06 -20.90 16 18 C 0.21 4.86 6.80 41.98 0.29 5.15 16 19 N -0.53 -6.82 6.67 -187.67 -1.25 -8.08 16 20 C 0.38 0.87 12.24 180.48 2.21 3.08 16 21 N -0.50 -2.82 5.32 -191.94 -1.02 -3.84 16 22 H 0.45 -1.27 8.93 -92.71 -0.83 -2.10 16 23 C 0.26 5.00 8.72 136.28 1.19 6.18 16 24 N -0.54 -12.89 11.16 -188.44 -2.10 -15.00 16 25 C 0.05 1.33 11.70 83.93 0.98 2.31 16 26 C -0.23 -6.38 10.25 22.36 0.23 -6.15 16 27 C -0.19 -4.90 6.19 -19.88 -0.12 -5.02 16 28 C 0.13 3.68 6.08 86.05 0.52 4.21 16 29 C 0.15 5.75 6.40 86.19 0.55 6.30 16 30 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 31 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.06 3.69 5.88 -2.39 -0.01 3.68 16 33 H 0.05 2.01 7.75 -2.39 -0.02 1.99 16 34 H 0.07 2.54 7.70 -2.39 -0.02 2.52 16 35 H 0.07 1.83 7.49 -2.38 -0.02 1.81 16 36 H 0.09 2.14 7.32 -2.39 -0.02 2.12 16 37 H 0.14 2.04 5.20 -2.39 -0.01 2.03 16 38 H 0.09 1.41 8.14 -2.38 -0.02 1.40 16 39 H 0.29 -3.67 8.06 -2.91 -0.02 -3.69 16 40 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.13 4.12 7.38 -2.91 -0.02 4.10 16 42 H 0.09 2.39 7.85 -2.39 -0.02 2.37 16 43 H 0.07 2.21 7.36 -2.39 -0.02 2.19 16 44 H 0.03 1.01 7.78 -2.39 -0.02 0.99 16 45 H 0.04 1.48 7.38 -2.39 -0.02 1.46 16 Total: -1.00 -86.78 360.53 2.25 -84.53 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 0.22 Total: 5.15 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 9.28 Total: 19.71 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -9.22 Total: -136.10 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.06 Total: -20.90 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -86.78 2.25 -84.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041441517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.297 kcal (2) G-P(sol) polarization free energy of solvation -86.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds