Wall clock time and date at job start Sat Apr 11 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47052 * 299.99967 * 3 2 1 6 6 H 1.48496 * 109.47288 * 59.99792 * 3 2 1 7 7 C 1.38821 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99955 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99537 * 0.02562 * 7 2 1 10 10 C 1.48155 * 126.40434 * 0.02562 * 9 7 2 11 11 C 1.55293 * 107.04646 * 184.96541 * 10 9 7 12 12 C 1.53698 * 101.84961 * 22.43223 * 11 10 9 13 13 H 1.09005 * 111.10383 * 78.60617 * 12 11 10 14 14 C 1.51968 * 115.01449 * 206.54633 * 12 11 10 15 15 C 1.53888 * 107.29025 * 175.45967 * 14 12 11 16 16 N 1.46607 * 110.70306 * 308.18454 * 15 14 12 17 17 C 1.34779 * 119.74888 * 227.74406 * 16 15 14 18 18 O 1.21555 * 120.00022 * 356.05305 * 17 16 15 19 19 C 1.47760 * 119.99531 * 176.04743 * 17 16 15 20 20 C 1.39643 * 121.07570 * 52.67983 * 19 17 16 21 21 C 1.38341 * 119.37516 * 179.76063 * 20 19 17 22 22 N 1.31725 * 121.54801 * 0.50447 * 21 20 19 23 23 C 1.32110 * 121.94654 * 359.75388 * 22 21 20 24 24 N 1.37953 * 133.80796 * 179.97438 * 23 22 21 25 25 H 0.96992 * 126.35313 * 0.02834 * 24 23 22 26 26 C 1.35982 * 107.28258 * 180.02562 * 24 23 22 27 27 N 1.30281 * 110.06384 * 359.97438 * 26 24 23 28 28 C 1.34652 * 109.66549 * 0.02562 * 27 26 24 29 29 C 1.47866 * 119.94979 * 48.24585 * 16 15 14 30 30 C 1.45512 * 126.39549 * 179.97438 * 9 7 2 31 31 H 1.08997 * 109.56861 * 266.66764 * 30 9 7 32 32 H 0.96996 * 119.99914 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.91497 * 65.61342 * 10 9 7 34 34 H 1.09003 * 110.08834 * 304.40898 * 10 9 7 35 35 H 1.09004 * 110.96039 * 140.58031 * 11 10 9 36 36 H 1.08997 * 110.96083 * 264.28726 * 11 10 9 37 37 H 1.09009 * 109.88815 * 294.89547 * 14 12 11 38 38 H 1.08992 * 109.89621 * 56.00667 * 14 12 11 39 39 H 1.09000 * 109.23355 * 68.49403 * 15 14 12 40 40 H 1.08996 * 109.23383 * 187.87032 * 15 14 12 41 41 H 1.07996 * 120.30803 * 359.97438 * 20 19 17 42 42 H 1.07997 * 119.22403 * 180.28085 * 21 20 19 43 43 H 1.07999 * 124.97025 * 179.97438 * 26 24 23 44 44 H 1.08998 * 109.56436 * 188.62745 * 29 16 15 45 45 H 1.09005 * 110.56028 * 67.06534 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1468 -2.5532 -0.0005 11 6 -0.4344 -4.0738 0.1284 12 6 0.8675 -4.5886 0.7629 13 1 0.8902 -4.3836 1.8333 14 6 1.1964 -6.0421 0.4654 15 6 2.5756 -6.3344 1.0822 16 7 3.5593 -5.3377 0.6482 17 6 4.7626 -5.7397 0.1933 18 8 5.0560 -6.9191 0.2110 19 6 5.7250 -4.7466 -0.3271 20 6 6.0841 -3.6272 0.4266 21 6 6.9923 -2.7222 -0.0929 22 7 7.5209 -2.8854 -1.2884 23 6 7.2177 -3.9203 -2.0514 24 7 7.6115 -4.3273 -3.3094 25 1 8.2382 -3.8701 -3.8915 26 6 6.9578 -5.4882 -3.5814 27 7 6.1945 -5.8171 -2.5782 28 6 6.3062 -4.8956 -1.6027 29 6 3.2325 -3.8975 0.7214 30 6 1.9081 -3.7215 0.0005 31 1 1.9996 -4.0799 -1.0247 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5622 -2.1745 -0.9344 34 1 -0.5840 -2.0197 0.8435 35 1 -1.2860 -4.2554 0.7841 36 1 -0.5956 -4.5246 -0.8508 37 1 0.4445 -6.6917 0.9137 38 1 1.2307 -6.2016 -0.6122 39 1 2.4954 -6.3099 2.1690 40 1 2.9062 -7.3248 0.7695 41 1 5.6594 -3.4713 1.4072 42 1 7.2717 -1.8597 0.4939 43 1 7.0569 -6.0548 -4.4955 44 1 4.0101 -3.3208 0.2206 45 1 3.1386 -3.5785 1.7595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042080188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:46 Heat of formation + Delta-G solvation = 74.308303 kcal Electronic energy + Delta-G solvation = -30630.865312 eV Core-core repulsion = 26649.467968 eV Total energy + Delta-G solvation = -3981.397344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.48186 -41.56351 -39.85988 -39.15227 -36.73449 -35.08945 -34.54707 -33.22884 -32.24383 -30.91561 -30.71735 -30.09078 -26.86020 -26.12857 -24.97856 -24.25275 -23.71388 -22.69755 -21.78305 -21.53219 -20.71198 -19.29843 -18.89630 -18.48771 -18.09728 -17.27233 -16.86160 -16.65726 -16.52902 -16.21646 -15.80827 -15.72079 -15.63466 -15.09413 -14.92027 -14.71579 -14.43716 -13.98591 -13.80561 -13.79450 -13.57127 -13.45514 -13.12083 -13.05231 -12.75694 -12.48940 -12.30056 -12.05856 -12.04543 -11.94452 -11.79487 -11.54369 -11.40458 -11.32254 -10.99374 -10.69875 -10.30897 -9.94671 -9.76148 -9.61574 -8.88388 -7.81241 -5.16659 -0.59582 0.06078 1.39221 1.48917 1.49865 1.58859 1.59429 1.74641 1.87681 2.52502 2.66516 2.98278 3.19924 3.38382 3.45768 3.50544 3.70352 3.82373 3.92447 3.98939 4.01901 4.18498 4.23754 4.28676 4.30026 4.39181 4.49322 4.60751 4.62730 4.68040 4.78830 4.84531 4.89093 4.91469 4.98905 5.09836 5.13659 5.16473 5.42586 5.45022 5.51414 5.58348 5.68034 5.80777 6.15669 6.16810 6.22440 6.65862 6.76762 6.95136 7.10611 7.79663 8.48206 9.30484 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009580 B = 0.004880 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.159698 B = 5736.864149 C = 7695.634326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.064 4.064 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.301 1.301 6 H -0.292 1.292 7 C -0.229 4.229 8 H 0.088 0.912 9 N -0.608 5.608 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.097 4.097 13 H 0.085 0.915 14 C -0.107 4.107 15 C 0.110 3.890 16 N -0.594 5.594 17 C 0.567 3.433 18 O -0.559 6.559 19 C -0.058 4.058 20 C -0.141 4.141 21 C 0.135 3.865 22 N -0.479 5.479 23 C 0.219 3.781 24 N -0.573 5.573 25 H 0.448 0.552 26 C 0.304 3.696 27 N -0.537 5.537 28 C 0.018 3.982 29 C 0.114 3.886 30 C 0.148 3.852 31 H 0.000 1.000 32 H 0.245 0.755 33 H -0.003 1.003 34 H 0.027 0.973 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.171 0.829 42 H 0.210 0.790 43 H 0.281 0.719 44 H 0.083 0.917 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.508 -10.374 -1.963 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.257 4.257 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.229 1.229 6 H -0.219 1.219 7 C -0.358 4.358 8 H 0.106 0.894 9 N -0.333 5.333 10 C 0.057 3.943 11 C -0.163 4.163 12 C -0.117 4.117 13 H 0.103 0.897 14 C -0.145 4.145 15 C -0.011 4.011 16 N -0.326 5.326 17 C 0.355 3.645 18 O -0.439 6.439 19 C -0.071 4.071 20 C -0.164 4.164 21 C -0.031 4.031 22 N -0.193 5.193 23 C -0.019 4.019 24 N -0.190 5.190 25 H 0.292 0.708 26 C 0.018 3.982 27 N -0.257 5.257 28 C -0.104 4.104 29 C -0.008 4.008 30 C 0.040 3.960 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.045 0.955 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.188 0.812 42 H 0.226 0.774 43 H 0.297 0.703 44 H 0.101 0.899 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.675 -10.929 -2.245 16.886 hybrid contribution 0.143 1.609 -0.402 1.665 sum 12.818 -9.320 -2.647 16.068 Atomic orbital electron populations 1.70166 1.06347 1.25017 1.58564 1.25565 0.96431 1.00766 1.02919 0.85151 0.78819 0.79947 0.76393 1.18165 1.22913 1.21887 1.19417 0.90960 0.83146 1.42266 0.89420 1.44408 1.02247 1.00237 1.86427 1.21329 0.83333 0.91959 0.97660 1.22609 0.97746 0.95338 1.00566 1.22225 0.94982 0.94690 0.99807 0.89657 1.21742 0.96207 0.95562 1.00991 1.21776 0.87612 0.91713 1.00035 1.48205 1.13796 1.07980 1.62573 1.18189 0.82066 0.87488 0.76784 1.90732 1.77582 1.18445 1.57091 1.19620 0.98055 0.96365 0.93094 1.22485 0.99159 0.92457 1.02278 1.23142 0.91575 0.98917 0.89458 1.66309 1.26717 1.19849 1.06391 1.19215 0.98220 0.94394 0.90031 1.42898 1.40228 1.22820 1.13010 0.70841 1.26686 0.87441 0.84454 0.99661 1.70177 1.25256 1.28327 1.01948 1.19447 1.00151 0.95278 0.95530 1.21964 0.97937 0.79084 1.01853 1.21088 0.93598 0.86190 0.95163 0.98231 0.94601 0.98502 0.95495 0.89639 0.91914 0.87240 0.92602 0.89365 0.89691 0.81152 0.77389 0.70339 0.89874 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.99 10.44 21.65 0.23 -55.77 16 2 C -0.06 -3.50 5.49 84.86 0.47 -3.04 16 3 Si 0.97 44.08 29.55 68.60 2.03 46.10 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 7 C -0.23 -12.06 9.88 84.04 0.83 -11.23 16 8 H 0.09 4.33 7.43 -2.91 -0.02 4.31 16 9 N -0.61 -29.76 3.35 -669.15 -2.24 -32.00 16 10 C 0.18 8.77 5.45 86.85 0.47 9.24 16 11 C -0.12 -4.39 6.54 31.62 0.21 -4.18 16 12 C -0.10 -3.14 2.60 -10.06 -0.03 -3.16 16 13 H 0.09 2.69 8.12 -2.38 -0.02 2.67 16 14 C -0.11 -2.77 5.72 30.55 0.17 -2.60 16 15 C 0.11 2.96 6.31 86.66 0.55 3.51 16 16 N -0.59 -18.83 3.00 -822.07 -2.47 -21.29 16 17 C 0.57 20.06 7.26 86.76 0.63 20.69 16 18 O -0.56 -22.75 16.44 -3.89 -0.06 -22.81 16 19 C -0.06 -1.92 4.95 -19.75 -0.10 -2.02 16 20 C -0.14 -3.71 7.51 22.63 0.17 -3.54 16 21 C 0.13 3.21 11.14 84.73 0.94 4.15 16 22 N -0.48 -13.04 10.35 -192.82 -2.00 -15.04 16 23 C 0.22 6.10 8.46 133.92 1.13 7.23 16 24 N -0.57 -10.38 6.23 -195.71 -1.22 -11.60 16 25 H 0.45 4.43 8.96 -92.71 -0.83 3.60 16 26 C 0.30 5.48 12.97 180.02 2.34 7.82 16 27 N -0.54 -16.53 11.23 -191.51 -2.15 -18.68 16 28 C 0.02 0.61 7.00 40.01 0.28 0.89 16 29 C 0.11 3.84 4.71 85.72 0.40 4.24 16 30 C 0.15 5.84 2.79 45.62 0.13 5.97 16 31 H 0.00 0.01 7.93 -2.39 -0.02 -0.01 16 32 H 0.24 14.10 8.31 -92.71 -0.77 13.33 16 33 H 0.00 -0.18 7.77 -2.39 -0.02 -0.20 16 34 H 0.03 1.44 7.21 -2.39 -0.02 1.42 16 35 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 36 H 0.06 2.13 8.12 -2.39 -0.02 2.11 16 37 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.06 1.61 7.98 -2.39 -0.02 1.59 16 39 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.08 2.40 6.99 -2.39 -0.02 2.39 16 41 H 0.17 3.65 7.28 -2.91 -0.02 3.63 16 42 H 0.21 3.25 8.06 -2.91 -0.02 3.23 16 43 H 0.28 1.30 8.06 -2.91 -0.02 1.28 16 44 H 0.08 2.88 4.49 -2.39 -0.01 2.87 16 45 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 Total: -1.00 -82.34 359.96 0.92 -81.42 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.21 Total: 15.71 kcal Atomic # 6 Polarization: 25.36 SS G_CDS: 8.60 Total: 33.96 kcal Atomic # 7 Polarization: -144.53 SS G_CDS: -9.85 Total: -154.38 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.06 Total: -22.81 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -82.34 0.92 -81.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042080188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.724 kcal (2) G-P(sol) polarization free energy of solvation -82.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds